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Pfam Domains mapped on to the structure: 1B6D

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF13895 Immunoglobulin domain PF13895 PF13895
2 A PF13895 Immunoglobulin domain PF13895 PF13895
3 A PF13927 Immunoglobulin domain PF13927 PF13927
4 A PF13927 Immunoglobulin domain PF13927 PF13927
5 A PF00047 Immunoglobulin domain PF00047 PF00047

Conserved Domain Database Superfamily Annotations: 1B6D

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1B6D 212623 cl11960 Ig superfamily - -
2 1B6D 143323 cd07699 IgC_L - cl11960
3 1B6D 212623 cl11960 Ig superfamily - -
4 1B6D 212623 cl11960 Ig superfamily - -
Structural Details of PDB entry 1B6D

Structural Details of PDB entry 1B6D

PDBid Chains Hinge Swapped Domain
1B6D A,B A:40-45,B:40-45 A:1-39,B:1-39

Swapped-domain interface residues and interactions:

Chains Residues
A 36, 38,
B 36, 38,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 41, 42, 43, 44, 46, 49, 55, 87, 89, 94, 95, 96, 98, 99, 100, 118, 121, 123, 124, 133, 135, 160, 162, 163, 164, 176, 178, 212,
B 41, 43, 44, 46, 49, 55, 56, 87, 89, 94, 95, 96, 98, 99, 100, 112, 114, 116, 118, 135, 137, 138, 164, 172, 174, 205,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
AALA(43)THR, No mutationALA(43)THR, HIS(49)TYR, SER(30)ASN, SER(31)ASN,
BALA(43)THR, No mutationALA(43)THR, HIS(49)TYR, SER(30)ASN, SER(31)ASN,

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1B6D B:1B6D

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1B6D.ali
atm file:1B6D.atm
cof file:1B6D.cof
hbd file:1B6D.hbd
html file:1B6D.html
pdb file:1B6D.pdb
ps file:1B6D.ps
psa file:1B6D.psa
rtf file:1B6D.rtf
sst file:1B6D.sst
tem file:1B6D.tem