Reading input alignment file to find conserved blocks of secondary structure The input structure based alignment from Comparer _____________________________________________ >P1;d1bifa2 ---------------------------------------------------CEEEEECCCCHHHHH------------------------------CCCCC---CCCCC----HHHHHHHHHHHHHHHHH-----------CCC--CCEEEECCCHHHHHHHCCCC--------------------CCCEEC-------HHHCCCCCHHHCCC--CHHHHHH---------------HCHHHHHHHHHCCCCCCCC--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHHC--------------------------------------------------CCEEEEECHHHHHHHHHHHCC---------------CCCCCHHH-CCCCCCEEEEEEECC--------C--CEEEEEEEC--CCCCCCCCCCCCCCCCC------------------------------------------------------------CCCHHHHCCCCCCCC---- >P1;d1e58a- ------------------------------------------------CCEEEEEEC-CCCHHHHC------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHHHHHC-----------CCC--CCEEEECCCHHHHHHHHHHHH----------HHCCCC---CCEEEC-------HHHCCCCCHHHCCC--CHHHHHH---------------HHCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCHHHCCCCC--------------------------------CCCC-----CCCCHHHHHHHHHHHHHHCHHHHHHC----------------------------------------------CCCEEEECCHHHHHHHHHHHCC---------------CCHHHHHH-CCCCCCCCEEEEECC--------CCCEEEEEECCC----------------------------------------------------------------------------------HHHHHHHCCCCCCCCC >P1;d1h2ea- -------------------------------------------------CEEEEEEECCCCHHHHC------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHHCCCC-----------CCC----EEEECCCHHHHHHHHHHHC----------CC------CCCEEEC-------HHHCCCCCHHHCCC--CHHHHHH---------------HCHHHHHHHHHCHHHCCCC--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHHHCC-----------------------------------------------CCEEEEEECHHHHHHHHHHHCC---------------CCHHHCCCCCCCCCCCEEEEEEEC---------CEEEEEEEEEC--CCC-CCCCCC-------------------------------------------------------------------------------------- >P1;d1nd6a- ----------------------------------------------CEEEEEEEEEECCCCCCC-----CCCCCCCC-------------------CHHHCCCCCCCCC----HHHHHHHHHHHHHHHHHCC--CCCC--CCCCHHHEEEEEECCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEE-CHH-HCCCCCCCCC----CCHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHCCC--------------------------------CCCHHHHHHHCHHHHHHHHHCCCC------CCCCC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCC----------------CCCCEEEEEECHHHHHHHHHHCCCCCC---------------------CCCCCCCEEEEEEEEEC--C----EEEEEEEEECCC-------------CCCC--EECCCCCCC-------CEEEHHHHHHHHHHHCCCCHHHHCCC------------------------------------ >P1;d1qfxa- CCCCCCC-------CHHHCHHHCCCCCCCCCCCC-CCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-------CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH-------HEEE-EEECCCHHHCCCCCCCCCCC-------------CCCCCC--CCCCCHHH---HHHHHHHHHCC----------------------------CCCCC----HHHHHH-HHHHHHHHCCCC----CC-CCCHHHCCHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHH---------CHHH---------HCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCHHHCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECCEEECCC---------------------CC-CCCHHH--CEEHHHHHHHHHH-HCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >P1;d1qwoa- ------CEECCCEECCCHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC----CCCCCC----HHHHHHHHHHHHHHHHHCHHHHC--------CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCHHHH--------CCCHHHHHHHHHHHHHHH---HHHHHHHHHCC----------------------------CCCCC----HHHHHH-HHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCHHHHCCCCCEEEEEEEEEC---CC-CCCEEEEEECCEECCCC---------------------CC-CCCCCC--CEEHHHHHHHCHHHHHCCCHHHHC------------------------------------- >P1;d1v37a- --------------------------------------------------CEEEEEECCCCHHHHH------------------------------CCCCCC-CCCCCC----HHHHHHHHHHCCCCC-------------CC-----CEEECCCHHHHHHHHHCCC--------------------CCEEC-------HHHCCCCCHHHCCC--CHHHCC------------------HHHHHHHHC-CCCCCCC--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HCC----------------------------------------------------CCEEEEECHHHHHHHHHHCC-----------------------CCCCCCCCCEEEEECCC------------EEEEEECC--C----------------------------------------------------