Home BrowseSearch Help Group

Pfam Domains mapped on to the structure: 1K50

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF02246 Protein L b1 domain PF02246 PF02246

Conserved Domain Database Superfamily Annotations: 1K50

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1K50 202173 cl08344 B1 superfamily - -
Structural Details of PDB entry 1K50

Structural Details of PDB entry 1K50

PDBid Chains Hinge Swapped Domain
1K50 A,D,C,B A:52-55,D:52-55,C:52-55,B:52-55 A:56-64,D:56-64,C:56-64,B:56-64

Swapped-domain interface residues and interactions:

Chains Residues
A 56, 59, 61, 64,
B 5, 6, 7, 8, 9, 10, 11, 12, 13, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,
C 56, 59, 61, 64,
D 5, 6, 7, 8, 9, 10, 11, 13, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 2, 9, 11, 15, 17, 26, 27, 30, 31, 34, 38, 47, 48, 49, 50, 51, 52, 54, 55,
B 2, 3, 4, 26, 27, 30, 31, 33, 34, 37, 38,
C 2, 9, 11, 15, 17, 26, 27, 30, 31, 34, 38, 47, 48, 49, 50, 51, 54, 55,
D 2, 3, 4, 26, 27, 31, 33, 34, 37, 38,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
DNo mutationNo mutationNo mutationNo mutation
CNo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1K50 B:1K50 C:1K50 D:1K50

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1K50.ali
atm file:1K50.atm
cof file:1K50.cof
hbd file:1K50.hbd
html file:1K50.html
pdb file:1K50.pdb
ps file:1K50.ps
psa file:1K50.psa
rtf file:1K50.rtf
sst file:1K50.sst
tem file:1K50.tem