Reading input alignment file to find conserved blocks of secondary structure The input structure based alignment from Comparer _____________________________________________ >P1;d1es9a- -------------------------CCHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHH--C----CCCEEEEECHHHHCHHH--------------------HCCHHHHC-HHH-------CEEEEECCCCC----------HHHHHH----HHHC---CCCCCC---CCCEEEEECCCCCC-----------------------------------------------------------------------------------CCCHHHHHHHH---H-HHHHHHHHHCC------C--CEEEEECCCCCCCCCC----------------------HHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCC----------------CCCC-----CCCCC-CCCCCCCHHHHH--HHHHHHHH--HHH---HHC-------------------------------------------------------- >P1;d1esda- ----------------------------------------------------------------CEEEEEECCCHHHHCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHCCC---CEEEEEEECCCCCCCHH----------HHCCCEEEHHHCEEECCHHHHCCCCCCEEEECCCHHHHCHHHHHHHHCCCCCCC--------------------------CCCCCCCCCCCCCHHHHHHHCCCC-----------HHHHHHHHHHHHHHHHH---H-HHHHHHHHHCC------CCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEEC-CHHHCCCCCCCCCCCCCCCCCCCEEEEE-----CCCCEEECCCCCCHHHHH--HHHHHHHH--HHH---HHCC------------------------------------------------------- >P1;d1flca2 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCHHHHHCEEECCCCCHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHCHHHCCCCCCC------------CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC---CCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHH--HHHHHHC---CCCEEECCEEECCCCCEECCCCCCCEEECCCEECCCC---CCCEEEEEEEEECCCCCCCCC---- >P1;d1k7ca- ------------------------------------------------------------------CEEEEECCCCCCCCCCCC-------------CCCCHHHHCHHHCC-------C-EE-EECCCCCCCHH----------HHHH--CCHHH----HHHHHCC-CC-CEEEECCCCCCCCCHHHCCCCCCCCCCC--------------------------CCEEE---EEECC----E--EEEEE---------------------CHHHHH---H-HHHHHHHHC----------CCEEEEECCCCCC------CCCCCCCCCCC---------------CHHHHHHHHHHHHH-CCEEEC-HHHHHHHHHHHHC---HHHHHHCCC--------------CCCCCCCHHHHH--HHHHHHHH--HHH---HHCC-HHHHHCCCCCCCCC---CC----------------------------------- >P1;d1yzfa1 -----------------------------------------------------------------CEEEEEEECHHHHCCCC-------------CCCCCHHHHHHHHHHHHCCCCC---EEEEEEECCCCC----------HHHHHH----HHHH---HCHHH----CCCEEEEECCCCCCCC------------------------------------------------------------------------------C-CCCCHHHHHHHH---H-HHHHHHCHH--------H----EEEECCCCCCC---C---------------CCCCCCHHHHH--HHHHHHHHHHHHC-CCCEEC-HHHHHHCC-------------------C-----HHHHCCCCCCCCCHHHHH--HHHHHHHH--HHH---HHCC-CCCC-------------------------------------------------- >P1;d1z8ha- --------------------------------------------------------------CCEEEEEEEEECHHHHCCCCCC--------------CCHHHHHHHHHHHHCC---EEEEE-EEEECCCCCHH----------HHCCH---H------HHHHCCCCCCCEEEEEECCHHHHCCCC-----------------------------------------------------------------------------CCCCCHHHHHHHH---H-HHHHHHHC-----------CCCEECCCCCCCCCCC-----------------------CHHHHHHHHHHHHHHHHHHH-CCCCCC-CHHHHCC------CCCHHHHHHHCC----------------CCCCCHHHHH--HHHHHHHCCHHHH---CCCC------------------------------------------------------- >P1;d1zmba1 ------CEEEEEECCCCCCCCC---------------------------CCCCCCCCCEECC--CCCCC--CCCCCC--CCC--------------CCCCCCHHHHHHHHHHCCC--CCCEEECCCCCCCCCHHHHCCCCHHHHHHHH----HHHH---CC--CC---EEEEEEEECCHHHCCC-------------------------------------------------------------------------------C---CCCCHHHHH---H-HHHHHHHHHCC------C--CCCCEEEECCCCCCCCC---------------HHHC---CCCCHHHHHHHHHHHHHHCCCEEEEC-CC--------------------------------CCCCCCCCCCCCHHHHH--HHHHHHHH--HHH---HCCC-CCCCCCCHHHHHHH---HHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCC >P1;d2apja1 CCCCCCEEEEEEECCCCCCCCEEECCCCCCEEECC-----------CCCHHHCC-CCCEEEECCCCCEEECCCCCCCCCCCC-------------CCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCCHHHHHHHH----HHHH---HHHHCC---EEEEEEEECCHHHCCC------------------------------------------------------------------------------HH---HHHHHHHHH---H-HHHHHHHHHCC------C--CCCCEEEEECCCCC---------------------------CCHHHHHHHHHHC--CCCCEEEEE-CC--------------------------------CCCCCCCCCCCCHHHHH--HHHHHHHH--HHH---HHHC------------------------------------------------------- >P1;d2hsja1 -------------------------C-------HHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCEEEEECHHHHC------------------------CCHHHHHCCCC-------CEEEEECCCCC----------HHHHHH----CHH----HHCCCC---CCCEEEEECCHHHHHC---------------------------------------------------------------------------------CCCHHHHHHHH---H-HHHHHHHHHCC------C--CEEEEECCCCCCCCHHH---------------HHHHCCCCHHHHHHHHHHHHHHHCCC-CEEEEC-CHHHCCCC----------------CCCC-----CHHHC-CCCCCCCHHHHH--HHHHHHHH--HHC-------------------------------------------------------------- >P1;d2o14a2 ---------------------------------------------------------------CCCCEEECCCCCCCCCCCCCC-----------CCCCCCCCC-CCCCCCC----CCC-EE-EC-CCCCCCHH----------HHHH--CCHHH----HHHCCCC-CC-CEE-CCCCCHHHCHHH------CCC----------------------------------------------------------------------------HHHHH---HCCCCHHHHCC----------CCEEEEECCCCCC-----CCCCCCCCCCCC--------------CCCCHHHHHHHHHHC-CCEEEC-HHHHHHHHHHHHC---HHHHHCCCC--------------CCCCCCCHHHHH--HHHHHHHH--HHH---HCCC-CCC--------------------------------------------------- >P1;d3bzwa1 ----------------------------------------------------------CCCCCCCCCEEEEEECCCCCCCCCHH-------------HCCCHHHHHHHHH-------CC-EE-EECCCCCCCHH----------HHHH----HHH----HHHHHHC-CCCCEEEEE-CHHHHHCCCCCCCCEEEEEEE--------------------------EEECCCCCEEEEE----E--EEECC-------------------CCCHHHHH---H-HHHHHHHHHCC--------CCEEEEECCCCCC-----CEECCCCCEECCCCCCCCCCC----CHHHHHHHHHHHHHHH-CCCEEC-HHHHCCCC-C------HHHH-HHEEEC-----------CCEEEEECHHHHH--C-CCCC-C--CHH---HCCC-CC---------------------------------------------------- >P1;d3dc7a1 --------------------------------------------------------------CCCCCCEEEEECCCCCCCCCCC---------------CCHHHHHHHHH-------CCCCC-EEEECCCCCCCCCC-------CCCC----HHH----HCCC-----CCCEEEEECCHHHHHCCCCCCCC-------------------------------------------------------CCC-------------------CCCHHHHC------CHHHHHHHCC--------CCCEEEEECCCCC-----C-CCC---CCCCCC-CCCCCC----CHHHHHHHHHCCH-HH-CCCEEE-HHHHCCCCCC------HHHHHHHCC---------------CCCCCCHHHHH--HHHHHHHH--HHH---HHC-------------------------------------------------------- >P1;d3rjta1 ---------------------------------------------------------------CCCCCEEECCCCCCC-CCCCCCEECCC-----CCCCCCHHHHHHHHHHHHCHHHCC-EE-EECCCCCCCHH----------HHHH----HHH----HHC-CC---CCCEEEE-CCHHHHHHHHCCC---------------------------------------CHHHCCC---------------------------------HHHHHHHH---H-HHHHHHHHHC-----------CEEEECCCCCC---------------CCCCC---CCH----HHHHHHH-CCHHHHHH-CCCEEC-HHHHHHHHHC------CCCHHHHCC---------------CCCCCCHHHHH--HHHHHHHH--HCC---CC--------------------------------------------------------- >P1;d4iyja- ----------------------------------CCCCCCCCCCCHHHHHHHHHHHHCCCC----CCCEEE-CCHHHHHHHH-------------------HCHHHHHHH-----------CEEECCCCCCC----------HHHHHH----HHHH---HCHHH----CCCEEEECCCHHHHCC------------------------------------------------------------------------------CCCCCCHHHHHHHH---H-C-CHHHHHC--------C--CEEEEECCCCCCC---C---------------CCCCCCCCHHHHCCHHHHHHHHC-CC-CCCEEC-CCCCCCCC----------------CCCC-----CHHHC-CCCCCCCHHHHHCCCCCCCHHH--HC--------------------------------------------------------------- >P1;d4q9aa- -----------------------------------------------------------CCCCCCCCCEEEEEECCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHCHHHCC-EE-EECCCCCCCHH----------HHHC----CCC----CCCHHH---CCCEEEEECCCHHHHHHHHC-------------------------------------------CCCC---------------------------------HHHHHHHH---H-HHHHHHHHHCC--------CCEEEEECCCCCC---------------CCCCCCHHHHC----CCHHHHHHHHHHHHHC-CCEEEC-HHHHHHHHCC------CCCHHHHCC---------------CCCCCCHHHHH--C-CCC--C--CCC----C--------------------------------------------------------- >P1;d4rsha- -----------------------------------------------------------------CCCEEEEECHHHHCCCC-------------CH-HHCHHHHHHHHCC---------CCEEEEECCCCC----------HHHHHH----HHHH---HCHHH----CCCEEEEECCHHHHHC---------------------------------------------------------------------------------CCCHHHHHHHH---H-C-CHHHHHC--------C--CEEEEECCCCCC------------------------CCHHHHH--HHHHHHHHHHHHC-CCEEEC-HHHCCC-C----------------CCCC-----CCCCCCCCCCCCCHHHHH---CCHHHHH--HC--------------------------------------------------------------- >P1;d4rw0a1 -------------------------------------------------------------------CEEECCCHHHHCCCCCC--------------CCCHHHHHHHHCC-------CCCE-EECCCCCCCCC----------CCHHH---H------HHHCCCCCCCCCEEEE-CCHHHHHC---------------------------------------------------------------------------------CCCHHHHHHHH---H-HHHHHHHC-----------CCCEEECCCCCCC-CC-----------------------CHHHHHHHHHHHHHHHHHHH-CCEEEC-HHHHHHHHHHC--CCCCCC-----C----------------CCCCCHHHHH--C-CHHHHH--HHC---CC--------------------------------------------------------- >P1;d5tifa1 ------------------------------------------------------------------CEEEEEECHHHHCCCCC--------------HHHCHHHHHHHHHCC------CCEE-EEEECCCCCHH----------HHHHH---HH-----HHHHHH---CCCEEEEECCHHHHH---------------------------------------------------------------------------------CCCCHHHHHHHH---H-HHHHHHHHC----------CCEEEEECCCCCCCCC-------------------------HHHHHHHHHHHHHHHHHH-CCCEECCCHHHHHCC------HHHCCC--------------------CCCCCCCCHHH--HHHHHHHH--HHH---HHHC-C----------------------------------------------------- >P1;d6xpga- --------------------------------------CHHHHHHHHHHHHHHHC---CCC----CCCEEEEECHHHHC------------------------CCHHHHHCCC--------CEEEEECCCCC----------C-CCHH----HCH----HHHC-C---CCCEEEEECCHHHHHC---------------------------------------------------------------------------------CCCHHHHHHHH---C--CHHHHHHHCC------C--CEEEEECCCCCCCCCCC---------------HHHHH--HHHHHHHHHHHHHHHHHHH-CCEEEC-CHHHHCCC----------------CCCC-----CHHHC-CCCCCCCHHHHH--HHHHHHHH--HHC-------------------------------------------------------------- >P1;d7c2aa- -------------------------------------------------------------CCCCCEEEEEEECHHHHCCCCC--------------CCCCHHHHHHHHHHHHC---CCEEE-EEEECCCCCHH----------HHHHH---HH-----HHHHCCCC-CCCEEEEECCHHHHH---------------------------------------------------------------------------------CCCCHHHHHHHH---H-HHHHHHHHC----------CCCEEEECCCCCHHHC-------------------------HHHHHHHHCHHHHHHHHC-CCEEECCCCHHHCCC------HHHCCC--------------------CCCCCCHHHHH--HHHHHHHH--HHH---HHCC-C----------------------------------------------------- PSA >P1;d1es9a- -------------------------833025-25349478877714720660363067--5----80300000010033058--------------------50407810-451-------70100004900----------011002----0044---200460---70600000000105-----------------------------------------------------------------------------------c1716301500---5-30061037406------3--0300000001164653----------------------830620540232057207c39401017-0238035b----------------8320-----36710-543220257003--30064037--105---601-------------------------------------------------------- >P1;d1esda- ----------------------------------------------------------------a51100000011000000250366a6520301105500032036506959---15063231100120202----------1015517057b2540510162069705000000021000113000000730169--------------------------1305481044a3508400500686-----------a0572047109406820---7-40073048404------7051000000100096174048215c3a430004024800520160054005305810874-904002-006a048200005771000102160405-----4a9731200000164006--20064014--203---7117------------------------------------------------------- >P1;d1flca2 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ba7886a7583a98443287bb53310374444471052480000361830000001000492a61750000657006305054400100263307c33727071614000000001003418166a49------------91483027104720561157568110000001009---838106000700540930000408670705078120081036--1060027---5030001110045913305870452234810742848---60444256842606aaa347c---- >P1;d1k7ca- ------------------------------------------------------------------320100000000780287-------------b0200022068207-------0-70-41403522000----------0043--35307----7017607-76-000000000203a62990604000a658--------------------------a6336---2739a----7--71502---------------------000100---1-600760584----------7050000000040------01585816574---------------55018106300850-914103-0030003105725---594047103--------------454221257003--10020001--002---0450-40481054590757---55----------------------------------- >P1;d1yzfa1 -----------------------------------------------------------------53200000020000246-------------768173015004640783a127---030420042600----------053027----1088---30273----9040000000100006------------------------------------------------------------------------------7-3a0839304700---4-400840438--------3----00000002022---a---------------33621339106--5007004400873-a03102-0172037a-------------------8-----168202a40120265005--20072007--204---b307-85aa-------------------------------------------------- >P1;d1z8ha- --------------------------------------------------------------b557030000001004013056--------------9400001005315856---26043-32105660005----------50120---5------83036306935000000000100235c-----------------------------------------------------------------------------9411659502600---4-50045037-----------5030000000163b19-----------------------70462016007404600861-a04115-0056025------904016209835----------------7200447003--2006201817104---2057------------------------------------------------------- >P1;d1zmba1 ------2300000010000056---------------------------9505150521305--b2806--713116--147--------------7010001100001003537--a42000011030802076045a481066016----1066---08--60---8130000000030049-------------------------------------------------------------------------------2---427402620---4-50061018409------1--57100000000610056---------------6807---b0621650152034004629201000-05--------------------------------b0710730220106000--20000003--014---4452-05841961763076---0283925660337324347786177961783361899 >P1;d2apja1 a395052000000000001020542a958754137-----------73084052-49200000383613306010064007c-------------550000000000120186296ba010000000118010650457381052016----0042---0372a0---8030000000020076------------------------------------------------------------------------------59---105403810---4-3008101720a------3--7801000000000a---------------------------7429301920461--93a402013-07--------------------------------a1522b59420317000--60054006--100---5415------------------------------------------------------- >P1;d2hsja1 -------------------------9-------9788646357206710870374187195----70400000010015------------------------02088108793-------40130002302----------053037----207----00011a---8041000000010006---------------------------------------------------------------------------------8164a602810---3-40042037625------a--04000000000037961---------------3b206404084048016206710862-405105-0095014b----------------7720-----47810-640030375007--2008205a--203-------------------------------------------------------------- >P1;d2o14a2 ---------------------------------------------------------------b49300000001001227758-----------71a300100-0363067----930-40-60-05461013----------2035--85319----7117504-68-000-200002025872------907----------------------------------------------------------------------------48302---71240640374----------6040100000030-----610698560405--------------a30218003300851-904202-0053017302705---5a706a10b--------------c43230336005--10030007--005---7390-820--------------------------------------------------- >P1;d3bzwa1 ----------------------------------------------------------a991205624000020100049138b-------------7040013005622-------70-41-00104583203----------1014----005----4048431-b50300000-001002430514812758647--------------------------66349bb692565----7--66433-------------------79202010---0-30043036206--------8200000001301-----30529aa66063286419263----5073005003502b22-a03003-01632750-6------8931-610248-----------7702010246005--4-0520-7--404---8250-75---------------------------------------------------- >P1;d3dc7a1 --------------------------------------------------------------8141620000101000a80609---------------50005201870-------a1632-32204530000644-------6127----216----702a-----70200000100000032041396-------------------------------------------------------a49-------------------86101010------0071037605--------a130000001200-----5-83a---c20328-407474----6042015005507-54-a03101-02871b3026------893087303---------------31010342005--20063027--103---742-------------------------------------------------------- >P1;d3rjta1 ---------------------------------------------------------------065601000002101-c0669203379-----8301b201220162048435a280-60-00004661003----------3027----106----940-72---a130010-000000312555a---------------------------------------7796108---------------------------------38502610---6-7015214650-----------63010010101---------------47683---707----3025005-04700883-903102-0034027307------848285004---------------44040575014--20051006--309---02--------------------------------------------------------- >P1;d4iyja- ----------------------------------8a8968460439404851852674976----940000-0030044047-------------------515610872-----------a0100004700----------041135----0154---00050----6040001000001003------------------------------------------------------------------------------23990517801710---2-4-0730473--------9--0700000010035---0---------------b4268084018307018305810-73-a04002-1265158b----------------8430-----38710-9460305570053183042069--13--------------------------------------------------------------- >P1;d4q9aa- -----------------------------------------------------------a90b0774020000000003b055a1b8232-----70026000320055029636a380-40-10102760004----------2046----105----920162---80300000000002212347-------------------------------------------9228---------------------------------38402730---3-70062046516--------b030000000006---------------80420759600----8035027005500742-a01004-1178067038------838056107---------------30050472015--3-060--a--209----0--------------------------------------------------------- >P1;d4rsha- -----------------------------------------------------------------b7200000010020319-------------64-8500031017439---------170212055621----------064047----2068---20262----8042000000010045---------------------------------------------------------------------------------92628302720---4-3-0730574--------9--070000000117------------------------924b308--6028105710995-a04203-027206-a----------------8571-----5ba041a58110275005---3031006--30--------------------------------------------------------------- >P1;d4rw0a1 -------------------------------------------------------------------40000101104047079--------------660001204842a-------b290-51406490403----------40630---5------8008709b29903000-10020028---------------------------------------------------------------------------------85716301600---1-60063057-----------3200000100035-5b-----------------------73152056007404810874-a15102-11420461368--958006-----9----------------5030334004--3-063027--107---91--------------------------------------------------------- >P1;d5tifa1 ------------------------------------------------------------------51000000110102807--------------992000330485079------6050-22105360105----------60182---05-----910972---805000000021005---------------------------------------------------------------------------------456819601610---2-500530483----------a060000104039a3b-------------------------691075027003600841-a04304001470274------87102b--------------------57620267005--60053007--207---5208-2----------------------------------------------------- >P1;d6xpga- --------------------------------------9a375427722650684---804----77000000020018------------------------0804810839--------40320004602----------0-2058----005----2006-3---6041000000010015---------------------------------------------------------------------------------42709601740---2--0072048306------9--07000000000144485---------------86106--3362066016405510782-914104-01550037----------------8542-----43511-8300305b7015--20361046--407-------------------------------------------------------------- >P1;d7c2aa- -------------------------------------------------------------8a8a450100000330216639--------------a741304623571697a---45040-13105481106----------40492---07-----81055176-604300000021007---------------------------------------------------------------------------------635403703620---1-400410562----------9060200004049939-------------------------691375028005601950-9091462147a34a5------875548--------------------476739a7567--6668766b--888---9888-b----------------------------------------------------- Translating the sequences -------------------------******-**************************--*----***EEE**C****C***--------------------H**HHHH*-***-------**EE**CCCCC----------**HHHH----HH**---******---CCCEEEE*CC****-----------------------------------------------------------------------------------*****HHHHHH---H-**HHHHHH***------*--C*EEEECCCCCC****----------------------*****HHHHHHHHHHHHH***C**EEC-********----------------****-----*****-*CCCCCCHHHHH--HHHHHHHH--HH*---***-------------------------------------------------------- ----------------------------------------------------------------****EEE**C****CCCC********************HHHHHHH*****---******EE**CCCCC**----------HH******HH**************CCCEEEE*CC*HH*****************--------------------------************************-----------***********HHHHHH---H-**HHHHHH***------*****EE**CCCCCC*******************************HHHHHHHHHHHHH**-CC*EEC-**H*************************-----*******CCCCCCHHHHH--HHHHHHHH--HH*---****------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------*************************************************************************HHHHH*********HHHHH************C***EE**CCC**************------------******HHHHHHHHHHH*****CC*EE********---*******************************CCCCCCHHHHH--HHHHHH*---*************************************---*********************---- ------------------------------------------------------------------**EEE**C****CCCC**-------------*****HHH*HHH**-------*-**-EE**CCCCC**----------HHHH--**HH*----H******-*C-CEEEE*CC********************--------------------------*****---*****----*--*****---------------------*HHHHH---H-**HHHHHH*----------*C*EEEECCCCCC------