------------------------------------------- >P1;d2a6pa- ------------------------------------------------CCCCEEEEECCCCCCHHH------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHHHHCC-----------CCC--CCEEEECCCHHHHHHHHHC------------CC-------CCCEEC-------HHHCCCCCHHHCCC--CHHHHHC---------------CCC----CC--CHHHHCCC--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHHHCC-----------------------------------------------CCCEEEEECHHHHHHHHHHHCC---------------CCHHHHHH-CCCCCCCEEEEEEEC---------CEEEEEEEEEC--CC---------------------------------------------------------------------------------------------- >P1;d2wnha1 ---------------------------------------------CEEEEEEEEEEECCCCCCCHHHHHHHHHHHCC-------------------CCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCEEEEECCCHHHHHHHHHHHHHHCC------------CCCCCCCCCCC--CCCCCCCHHHCHHHCCC---HHHHHHHHHHHHC-CHHHHHHHCHHHHHHHHHHHCCC-------CCCCHHHH-CCCCEEECCCC-CEEEC-CHHHHHH-HHHHHHHHHHCCCCHH--HHCCCCCCCHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHCC------------------CCCCCCCEEEEEECHHHHHHHHHHHCC-CC--CCC------------CCCCCCCCCCCEEEEEEEEECCCC----CEEEEEEEEECC-HHHHHHCCCCCCCCCCEEEECCCCCC-EEEC-CEEEEEHHHHHHHHCCCCCHHHCCCCCCCCC--------------------------------- >P1;d3e9da- -----------------------------------------------CEEEEEEEEECCCCHHHHC------------------------------CCCCCCCCCCCCC----HHHHHHHHHHHHHCCCC-----------CCC----EEEECCCHHHHHHHHHHHH----------CCCCCC--CCCEEEC-------HHHCCCCCHHHCCC--CHHHHHH----------------HHHHHCCCCC---CCCCC--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHHHHHHHCHHHCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHC------CCCCCCCCCCHHHHC--CCCCCCCEEEEEEEEEEECCEEEEEEEEEEEEEEC--CCC--------------------------------------------------------------------------------------------- >P1;d3ntla1 -------------------------------------------CCCEEEEEEEEEEECCCCCCCHHHHHHHHHCCCC-------------------CCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC------------CCCCCEECCCCCCCCCHHHCCCCC---CCCHHHHHHHHHHHHHHHH-----CCC-CHHHHHHHHHHCCHHHCHHHHCCCCCCCCC-CCCEEECC-CCCCCEEECHHHHHHH-HHHHHHHHHHHCCCHH--HCHHHCCCCHHHHHHHHHHHHHHHHHHHCC---HHHHHHHCHHHHHHHHHHHCC------------------CHHHCCCEEEEEECHHHHHHHHHHCCCCCC--CCC------------CCCC-CCCCCCEEEEEEEEECCCC----EEEEEEEEEECC-HHHHHCCCCCCCCCCCEEEEECCCCC-CCCC-CC-CEEHHHHHHHHHHHC---------------------------------------------- >P1;d4arua- ------------------------------------------CCCCCEEEEEEEEEECCCCCCC-CCCHHHHHCCCC-------------------CCCCCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHCC------------CCCCCCEECCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHCHHHCHHHHH--CCCHHHHCCCEEEECCCCCCEEEECHHHHHHH-HHHHHHHHHHCCCC----CCHHHCCCCHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------CCCCCCCEEEEEECHHHHHHHHHHHCC-CC--CCC------------CCCC-CCCCCCEEEEEEEECC-CC----CEEEEEEEEECC-HHHHHCCCCCCCCCCCEEEECCCCCCCCCCC-CC-CEEHHHHHHHHHHHCCHHHCCC--------------------------------------- >P1;d4ij5a- -------------------------------------------------CEEEEEEECCCCCCCCC------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHHHCCC-----------CCC----EEEECCCHHHHHHHHHHHH----------CC------CCCEEEC-------HHHCCCCCHHHCCC--CHHHHHH---------------HCHHHHHHHHHCHHHCCCC--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHHHCC-----------------------------------------------CCEEEEEECHHHHHHHHHHHHC---------------CCHHHHHH-CCCCCCCEEEEEECC---------CCEEEEEEEEC--HHHHHHCCCCCCCC---------------------------------------------------------------------------------- >P1;d5zkka- --------------------------------------------------CEEEEEECCCCHHHHC------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHHCC-------------CCC----EEEECCCHHHHHHHHHHHC------------------CCCEEEC-------CCC-CCCCHHHCCC--CC-CCCC-----------------CHHHHHHHHCHHHCCCC--------------------------------------------------------------CCCCHHHHCC-HHHHHH-HHC-CCC-----------------------------------------------CCEEEEEECHHHHHHHHHHHHC---------------CCHHHHHH-CCCCCCCEEEEEC-----------CCCEEEEEEEC--CCC--------------------------------------------------------------------------------------------- >P1;d6nrua- ---------------------------------------------------CEEEEECCCCHHHHC------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHHCCCC-----------CCC----EEEECCCHHHHHHHHHHHC----------C----C--CCCEEEC-------HHHCC-CCHHHC-C--CCCCCCC----------------CHHHHHHHHHCCCCCCCC--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHHHC----------------------------------------------CCC-CEEEEECHHHHHHHHHHHCC----------------CCCCCC--CCCCCCCEEEEEEE----CC-----EEEEEEEEEC--CCCCCC------------------------------------------------------------------------------------------ PSA >P1;d1bifa2 ---------------------------------------------------100000000052123------------------------------53202---51300----63055007402710672-----------b08--80501005250024006209--------------------391744-------73031150130352--1183007---------------5256200310330155403--------------------------------------------------------------80200330473065117-40571--------------------------------------------------93000000100000000401a---------------384a6002-170300001203458--------a--806366250--807018210740b3184------------------------------------------------------------a04695026311b37---- >P1;d1e58a- ------------------------------------------------842400003-02041364------------------------------230000-521500----a6047105700620654-----------a14--031000020410130062007----------30a067---051431-------13001001030025--3137009---------------7585840541232274304608593a4001538308a077--------------------------------a411-----30000350271014004730143046----------------------------------------------a35000000210000002501a---------------26586048-220010100001037--------a18145332047----------------------------------------------------------------------------------9a81884287460648 >P1;d1h2ea- -------------------------------------------------60201001001062154------------------------------631003-530703----720450055017305a2-----------a03----0000021700330052028----------b3------b040442-------63021030330024--2385059---------------3458406203720550719--------------------------------------------------------------60250540291046005-4007617-----------------------------------------------752000000310000000204a---------------27236025834012000010405d---------b6251441032--810-482461-------------------------------------------------------------------------------------- >P1;d1nd6a- ----------------------------------------------581300000000000004-----40054071-------------------55a4066311201----8404730540051036206--a107--521475204010041610240052003000205bb42637966416050524-53a-7090040105----804208403540671---86036407523b207800840527--------------------------------958062013400100400422a3b------12b10-7a8114304400110021100024263002000020033004105501867----------------922300000001100000000040053---------------------61040100000001449--7----712000200145-------------9680--551504805-------55041a40372065010862863077------------------------------------ >P1;d1qfxa- 7887989-------7ab65121200010021706-569191721a30702000000000010033930640560073046-2b7067505104a0910047745012006734300252048105603920261085-------963110000010000100030030007b5057-------1000-1013165730010000308b-------------a32880--83306307---60182038307----------------------------90a06----271012-000000000003----49-0601800547002000000103000200103--93130000000610040043---------11a7---------08200000011510000000060030ba602496127---b2404001000000000001040862b71a77200000002000106---------------------a1-280036--0021960283078-60370283090599244803002839572830647783752128254 >P1;d1qwoa- ------117276004445810210010000000365315408419507030000000-0012038941930691075027608615a605205819070----834700----50036001100110052049203--------61301000012a2024006201600271088185086375080304052589-34000223108702--------837318703790155003---a0273038303----------------------------70807----362020-00000000000338604620200600758104302001004100220410--7001000000000010003548090701039920767820138240000001120000000002007409604577336067060000010000000000000308---83-a4300000000000403---------------------80-935930--00319301820740370040b605------------------------------------- >P1;d1v37a- --------------------------------------------------3401002001062465------------------------------831103-352601----a