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Pfam Domains mapped on to the structure: 1L5B

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF08881 CVNH domain PF08881 PF08881

Conserved Domain Database Superfamily Annotations: 1L5B

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1L5B 204087 cl07470 CVNH superfamily - -
Structural Details of PDB entry 1L5B

Structural Details of PDB entry 1L5B

PDBid Chains Hinge Swapped Domain
1L5B A,B A:49-54,B:49-54 A:55-101,B:55-101

Swapped-domain interface residues and interactions:

Chains Residues
A 1, 2, 3, 4, 5, 12, 13, 15, 16, 22, 23, 24, 25, 30, 32, 34, 37, 42, 44, 45, 46, 47, 55, 58, 61, 63, 66, 67, 69, 73, 74, 75, 76, 81, 83, 85, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 100, 101,
B 1, 2, 3, 4, 5, 11, 13, 15, 16, 22, 23, 24, 25, 30, 32, 34, 37, 44, 45, 46, 47, 55, 58, 61, 63, 66, 67, 69, 73, 74, 75, 76, 83, 85, 87, 88, 89, 90, 91, 92, 93, 95, 96, 97, 98, 100,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 7, 11, 18, 20, 36, 38, 39, 40, 41, 49, 50, 51, 52, 53, 54,
B 7, 18, 36, 38, 39, 40, 41, 42, 43, 49, 50, 52, 53, 54,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1L5B B:1L5B

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1L5B.ali
atm file:1L5B.atm
cof file:1L5B.cof
hbd file:1L5B.hbd
html file:1L5B.html
pdb file:1L5B.pdb
ps file:1L5B.ps
psa file:1L5B.psa
rtf file:1L5B.rtf
sst file:1L5B.sst
tem file:1L5B.tem