Motif    Start   End  Length   Motif
Motif1    26     30     5      [ATP][PEMR][QDR][AIVL][A]
Motif2    41     44     4      [FAC][VIL][VAYR][GA]


Motif marked on the alignment

                                   *****          ****                
d1ni3a  : LINYFTCG--EDEVRSWTIR-KGTKAPQAAGVIHTDFEKAFVVGEIH-YQDLFDYKTENA
d1nyra  : -INIQFPDGN-----KKAFD-KGTTTEDIAQSISPGLRKKAVAGKFNG------------
d1tkea  : MPVITLPDGS-----QRHYD-HAVSPMDVALDIGPGLAKACIAGRVNG------------
d1wxqa  : IPVYPVHDEQFGNVLPHVFLKKGSTPRDLAFKVHTDLGKGFLYAINARTK----------
d2dbya  : LLTFFTAG--EKEVRAWTVR-RGTKAPRAAGEIHSD-ERGFIRAEVIPWDKLVEAGGWAR


                                                                      
d1ni3a  : CRAAGKYLTKGKEYV-ESGDIAHWK--
d1nyra  : -------QLVDLTKPLETDGSIEIV--
d1tkea  : -------ELVDACDLIENDAQLSIITA
d1wxqa  : -------RRVGEDYELQFNDIVKIVSV
d2dbya  : AKERGWVRLEGKDYEVQDGDVIYVL-F