5033105405b303-------------a2-----6020020300330061041--------------------a0742-------54020020071113--348705------------------871371066-06c0706--------------------------------------------------------------c0220950372037109-709----------------------------------------------------64000000330010003409-----------------------48070610000003167------------60353353--b----------------------------------------------------------------------------------------------- >P1;d2a6pa- ------------------------------------------------491300002002072147------------------------------931108-451703----a6046005300810982-----------a06--8200000224002100710------------91-------a14643-------62020050361214--2474038---------------846----90--40052005--------------------------------------------------------------80163860372046007-3038306-----------------------------------------------8200000001100200002016---------------46043027-180510000002269---------a7241442433--32---------------------------------------------------------------------------------------------- >P1;d2wnha1 ---------------------------------------------72301000000000000038a21940280071-------------------80270b2821300----b1034002100321064028280069-b506a70010000034103100600050005------------c0d180441aa--b2030020464960406---5970371069409-7098238814711650460003a-------a5805109-35061616a81-70402-0022003-0010000000161548--500256067175044003001121103110---410022200000410071052------------------a09190400000011400000010080-40--606------------602500000100000010313856----640000000003-06201732203a84612442152980-571a-2200031a60163028313970059190518--------------------------------- >P1;d3e9da- -----------------------------------------------3040000001001062155------------------------------8200028352503----93057203100620471-----------501----000004040022005201a----------30650b--b181252-------62030121470115--5572258----------------20a9495768---70206--------------------------------------------------------------a0154760160046009-50054016516b326-----------------a8879384182567240003b180000000023005100400064------3802109a186b402--360210000001020436a7506043010000015--701--------------------------------------------------------------------------------------------- >P1;d3ntla1 -------------------------------------------3a11504000000000000137b18a20740032-------------------a11a062711400----72005004200400130006280069c6408aa2030100015101100640071005------------c0b060424883942071020104---4858712660471046228-----61a-079006101700507501206777642019-49170506-5574050760042010-0010000020121598--500143074972161004012011300020---650060005300720041015------------------738903400000012100100020060471--905------------7030-3000000000020307769----530010000000-26102734701297402114030470-516a-71-004095037105a22---------------------------------------------- >P1;d4arua- ------------------------------------------23b4170430000000001005-704850420023-------------------9039052740400----620350022006001410173700468b407661000000132102300510062005------------a0b180332a62971010030051811505---39604820592093507600741590072017003058031086--62700921606020597026050520001005-00000000201109----710153076982161005002121300020---610030200000100052030c2b14816----------821981400000011400000000070-70--907------------9010-4000000000010119-87----531000100002-17203733704398404225080470a6049-52-0000920272057202770308--------------------------------------- >P1;d4ij5a- -------------------------------------------------30200000000052136------------------------------030004-530402----84045006300730274-----------702----1000011600240043009----------42------b2a0551-------83021030160131--2175059---------------6259415303630360708--------------------------------------------------------------a0220650282037005-5048703-----------------------------------------------8410000000000000000038---------------47136027-170100010102048---------87131462231--910b9332824a01---------------------------------------------------------------------------------- >P1;d5zkka- --------------------------------------------------1400001000052155------------------------------931005-342901----970561033018618-------------