Home BrowseSearch Help Group

Pfam Domains mapped on to the structure: 1NNO

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF13442 Cytochrome C oxidase, cbb3-type, subunit III PF13442 PF13442
2 A PF00034 Cytochrome c PF00034 PF00034
3 A PF02239 Cytochrome D1 heme domain PF02239 PF02239

Conserved Domain Database Superfamily Annotations: 1NNO

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1NNO 212313 cl11414 Cytochrom_C superfamily - -
2 1NNO 212313 cl11414 Cytochrom_C superfamily - -
Structural Details of PDB entry 1NNO

Structural Details of PDB entry 1NNO

PDBid Chains Hinge Swapped Domain
1NNO A,B A:56-62,B:56-62 A:5-55,B:5-55

Swapped-domain interface residues and interactions:

Chains Residues
A 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 31, 36, 40, 41, 44, 45, 46, 48, 49, 50, 53, 87, 89, 114, 115, 116, 117, 198, 222, 223, 390, 422, 441, 443,
B 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 26, 31, 36, 40, 41, 44, 45, 46, 48, 49, 50, 53, 87, 89, 114, 115, 116, 117, 198, 199, 222, 223, 390, 422, 441, 443,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 59, 90, 111, 112, 118, 120, 121, 122, 156, 249, 263, 265, 267, 268, 269, 273, 274, 275, 276, 314, 315, 316, 317, 318, 319, 320, 321, 367, 369, 543,
B 59, 111, 112, 118, 120, 121, 122, 156, 249, 262, 263, 265, 267, 268, 269, 273, 274, 275, 276, 314, 315, 316, 317, 318, 319, 320, 321, 327, 343, 357, 367, 369,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1NNO B:1NNO

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1NNO.ali
atm file:1NNO.atm
cof file:1NNO.cof
hbd file:1NNO.hbd
html file:1NNO.html
pdb file:1NNO.pdb
ps file:1NNO.ps
psa file:1NNO.psa
rtf file:1NNO.rtf
sst file:1NNO.sst
tem file:1NNO.tem