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Pfam Domains mapped on to the structure: 1DDT

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF02763 Diphtheria toxin, C domain PF02763 PF02763
2 A PF02764 Diphtheria toxin, T domain PF02764 PF02764
3 A PF01324 Diphtheria toxin, R domain PF01324 PF01324

Conserved Domain Database Superfamily Annotations: 1DDT

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1DDT 30066 cd01341 ADP_ribosyl - cl00283
2 1DDT 206957 cl00283 ADP_ribosyl superfamily - -
3 1DDT 66449 cl03704 Diphtheria_T superfamily - -
4 1DDT 65145 cl03165 Diphtheria_R superfamily - -
Structural Details of PDB entry 1DDT

Structural Details of PDB entry 1DDT

PDBid Chains Hinge Swapped Domain
1DDT A,B A:377-386,B:377-386 A:387-535,B:387-535

Swapped-domain interface residues and interactions:

Chains Residues
A 45, 46, 47, 72, 73, 98, 100, 141, 142, 143, 144, 305, 306, 307, 308, 311, 316, 317, 318, 319, 370, 371, 374, 375, 377, 378, 379, 380, 381, 382, 387, 388, 390, 395, 399, 411, 412, 413, 417, 419, 421, 423, 424, 425, 426, 427, 428, 430, 442, 443, 444, 446, 447, 451, 452, 453, 454, 455, 456, 458, 460, 474, 475, 476, 478, 481, 482, 483, 484, 486, 488, 492, 514, 515, 517, 522, 535,
B 45, 46, 47, 72, 73, 98, 100, 141, 142, 143, 144, 305, 306, 307, 308, 311, 316, 317, 318, 319, 370, 371, 374, 375, 377, 378, 379, 380, 381, 382, 387, 388, 390, 395, 399, 411, 412, 413, 417, 419, 421, 423, 424, 425, 426, 427, 428, 430, 442, 443, 444, 446, 447, 451, 452, 453, 454, 455, 456, 458, 460, 474, 475, 476, 478, 481, 482, 483, 484, 486, 488, 492, 514, 515, 517, 522,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 44, 50, 64, 65, 69, 97, 99, 140, 148, 179, 182, 272, 284, 287, 288, 309, 310, 367, 373, 386,
B 44, 50, 64, 65, 69, 97, 99, 140, 148, 179, 182, 272, 284, 287, 288, 309, 310, 367, 373, 386,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1DDT B:1DDT

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1DDT.ali
atm file:1DDT.atm
cof file:1DDT.cof
hbd file:1DDT.hbd
html file:1DDT.html
pdb file:1DDT.pdb
ps file:1DDT.ps
psa file:1DDT.psa
rtf file:1DDT.rtf
sst file:1DDT.sst
tem file:1DDT.tem