a05----200002260024005300b------------------b480452-------980-0040690234--44-60ac-----------------46316204626720107--------------------------------------------------------------2c51046116-017204-700-718-----------------------------------------------8520000002000100002019---------------39143026-1a06100001050-----------ba162342253--a12--------------------------------------------------------------------------------------------- >P1;d6nrua- ---------------------------------------------------000002001050355------------------------------832103-481702----96037106702610590-----------704----0000041700230062004----------b----2--a163431-------41002-420501-4--2675096----------------279606613963262503--------------------------------------------------------------90201451172048028-416607----------------------------------------------838-00000001400000002038----------------826468--27041000000228----a8-----8052532225--870935------------------------------------------------------------------------------------------ Translating the sequences ---------------------------------------------------*EEEEECCCC***H*------------------------------CCCCC---CCCCC----HHHHHHHHHHHHH****-----------CCC--**EEEECCCHHHHHHH****--------------------CC*EEC-------***CCCCCHHHCCC--*HHH***---------------***HHHHHHHH******C*--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHH*--------------------------------------------------C*EEEEECHHHHHHHHHHHCC---------------********-CCCCCC*EEEEEE**--------*--*EEEEEE*C--*****************------------------------------------------------------------***************---- ------------------------------------------------***EEEEE*-CCC***H*------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHH****-----------CCC--**EEEECCCHHHHHHHHHHH*----------******---CC*EEC-------***CCCCCHHHCCC--*HHH***---------------***HHHHHHHH******C**********************--------------------------------****-----CCCCHHHHHHHHHHHHH**HHH****----------------------------------------------CC*EEEE*CHHHHHHHHHHHCC---------------********-CCCCCCC*EEEEE**--------***EEEEEE**C----------------------------------------------------------------------------------**************** -------------------------------------------------**EEEEEECCCC***H*------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHH****-----------CCC----EEEECCCHHHHHHHHHHH*----------**------*CC*EEC-------***CCCCCHHHCCC--*HHH***---------------***HHHHHHHH******C*--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHH*C*-----------------------------------------------CC*EEEEECHHHHHHHHHHHCC---------------*********CCCCCCCEEEEEE**---------**EEEEEEE*C--***-******-------------------------------------------------------------------------------------- ----------------------------------------------*****EEEEEECCCC***-----********-------------------C***CC*CCCCCC----HHHHHHHHHHHHH******--****--*CCC****EEEE*CCHHHHHHHHHHH********************CC*EE*-***-*****CCCCC----CC***HHH*******---***********HHHHHHHH*****--------------------------------************************------***CC-CHHHHHHHHHHHHH*HHHH*C******************************----------------**CC*EEEEECHHHHHHHHHH*CC***---------------------CCCCCCCEEEEEE****--*----**EEEEEEE*C*-------------****--*********-------**************************------------------------------------ *******-------********************-****************EEEEEECCCC***H***************-***************CCCCC***CCCCC******HHHHHHHHHHH***********-------****EEEE*CCHHHHHHHHHHH**********-------****-*EEC**********CCCCC*-------------******--********---HHHHHHHH***----------------------------*****----******-************----**-******CCHHHHHHHHHHHHH*HHHH*C***--********************---------****---------*CC*EEEEECHHHHHHHHHHHCC**************---********CCCCCCEEEEEE*************EEEEEE********---------------------**-******--*************-*********************************************** ------*********************************************EEEEE*-CCC***H*******************************CCC----CCCCCC----HHHHHHHHHHHHH**********--------****EEEE*CCHHHHHHHHHHH***********************EEC****-*****CCCCCHHH*--------******************---HHHHHHHH***----------