Pfam Domains mapped on to the structure: 1NLY

No.	Chain ID	Pfam ID	Pfam Description	Linkout - Pfam	Linkout - CDD
1	A	PF00437	Type II/IV secretion system protein	PF00437	PF00437
2	A	PF00270	DEAD/DEAH box helicase	PF00270	PF00270

Conserved Domain Database Superfamily Annotations: 1NLY

No.	PDB ID	PSSM ID	CDD Accession	Superfamily Short Name	Linkout - CDD
1	1NLY	29996	cd01130	VirB11-like_ATPase -	cl09099
2	1NLY	212613	cl09099	P-loop_NTPase	superfamily - -
3	1NLY	212613	cl09099	P-loop_NTPase	superfamily - -

Structural Details of PDB entry 1NLY PDBid Chains Hinge Swapped Domain 1NLY A,B A:293-308,B:293-308 A:309-328,B:309-328 Swapped-domain interface residues and interactions: Chains Residues A 309, 328, B 318, Non-swapped-domain interface residues and interactions: Chains Residues A 6, 9, 10, 13, 14, 17, 18, 21, 93, 198, 200, 208, 216, 217, 218, 219, 220, 221, 222, 226, 227, 231, 232, 235, 238, 240, 242, 258, 259, 262, 263, 264, 265, 266, 293, 296, 297, 298, 301, B 46, 47, 49, 51, 54, 57, 59, 65, 74, 77, 78, 79, 86, 98, 99, 100, 102, 103, 105, 115, 117, 120, 121, 122, 123, 125, 126, 129, 131, 179, 180, 181, 250, 273, 274, 275, 279, 282, 283, 286, 289, 290, 295, 297, 299,

Swapped domains are represented using trasperent spheres. Non-swapped part is represented using light color and cartoon representation. Hinge region is shown in yellow color.

Mutations in critical regions:

Chains	Hinge	Domain swapped interface	Non-swapped interface	Swapped Domain
A	No mutation	No mutation	No mutation	No mutation
B	No mutation	No mutation	No mutation	No mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

2D-plot:

A:1NLY

B:1NLY

JOY Structural annotation for hinge hinge and swapped domain:

Hinge	Swapped domain

JOY output:

ali file:	1NLY.ali
atm file:	1NLY.atm
cof file:	1NLY.cof
hbd file:	1NLY.hbd
html file:	1NLY.html
pdb file:	1NLY.pdb
ps file:	1NLY.ps
psa file:	1NLY.psa
rtf file:	1NLY.rtf
sst file:	1NLY.sst
tem file:	1NLY.tem