Pfam Domains mapped on to the structure: 1LBD

No.	Chain ID	Pfam ID	Pfam Description	Linkout - Pfam	Linkout - CDD
1	A	PF00104	Ligand-binding domain of nuclear hormone receptor	PF00104	PF00104

Conserved Domain Database Superfamily Annotations: 1LBD

No.	PDB ID	PSSM ID	CDD Accession	Superfamily Short Name	Linkout - CDD
1	1LBD	132741	cd06943	NR_LBD_RXR_like -	cl11397
2	1LBD	209301	cl11397	NR_LBD	superfamily - -

Structural Details of PDB entry 1LBD PDBid Chains Hinge Swapped Domain 1LBD D,B D:257-265,B:257-265 D:225-256,B:225-256 Swapped-domain interface residues and interactions: Chains Residues B 225, 226, 227, 228, 229, 231, 232, 233, 234, 236, 237, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 461, D 241, 242, 245, E 461, 462, F 225, 226, 227, 228, 229, 231, 232, 233, 234, 236, 237, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 278, 327, 328, 330, 331, 364, 461, Non-swapped-domain interface residues and interactions: Chains Residues B 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 284, 285, 287, 288, 290, 291, 293, 294, 295, 297, 298, 299, 301, 302, 303, 304, 305, 306, 307, 309, 312, 315, 316, 318, 319, 320, 321, 322, 325, 327, 328, 330, 331, 333, 334, 335, 336, 338, 339, 340, 341, 342, 344, 347, 348, 350, 351, 352, 354, 355, 357, 358, 359, 360, 361, 363, 364, 374, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 390, 391, 393, 394, 395, 397, 398, 401, 402, 403, 405, 406, 407, 408, 409, 410, 411, 412, 413, 415, 416, 417, 419, 420, 421, 422, 423, 424, 426, 427, 430, 431, 433, 434, 435, 436, 438, 439, 440, 442, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, D 276, 277, 280, 281, 284, 285, 290, 294, 295, 297, 298, 299, 301, 302, 335, 338, 339, 340, 381, 382, 440, 444, 447, 448, 450, 451, 452, 454, 455, 456, 457, 459, 460, 461, 462, E 241, 242, 245, 276, 277, 280, 281, 284, 285, 290, 294, 295, 297, 298, 299, 301, 302, 335, 338, 339, 340, 381, 382, 440, 444, 447, 448, 450, 451, 452, 454, 455, 456, 457, 459, 460, F 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 272, 273, 274, 275, 276, 277, 279, 280, 281, 284, 285, 287, 288, 290, 291, 293, 294, 295, 297, 298, 299, 301, 302, 303, 304, 305, 306, 307, 309, 312, 315, 316, 318, 319, 320, 321, 322, 325, 333, 334, 335, 336, 338, 339, 340, 341, 342, 344, 347, 348, 350, 351, 352, 354, 355, 357, 358, 359, 360, 361, 363, 374, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 390, 391, 393, 394, 395, 397, 398, 401, 402, 403, 405, 406, 407, 408, 409, 410, 411, 412, 413, 415, 416, 417, 419, 420, 421, 422, 423, 424, 426, 427, 430, 431, 433, 434, 435, 436, 438, 439, 440, 442, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460,

Swapped domains are represented using trasperent spheres. Non-swapped part is reprented using light color and cartoon reprentation. Hinge region is shown in yellow color.

Mutations in critical regions:

Chains	Hinge	Domain swapped interface	Non-swapped interface	Swapped Domain
D	No mutation	No mutation	No mutation	No mutation
B	No mutation	No mutation	No mutation	No mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

2D-plot:

3:1LBD

D:1LBD

F:1LBD

JOY Structural annotation for hinge hinge and swapped domain:

Hinge	Swapped domain

JOY output:

ali file:	1LBD.ali
atm file:	1LBD.atm
pdb file:	1LBD.pdb
psa file:	1LBD.psa
sst file:	1LBD.sst