------------------*****----******-*************************CCHHHHHHHHHHHHH*HHHH*C***--*******************************************CC*EEEE*CHHHHHHHHHH*CC**************************CCCCCEEEEEE****---**-***EEEEEE********---------------------**-******--************************------------------------------------- --------------------------------------------------*EEEEEECCCC***H*------------------------------CCCCCC-CCCCCC----HHHHHHHHHH*****-------------CC-----*EEECCCHHHHHHHHH***--------------------C*EEC-------***CCCCCHHHCCC--*HHH**------------------*HHHHHHH*-*****C*--------------------------------------------------------------CCCCHHHHHHHHHHHHH-H**----------------------------------------------------C*EEEEECHHHHHHHHHH*C-----------------------**CCCCCCCEEEEE***------------EEEEEE*C--*----------------------------------------------------------------------------------------------- ------------------------------------------------****EEEEECCCC***H*------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHH****-----------CCC--**EEEECCCHHHHHHHHH*------------**-------CC*EEC-------***CCCCCHHHCCC--*HHH***---------------***----**--******C*--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHH*C*-----------------------------------------------CC*EEEEECHHHHHHHHHHHCC---------------********-CCCCCCCEEEEEE**---------**EEEEEEE*C--**---------------------------------------------------------------------------------------------- ---------------------------------------------******EEEEEECCCC***H************-------------------CCCCCC*CCCCCC----HHHHHHHHHHHHH*************-*CCC****EEEECCCHHHHHHHHHHH*****------------***CC***C**--******C***CHHHCCC---HHH**********-**********HHHHHHHH*****-------********-***********-*****-*******-****************--*****CCCCHHHHHHHHHHHHH*HH***C*---*********************------------------*****CC*EEEEECHHHHHHHHHHHCC-**--***------------****CCCCCCCEEEEEE*******----**EEEEEEE*C*-**************************-****-*******************************--------------------------------- -----------------------------------------------****EEEEEECCCC***H*------------------------------CCCCCC*CCCCCC----HHHHHHHHHHHHH****-----------CCC----EEEECCCHHHHHHHHHHH*----------******--*CC*EEC-------***CCCCCHHHCCC--*HHH***----------------**HHH*****---***C*--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHH***********-----------------**********************CC*EEEEECHHHHHHHHHHH***------***************--CCCCCCCEEEEEE*************EEEEEEE*C--***--------------------------------------------------------------------------------------------- -------------------------------------------********EEEEEECCCC***H************-------------------CCCCCC*CCCCCC----HHHHHHHHHHHHH***************CCC****EEEECCCHHHHHHHHHHH*****------------***CC*E*C**********CCCCC---CCC***HHH**********-----***-**HHHHHHHH******C*************-********-****************-****************--*****CCCCHHHHHHHHHHHHH*HHHH*C*---*********************------------------*****CC*EEEEECHHHHHHHHHH*CC***--***------------****-CCCCCCEEEEEE*******----**EEEEEEE*C*-**************************-****-**-***************---------------------------------------------- ------------------------------------------*********EEEEEECCCC***-************-------------------CCCCCC*CCCCCC----HHHHHHHHHHHHH***************CCC****EEEECCCHHHHHHHHHHH*****------------***CC*EEC**********CCCCC***CCC---HHH*********************HHHHHHHH******C*****--********************************-**************----*****CCCCHHHHHHHHHHHHH*HHHH*C*---*****************************----------*****CC*EEEEECHHHHHHHHHHHCC-**--***------------****-CCCCCCEEEEEE****-**----**EEEEEEE*C*-*******************************-**-**********************--------------------------------------- -------------------------------------------------**EEEEEECCCC*****------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHH****-----------CCC----EEEECCCHHHHHHHHHHH*----------**------*CC*EEC-------***CCCCCHHHCCC--*HHH***---------------***HHHHHHHH******C*--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHH*C*-----------------------------------------------CC*EEEEECHHHHHHHHHHH*C---------------********-CCCCCCCEEEEEE**---------**EEEEEEE*C--**************---------------------------------------------------------------------------------- --------------------------------------------------*EEEEEECCCC***H*------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHH**-------------CCC----EEEECCCHHHHHHHHHHH*------------------*CC*EEC-------***-CCCCHHHCCC--**-****-----------------*HHHHHHHH******C*--------------------------------------------------------------CCCCHHHH**-HHHHHH-HH*-*C*-----------------------------------------------CC*EEEEECHHHHHHHHHHH*C---------------********-CCCCCCCEEEEE*-----------***EEEEEE*C--***--------------------------------------------------------------------------------------------- ---------------------------------------------------*EEEEECCCC***H*------------------------------CCCCCC-CCCCCC----HHHHHHHHHHHHH****-----------CCC----EEEECCCHHHHHHHHHHH*----------*----*--*CC*EEC-------***CC-CCHHHC-C--*******----------------**HHHHHHHH******C*--------------------------------------------------------------CCCCHHHHHHHHHHHHH-HHHH*C----------------------------------------------**C-*EEEEECHHHHHHHHHHHCC----------------******--CCCCCCCEEEEEE*----**-----*EEEEEEE*C--******------------------------------------------------------------------------------------------ 53254.tem _________________________________ ---------------------------------------------******EEEEEECCCC***H************-------------------CCCCCC*CCCCCC----HHHHHHHHHHHHH***********----CCC****EEEECCCHHHHHHHHHHH*****------**---****CC*EEC****-*****CCCCCHHHCCC--*HHH********---**********HHHHHHHH******C*-----------------------*-***----******-**************-----****CCCCHHHHHHHHHHHHH*HHHH*C**--*********************------------------*****CC*EEEEECHHHHHHHHHHHCC***--***-------*********CCCCCCCEEEEEE****-**---***EEEEEEE*C*-****************--------**-****-*--**********************--------------------------------------- Structural block scores 0 44 - 4.6 H 75.0 75.0 75.0 75.0 17.1 12.3 75.0 75.0 75.0 75.0 72.0 70.4 75.0 75.0 75.0 45 50 * 3.1 M 75.0 39.8 51.0 15.3 2.0 2.5 63.0 39.8 2.2 26.2 1.8 3.2 50.5 62.7 75.0 51 56 E 4.9 H 0.2 1.2 0.7 0.0 0.0 0.0 1.2 0.8 0.0 0.2 0.0 0.0 0.3 0.8 0.3 57 60 C 4.9 H 0.0 19.2 0.2 0.0 0.2 19.0 0.2 0.5 0.0 0.2 0.0 0.2 0.0 0.0 0.2 61 63 * 1.0 P 2.7 2.7 3.0 1.3 1.0 1.7 4.0 3.3 1.0 3.0 1.3 1.7 2.7 2.7 2.7 65 76 * 3.6 M 69.0 69.1 69.1 26.8 3.6 4.5 69.2 69.3 3.7 69.2 4.1 2.9 69.2 69.2 69.2 77 95 - 4.6 H 75.0 75.0 75.0 75.0 8.1 4.3 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 96 101 C 4.8 H 14.5 0.8 2.2 5.1 3.2 38.7 2.7 3.7 4.8 2.0 4.8 4.3 1.2 3.0 2.8 103 108 C 5.0 H 14.0 2.2 3.0 1.3 1.3 3.7 2.8 3.3 2.3 3.0 2.2 2.5 2.3 3.2 3.7 109 112 - 4.8 H 75.0 75.0 75.0 75.0 5.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 113 125 H 4.9 H 3.1 3.7 3.0 3.2 2.8 1.4 3.9 3.3 2.1 2.9 1.8 2.0 3.1 3.8 3.7 126 136 * 3.0 P 49.1 49.1 49.3 16.2 3.3 9.1 61.6 49.5 2.8 48.8 1.8 2.2 48.9 62.2 49.0 137 140 - 4.4 M 75.0 75.0 75.0 40.5 75.0 75.0 75.0 75.0 25.4 75.0 8.4 7.4 75.0 75.0 75.0 141 143 C 4.7 H 6.5 5.2 4.5 2.3 75.0 75.0 29.2 5.5 3.7 2.0 4.0 3.7 3.0 5.2 3.7 144 147 * 3.4 M 39.5 38.2 75.0 3.5 4.8 2.5 75.0 40.0 4.4 75.0 5.8 3.2 75.0 75.0 75.0 148 151 E 5.0 H 1.5 0.2 0.0 1.2 0.2 0.2 2.0 0.0 0.2 0.0 1.0 0.0 0.2 0.5 0.0 152 154 C 4.8 H 2.3 0.7 1.0 1.7 0.3 1.0 0.7 1.3 1.0 1.3 0.3 1.3 0.7 1.3 1.7 155 165 H 4.9 H 2.5 1.5 2.0 1.8 0.4 2.5 1.8 8.2 1.4 1.5 1.6 1.3 1.7 1.8 1.8 166 170 * 3.4 M 75.0 61.4 61.6 1.0 2.0 3.0 60.2 75.0 2.0 62.1 2.6 2.6 61.8 62.3 60.8 171 176 - 4.5 M 75.0 75.0 75.0 5.7 17.2 4.3 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 177 178 * 3.4 M 75.0 1.5 7.2 4.5 75.0 2.5 75.0 5.0 75.0 1.5 75.0 75.0 3.0 75.0 43.2 179 181 - 4.2 M 75.0 5.5 75.0 7.3 75.0 5.7 75.0 75.0 75.0 3.7 75.0 75.0 75.0 75.0 75.0 182 185 * 3.5 M 75.0 58.0 59.1 4.2 19.0 5.0 75.0 75.0 25.2 43.2 24.8 24.2 59.1 59.1 40.6 186 187 C 4.6 H 6.0 2.5 2.0 2.5 37.5 1.5 42.8 5.8 4.5 4.5 3.0 4.5 6.2 6.0 3.5 189 190 E 4.7 H 5.5 3.5 4.0 3.5 0.5 2.0 5.5 5.0 4.0 3.5 3.0 3.0 5.0 4.5 3.5 192 195 * 4.0 M 75.0 75.0 75.0 23.4 4.8 6.0 75.0 75.0 42.8 75.0 7.0 6.9 75.0 75.0 75.0 197 201 * 2.1 P 32.0 30.8 31.8 3.2 0.2 1.4 31.8 31.6 1.0 31.6 2.0 0.4 32.2 33.4 31.0 202 206 C 4.8 H 2.0 0.4 1.2 2.0 2.2 1.6 0.8 1.4 3.2 1.4 1.4 1.8 1.2 15.8 16.6 207 209 H 4.4 M 1.3 1.0 2.0 75.0 53.8 5.0 2.7 3.3 5.0 3.7 75.0 3.3 2.3 5.0 1.7 210 212 C 4.6 H 3.3 2.3 2.0 27.7 75.0 50.7 1.7 2.3 3.3 2.3 5.7 3.3 1.7 3.0 26.7 213 214 - 4.6 H 75.0 75.0 75.0 3.0 75.0 75.0 75.0 75.0 75.0 75.0 7.5 75.0 75.0 75.0 75.0 216 218 H 4.4 M 4.0 3.7 5.3 4.0 75.0 75.0 6.3 5.0 7.0 4.7 4.7 6.0 4.3 28.3 6.0 219 226 * 2.9 P 47.8 48.0 48.6 12.6 22.7 4.6 56.9 48.2 3.8 48.8 3.0 3.8 48.6 49.8 48.8 227 229 - 4.2 M 75.0 75.0 75.0 52.7 52.7 6.3 75.0 75.0 28.0 75.0 28.3 4.0 75.0 75.0 75.0 230 239 * 3.5 M 53.7 54.5 53.7 3.6 24.7 23.9 68.3 54.3 5.0 60.2 40.0 3.5 53.8 67.9 60.9 240 247 H 4.7 H 1.9 3.6 3.8 4.6 3.5 4.2 3.9 57.4 3.8 7.3 3.0 3.2 3.9 3.5 5.0 248 253 * 1.7 P 3.0 3.5 3.2 15.5 39.2 38.5 16.8 1.8 14.8 39.0 2.8 2.7 3.2 3.0 4.0 256 278 - 4.3 M 75.0 10.8 75.0 75.0 75.0 75.0 75.0 75.0 20.0 75.0 10.3 9.9 75.0 75.0 75.0 281 283 * 4.0 M 75.0 75.0 75.0 75.0 5.5 5.0 75.0 75.0 3.7 75.0 3.0 3.7 75.0 75.0 75.0 284 287 - 4.3 M 75.0 75.0 75.0 24.2 75.0 75.0 75.0 75.0 19.2 75.0 3.2 1.8 75.0 75.0 75.0 288 293 * 3.8 M 75.0 75.0 75.0 2.0 2.2 2.2 75.0 75.0 1.2 75.0 1.2 1.0 75.0 75.0 75.0 295 308 * 3.8 M 75.0 75.0 75.0 2.7 10.9 1.0 75.0 75.0 1.0 75.0 0.9 0.9 75.0 75.0 75.0 309 313 - 4.3 M 75.0 18.3 75.0 75.0 47.6 3.6 75.0 75.0 33.4 75.0 34.4 61.4 75.0 75.0 75.0 314 317 * 3.8 M 75.0 75.0 75.0 22.4 1.8 0.5 75.0 75.0 1.8 75.0 1.2 1.8 75.0 75.0 75.0 318 321 C 4.8 H 2.5 0.8 3.2 20.8 3.2 3.2 4.1 3.8 4.8 4.1 3.5 4.0 3.6 5.1 2.8 322 334 H 5.0 H 3.1 2.1 2.8 2.9 1.1 1.8 3.5 3.5 2.0 3.3 2.5 2.7 2.9 8.2 3.3 336 339 H 4.7 H 4.0 2.0 2.8 1.0 0.5 0.8 22.8 3.5 1.2 2.5 1.0 1.0 4.2 20.5 4.2 342 343 * 3.0 P 75.0 5.0 41.0 1.0 0.5 2.5 75.0 40.5 37.5 3.5 37.5 37.5 39.0 41.5 75.0 344 345 - 4.4 M 75.0 75.0 75.0 3.0 39.0 37.5 75.0 75.0 75.0 3.0 75.0 75.0 75.0 75.0 75.0 346 366 * 3.8 M 75.0 75.0 75.0 1.6 5.2 4.4 75.0 75.0 1.5 58.5 2.1 1.1 75.0 75.0 75.0 367 384 - 4.5 M 75.0 75.0 75.0 55.4 59.4 4.4 75.0 75.0 75.0 9.3 75.0 44.2 75.0 75.0 75.0 385 389 * 3.8 M 75.0 75.0 75.0 47.2 60.0 2.8 75.0 75.0 5.9 3.1 5.4 5.6 75.0 75.0 47.2 390 391 C 4.8 H 42.0 6.8 6.0 2.5 5.0 3.0 40.5 5.0 2.0 4.0 3.5 2.5 6.0 6.5 41.5 393 397 E 4.9 H 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 399 409 H 4.9 H 0.5 0.9 0.5 0.2 0.6 0.3 1.3 0.5 0.5 1.4 0.5 0.5 0.0 0.5 0.6 410 411 C 4.6 H 5.8 5.8 7.2 2.0 3.0 1.0 42.0 3.5 4.0 3.0 3.0 3.5 5.5 5.0 5.5 412 414 * 3.9 M 75.0 75.0 75.0 2.7 1.0 3.7 75.0 75.0 26.3 51.3 4.0 27.3 75.0 75.0 75.0 415 416 - 4.6 H 75.0 75.0 75.0 75.0 11.0 4.5 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 417 419 * 3.9 M 75.0 75.0 75.0 75.0 2.7 3.3 75.0 75.0 4.0 51.0 4.7 5.3 75.0 75.0 75.0 420 426 - 4.5 M 75.0 75.0 75.0 75.0 14.9 4.4 75.0 75.0 75.0 4.4 75.0 75.0 75.0 75.0 75.0 427 435 * 2.6 P 12.1 12.7 3.9 75.0 19.1 2.1 59.7 11.2 43.1 20.3 42.8 42.8 11.7 11.4 28.8 436 442 C 4.9 H 1.6 0.9 1.4 1.7 0.1 0.1 2.0 2.1 0.1 1.7 11.1 11.3 1.3 2.6 2.0 443 448 E 4.9 H 1.7 0.2 0.8 0.0 0.2 0.0 0.7 0.7 0.2 0.2 0.3 0.2 0.7 1.0 0.7 449 452 * 2.5 P 40.8 40.0 42.1 4.5 3.0 2.8 40.8 41.2 1.8 2.2 2.5 2.8 40.5 75.0 58.2 454 455 * 3.6 M 75.0 75.0 75.0 41.0 6.8 75.0 75.0 75.0 5.5 8.8 7.5 7.5 75.0 75.0 9.2 456 458 - 4.5 M 75.0 75.0 75.0 75.0 6.2 28.7 75.0 75.0 75.0 3.7 75.0 75.0 75.0 75.0 75.0 459 461 * 2.6 P 53.5 6.5 30.8 27.7 5.3 5.8 75.0 30.8 28.3 2.3 27.7 27.7 30.0 32.3 52.7 462 468 E 4.9 H 4.4 2.6 2.4 0.6 0.0 0.0 13.6 3.0 0.0 0.1 0.1 0.3 2.7 2.9 2.7 473 488 * 3.5 M 3.8 75.0 34.9 57.7 61.4 61.4 71.0 65.9 3.5 61.4 3.4 3.8 13.4 61.8 48.9 489 496 - 4.2 M 66.1 75.0 75.0 21.2 75.0 75.0 75.0 75.0 3.6 75.0 1.9 3.1 75.0 75.0 75.0 497 498 * 3.8 M 75.0 75.0 75.0 4.0 5.8 4.0 75.0 75.0 4.0 75.0 3.5 3.5 75.0 75.0 75.0 500 503 * 4.0 M 75.0 75.0 75.0 75.0 2.5 6.5 75.0 75.0 5.9 75.0 5.6 4.8 75.0 75.0 75.0 506 507 - 4.5 M 75.0 75.0 75.0 40.0 75.0 75.0 75.0 75.0 1.0 75.0 38.0 38.5 75.0 75.0 75.0 508 529 * 3.9 M 75.0 75.0 75.0 3.7 6.8 3.2 75.0 75.0 3.5 75.0 26.1 2.9 75.0 75.0 75.0 530 568 - 4.6 H 47.9 46.6 75.0 69.6 4.4 71.3 75.0 75.0 64.1 75.0 75.0 75.0 75.0 75.0 75.0 >>>>>>