***********---------------*HHHHHHHHHHH**-CC*EEC-**H**********---*********--------------*CCCCCCHHHHH--HHHHHHHH--HH*---****-**************---**----------------------------------- -----------------------------------------------------------------***EEE**C****CCCC-------------*******HHHHHHH********---***EE**CCCCC----------**HHHH----HH**---H****----CCCEEEE*CC******------------------------------------------------------------------------------*-******HHHHHH---H-**HHHH*H*--------*----EEEECCCCCC*---*---------------***********--HHHHHHHHHHH**-CC*EEC-**H*****-------------------*-----*******CCCCCCHHHHH--HHHHHHHH--HH*---****-****-------------------------------------------------- --------------------------------------------------------------******EEE**C****CCCC**--------------****HHHHHHH*****---*****-EE**CCCCC**----------HH***---H------H********CC*EEEE*CC*HH*****-----------------------------------------------------------------------------*******HHHHHH---H-**HHHHH*-----------*C*EE**CCCCCC***-----------------------*****HHHHHHHHHHHHH**-CC***C-**H****------************----------------CCCCCHHHHH--HHHHHHH***HH*---****------------------------------------------------------- ------****************---------------------------*************--*****--**C***--CCC--------------******HHHHHHH******--**********CCCCC************HHHH----HH**---**--**---***EEEE*CC*HH***-------------------------------------------------------------------------------*---****HHHHH---H-**HHHHHH***------*--C***EE**CCCC*****---------------****---****HHHHHHHHHHHHH***C**EEC-**--------------------------------******CCCCCCHHHHH--HHHHHHHH--HH*---****-**************---************************************* ***********************************-----------********-*************EE***C****CCCC-------------*******HHHHHHH**************EE**CCCCC************HHHH----HH**---H*****---***EEEE*CC*HH***------------------------------------------------------------------------------**---***HHHHHH---H-**HHHHHH***------*--C***EE***CCC**---------------------------**HHHHHHHHHH*--***C**EE*-**--------------------------------******CCCCCCHHHHH--HHHHHHHH--HH*---****------------------------------------------------------- -------------------------*-------****************************----***EEE**C****C------------------------**HHHH*****-------**EE**CCCCC----------**HHHH----*H*----H*****---CCCEEEE*CC*HH***---------------------------------------------------------------------------------*****HHHHHH---H-**HHHHHH***------*--C*EEEECCCCCC*****---------------***********HHHHHHHHHHHH***-C**EEC-**H*****----------------****-----*****-*CCCCCCHHHHH--HHHHHHHH--HH*-------------------------------------------------------------- ---------------------------------------------------------------*****EE***C****CCCC**-----------*********-*******----***-**-E*-*CCCCC**----------HHHH--**HH*----H******-*C-CEE-**CC*HH*****------***----------------------------------------------------------------------------HHHHH---H****HHHH**----------*C*EEEECCCCCC-----************--------------****HHHHHHHHH**-CC*EEC-**H**********---*********--------------*CCCCCCHHHHH--HHHHHHHH--HH*---****-***--------------------------------------------------- ----------------------------------------------------------**********EEE**C****CCCC**-------------*****HHHHHHH*-------**-**-EE**CCCCC**----------HHHH----HH*----H******-*CCCEEEE*-C*HH*****************--------------------------*************----*--*****-------------------***HHHHH---H-**HHHHHH***--------*C*EEEECCCCCC-----*********************----*HHHHHHHHHHHHH**-CC*EEC-**H*****-*------****-******-----------*******CHHHHH--*-****-*--*H*---****-**---------------------------------------------------- --------------------------------------------------------------******EEE**C****CCCC**---------------***HHHHHHH*-------*****-EE**CCCCC*****-------****----HH*----H***-----CCCEEEE*CC*HH**********-------------------------------------------------------***-------------------***HHHH*------*HHHHHH***--------*C*EEEE*CCCCC-----*-***---******-******----*HHHHHHHHH**H-**-CC*EE*-**H*******------*********---------------CCCCCCHHHHH--HHHHHHHH--HH*---***-------------------------------------------------------- ---------------------------------------------------------------*****EEE**C****-CCC********-----*******HHHHHHH**********-**-EE**CCCCC**----------HHHH----HH*----H**-**---CCCEEEE-CC*HH********---------------------------------------*******---------------