Pfam Domains mapped on to the structure: 1KQP
No.
Chain ID
Pfam ID
Pfam Description
Linkout - Pfam
Linkout - CDD
1
A
PF02540
NAD synthase
PF02540
PF02540
Conserved Domain Database Superfamily Annotations: 1KQP
Structural Details of PDB entry 1KQP
Structural Details of PDB entry 1KQP
PDBid
Chains
Hinge
Swapped Domain
1KQP
A,B
A:260-262,B:260-262
A:263-271,B:263-271
Swapped-domain interface residues and interactions:
Chains
Residues
A
28 , 177 , 179 , 182 , 263 , 264 , 265 , 266 , 270 , 271 ,
B
28 , 177 , 179 , 182 , 263 , 264 , 265 , 266 , 270 ,
Non-swapped-domain interface residues and interactions:
Chains
Residues
A
11 , 24 , 25 , 31 , 32 , 35 , 103 , 104 , 105 , 106 , 109 , 110 , 113 , 114 , 117 , 118 , 121 , 122 , 124 , 126 , 127 , 130 , 134 , 137 , 140 , 141 , 144 , 145 , 146 , 148 , 149 , 150 , 170 , 171 , 174 , 175 , 176 , 257 , 259 , 261 , 262 ,
B
11 , 13 , 24 , 25 , 31 , 32 , 35 , 103 , 104 , 105 , 106 , 109 , 110 , 113 , 114 , 117 , 118 , 121 , 122 , 124 , 126 , 127 , 130 , 134 , 137 , 140 , 141 , 144 , 145 , 146 , 148 , 149 , 150 , 170 , 171 , 174 , 175 , 176 , 257 , 259 , 260 , 261 , 262 ,
Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.
Mutations in critical regions:
Chains
Hinge
Domain swapped interface
Non-swapped interface
Swapped Domain
A No mutation No mutation No mutation No mutation
B No mutation No mutation No mutation No mutation
HIDE output:
JMOL Visualization:
2D-plot:
JOY Structural annotation for hinge hinge and swapped domain:
JOY output: