Home BrowseSearch Help Group

Pfam Domains mapped on to the structure: 1K87

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01619 Proline dehydrogenase PF01619 PF01619

Gene Ontology Annotations: 1K87

No. GO ID GO Description Linkout - AmiGO
1 GO:0055114 oxidation-reduction process GO:0055114

Conserved Domain Database Superfamily Annotations: 1K87

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1K87 207903 cl03282 Pro_dh superfamily - -
2 1K87 212336 cl11961 ALDH-SF superfamily C -
3 1K87 210183 RHH_1 superfamily C -
Structural Details of PDB entry 1K87

Structural Details of PDB entry 1K87

PDBid Chains Hinge Swapped Domain
1K87 A,B A:137-141,B:137-141 A:87-136,B:87-136

Swapped-domain interface residues and interactions:

Chains Residues
A 91, 92, 94, 95, 96, 98, 99, 100, 101, 103, 104, 106, 107, 108, 110, 111, 113, 114, 115, 116, 117, 120, 121, 123, 124, 125, 127, 128, 129, 131, 132, 133, 134, 135, 136, 408, 409, 412, 413, 415, 416, 452, 454, 456, 461, 464, 465, 467, 468, 489, 490, 493, 494, 497, 519, 520, 570, 577, 578, 581, 585, 598, 599, 601,
B 91, 92, 94, 95, 96, 98, 99, 100, 101, 103, 104, 106, 107, 108, 110, 111, 113, 114, 115, 116, 117, 120, 121, 123, 124, 125, 127, 128, 129, 131, 132, 133, 134, 135, 136, 408, 409, 412, 413, 415, 416, 452, 454, 456, 461, 464, 465, 467, 468, 489, 490, 493, 494, 497, 519, 520, 570, 577, 578, 581, 585, 598, 599, 601,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 138, 141, 142, 145, 149, 213, 273, 274, 277, 278, 375, 378, 381, 382, 411, 419, 450, 451, 457, 471, 472, 498, 523, 529, 530, 531, 533, 573, 575, 583, 588, 589, 597, 612,
B 138, 141, 142, 145, 149, 213, 273, 274, 277, 278, 375, 378, 381, 382, 411, 419, 450, 451, 457, 471, 472, 498, 523, 529, 530, 531, 533, 573, 575, 583, 588, 589, 597,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1K87 B:1K87

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1K87.ali
atm file:1K87.atm
cof file:1K87.cof
hbd file:1K87.hbd
html file:1K87.html
pdb file:1K87.pdb
ps file:1K87.ps
psa file:1K87.psa
rtf file:1K87.rtf
sst file:1K87.sst
tem file:1K87.tem