------------------**HHHHHH---H-**HHHHHH**-----------*EEEECCCCCC---------------*****---***----*HHHHHH-**HHHH**-CC*EEC-**H*******------*********---------------CCCCCCHHHHH--HHHHHHHH--H**---**--------------------------------------------------------- ----------------------------------***************************----***EEE-*C********-------------------**HHHHHH*-----------**EE**CCCCC----------**HHHH----HH**---H****----CCCEEEE*CC*HH***------------------------------------------------------------------------------********HHHHHH---H-*-*HHHHH*--------*--C*EEEECCCCCC*---*---------------***********H**HHHHHHHH*-**-CC*EEC-********----------------****-----*****-*CCCCCCHHHHH*******HHH--H*--------------------------------------------------------------- -----------------------------------------------------------*********EEE*******CCCC********-----*******HHHHHHH**********-**-EE**CCCCC**----------HHH*----***----******---CCCEEEE*CC*HH*******-------------------------------------------****---------------------------------**HHHHHH---H-**HHHHHH***--------*C*EEEECCCCCC---------------***********----**HHHHHHHHHHHH**-CC*EEC-**H*******------*********---------------CCCCCCHHHHH--*-***--*--***----*--------------------------------------------------------- -----------------------------------------------------------------***EEE**C****CCCC-------------**-****HHHHHHH**---------***EE**CCCCC----------**HHHH----HH**---H****----CCCEEEE*CC*HH***---------------------------------------------------------------------------------*****HHHHHH---H-*-*HHHHH*--------*--C*EEEECCCCCC------------------------*******--HHHHHHHHHHH**-CC*EEC-**H***-*----------------****-----*******CCCCCCHHHHH---**HHHHH--H*--------------------------------------------------------------- -------------------------------------------------------------------*EEE**C****CCCC**--------------****HHHHHHH**-------****-EE**CCCCC**----------**HH*---H------H********CCCEEEE-CC*HH***---------------------------------------------------------------------------------*****HHHHHH---H-**HHHHH*-----------*C*EEE*CCCCCC-**-----------------------*****HHHHHHHHHHHHH**-CC*EEC-**H********--******-----*----------------CCCCCHHHHH--*-*HHHHH--HH*---**--------------------------------------------------------- ------------------------------------------------------------------**EEE**C****CCCC*--------------*****HHHHHHH***------****-EE**CCCCC**----------HHHH*---HH-----H*****---CCCEEEE*CC*HH**---------------------------------------------------------------------------------******HHHHHH---H-**HHHHHH*----------*C*EEEECCCCCC***-------------------------***HHHHHHHHHHHHH**-CC*EEC***H*****------******--------------------CCCCCC**HHH--HHHHHHHH--HH*---****-*----------------------------------------------------- --------------------------------------*****************---***----***EEE**C****C------------------------**HHHH****--------**EE**CCCCC----------*-**HH----H**----H***-*---CCCEEEE*CC*HH***---------------------------------------------------------------------------------*****HHHHHH---*--*HHHHHH***------*--C*EEEECCCCCC*****---------------*****--****HHHHHHHHHHHHH**-CC*EEC-**H*****----------------****-----*****-*CCCCCCHHHHH--HHHHHHHH--HH*-------------------------------------------------------------- -------------------------------------------------------------*******EEE**C****CCCC*--------------*****HHHHHHH*****---*****-EE**CCCCC**----------HHHH*---HH-----H*******-CCCEEEE*CC*HH**---------------------------------------------------------------------------------******HHHHHH---H-**HHHHHH*----------*C*EEEECCCCC****-------------------------***HHHHH*HHHHHHH**-CC*EEC***H*****------******--------------------CCCCCCHHHHH--HHHHHHHH--HH*---****-*----------------------------------------------------- 52266.tem _________________________________ -------------------------------------------------*****----***-******EEE**C****CCCC**-----------*******HHHHHHH*****---******EE**CCCCC**--------**HHHH----HH**---H******-*CCCEEEE*CC*HH*******--------------------------------------------***----------------------------*******HHHHHH---H-**HHHHHH***------*-*C*EEEECCCCCC*****--***-----**---***********HHHHHHHHHHHHH**-CC*EEC-**H*******----**************-----*******CCCCCCHHHHH--HHHHHHHH--HH*---****-**---------------------------------------------------- Structural block scores 0 48 - 4.7 H 42.0 75.0 75.0 75.0 75.0 75.0 50.9 19.2 50.8 75.0 75.0 75.0 75.0 53.7 75.0 75.0 75.0 75.0 59.4 75.0 49 53 * 4.1 M 4.2 75.0 75.0 75.0 75.0 75.0 4.0 3.8 5.0 75.0 75.0 75.0 75.0 5.4 75.0 75.0 75.0 75.0 5.0 75.0 54 57 - 4.3 M 4.0 75.0 75.0 75.0 75.0 75.0 3.0 22.5 5.0 75.0 75.0 75.0 75.0 4.8 75.0 75.0 75.0 75.0 57.2 75.0 58 60 * 4.0 M 51.7 75.0 75.0 75.0 75.0 75.0 1.3 0.0 5.0 75.0 9.5 75.0 75.0 7.3 31.5 75.0 75.0 75.0 4.0 75.0 62 67 * 2.7 P 39.3 27.9 75.0 50.8 39.2 5.2 28.6 3.5 39.3 17.1 3.2 3.7 15.3 39.7 4.9 40.9 63.2 51.0 39.8 6.3 68 70 E 4.7 H 0.0 0.0 75.0 0.3 0.0 0.0 52.0 2.0 0.0 0.0 0.0 0.0 0.3 0.0 0.7 0.0 0.0 0.0 0.0 0.3 71 72 * 1.4 P 0.0 0.0 75.0 0.0 0.0 0.0 4.0 3.0 0.0 0.0 1.0 0.5 0.0 37.5 0.0 0.0 0.5 0.0 0.0 0.0 74 77 * 1.4 P 1.0 0.5 75.0 0.0 0.5 1.2 20.8 2.5 0.5 0.5 0.2 0.2 1.0 1.8 0.0 0.8 1.5 0.8 0.8 2.0 78 81 C 4.5 M 4.0 0.0 75.0 4.2 3.0 1.0 21.8 4.9 57.5 4.5 4.2 6.1 23.4 3.8 4.9 3.2 2.8 2.5 58.2 4.0 82 83 * 3.4 M 75.0 3.5 75.0 7.5 75.0 5.5 75.0 75.0 75.0 6.5 9.8 4.5 7.5 75.0 7.8 75.0 8.0 41.0 75.0 42.0 84 94 - 4.7 H 75.0 3.8 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 36.3 75.0 36.6 75.0 75.0 75.0 75.0 75.0 95 101 * 2.9 P 75.0 1.7 75.0 23.4 4.6 34.0 11.9 1.4 75.0 3.2 23.0 43.6 3.6 65.0 2.1 14.0 33.9 24.3 75.0 25.1 102 108 H 4.6 H 3.6 2.7 75.0 2.9 2.9 1.3 0.4 0.4 13.4 12.4 2.4 3.3 2.0 4.0 2.1 2.3 2.7 3.3 13.7 3.9 109 113 * 2.6 P 17.0 5.8 75.0 46.4 5.7 5.0 2.2 3.4 5.4 32.6 60.4 60.0 3.8 60.4 4.0 47.4 47.5 33.2 19.0 6.7 114 116 - 4.4 M 75.0 75.0 75.0 75.0 3.3 75.0 52.3 8.8 75.0 53.0 75.0 75.0 5.8 75.0 6.5 75.0 75.0 75.0 75.0 75.0 117 122 * 2.9 P 51.2 2.8 75.0 38.7 38.0 15.0 2.8 1.9 50.7 26.2 27.0 16.2 27.3 51.8 27.0 38.8 28.8 26.8 50.7 14.7 123 124 E 4.7 H 0.5 2.0 75.0 2.5 3.0 2.5 0.5 0.0 2.0 3.0 0.0 2.5 0.0 0.5 0.5 1.5 3.0 2.0 2.5 2.0 125 126 * 1.4 P 0.0 0.5 75.0 2.0 0.0 0.5 0.5 0.0 0.0 37.5 0.5 1.0 0.0 0.0 0.5 1.0 2.0 0.5 0.0 0.5 127 131 C 4.9 H 2.6 1.0 75.0 2.4 2.4 3.4 2.6 2.2 1.4 3.2 4.4 2.4 3.4 2.2 3.0 3.8 4.6 3.0 2.4 3.8 132 133 * 2.8 P 75.0 1.0 75.0 0.0 75.0 2.5 3.5 3.0 75.0 2.0 1.5 0.0 1.5 75.0 2.0 75.0 1.5 2.5 75.0 3.0 134 141 - 4.7 H 75.0 75.0 75.0 75.0 75.0 75.0 4.8 4.1 75.0 75.0 75.0 48.6 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 142 143 * 3.9 M 0.5 75.0 75.0 75.0 2.5 75.0 3.0 2.5 2.5 75.0 75.0 75.0 75.0 2.0 75.0 3.0 75.0 75.0 37.5 75.0 144 147 H 4.5 M 0.8 1.8 75.0 1.8 3.0 2.0 3.2 2.2 3.2 2.5 1.5 4.0 3.0 2.5 3.0 3.8 3.2 3.8 3.8 4.2 148 151 - 4.6 H 75.0 3.2 75.0 39.5 75.0 56.2 75.0 75.0 75.0 40.8 75.0 75.0 75.0 75.0 75.0 75.0 56.2 56.8 75.0 56.8 152 153 H 4.5 M 0.0 6.0 75.0 1.5 0.5 40.0 0.5 0.0 1.0 2.0 0.0 1.5 0.5 0.5 0.5 1.0 40.0 2.5 0.0 3.5 154 155 * 3.1 M 4.0 6.8 75.0 41.0 8.0 75.0 6.0 3.0 41.0 42.0 40.0 40.5 40.5 4.5 40.0 7.0 75.0 75.0 40.0 75.0 156 158 - 4.9 H 75.0 3.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 160 165 * 2.1 P 14.2 1.7 75.0 3.5 27.0 2.5 39.8 16.2 14.6 3.0 3.3 39.6 27.2 25.8 14.3 26.7 4.0 15.7 26.5 3.2 168 170 C 4.5 M 4.3 4.0 75.0 27.0 4.3 2.7 4.0 3.7 4.0 27.7 2.7 3.0 4.8 3.3 3.7 4.0 6.0 4.3 3.3 3.3 171 174 E 4.9 H 0.0 0.0 75.0 0.0 0.0 0.0 0.0 0.0 0.2 19.2 0.0 0.0 0.2 0.2 0.0 0.5 0.8 0.0 0.2 0.8 176 177 C 4.8 H 0.0 0.0 75.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 37.5 0.5 0.0 0.0 0.0 0.0 0.5 0.0 0.0 0.0 179 180 H 4.5 M 0.5 0.5 75.0 1.0 0.0 0.5 1.5 1.0 0.5 1.0 0.5 0.0 0.0 0.5 0.0 0.5 1.0 0.5 0.5 0.5 181 187 * 3.0 P 65.0 0.7 75.0 5.6 43.7 24.6 44.7 44.7 43.7 24.9 2.1 1.4 3.0 43.3 3.0 44.1 44.3 54.3 43.7 54.6 188 231 - 4.7 H 75.0 45.4 20.2 51.0 75.0 75.0 75.0 75.0 75.0 70.2 46.8 70.3 67.4 75.0 73.5 75.0 75.0 75.0 75.0 75.0 232 234 * 4.1 M 75.0 6.2 2.0 4.0 75.0 75.0 75.0 75.0 75.0 75.0 5.3 75.0 3.0 75.0 4.0 75.0 75.0 75.0 75.0 75.0 235 262 - 4.7 H 75.0 31.9 2.4 55.1 72.6 75.0 75.0 72.5 75.0 75.0 55.0 67.8 75.0 72.4 75.0 75.0 75.0 75.0 75.0 75.0 263 269 * 2.8 P 25.4 3.3 2.6 75.0 15.5 5.0 34.3 34.3 25.6 75.0 55.9 55.6 55.1 4.9 55.1 25.3 25.3 15.4 24.6 13.7 270 275 H 4.8 H 1.5 3.3 3.5 0.2 2.3 2.2 2.3 2.7 2.8 15.3 0.8 0.5 2.3 2.8 2.7 2.3 1.7 2.3 3.0 3.0 276 278 - 4.9 H 75.0 75.0 1.7 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 281 282 * 1.5 P 1.5 2.0 2.0 3.0 2.0 2.5 2.5 1.5 2.0 3.0 1.5 37.5 3.5 39.5 3.5 39.0 3.0 2.5 37.5 2.0 283 288 H 4.8 H 2.8 3.7 1.5 4.3 3.2 3.2 2.7 2.8 2.7 3.3 2.7 3.0 3.2 3.5 3.0 3.7 3.5 3.3 3.5 2.7 289 291 * 2.7 P 3.3 2.7 2.0 51.3 52.7 75.0 4.3 4.2 4.3 51.3 2.7 3.7 26.7 51.0 4.0 51.3 75.0 51.0 3.0 50.7 292 297 - 4.9 H 75.0 75.0 5.8 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 303 306 E 4.6 H 0.0 0.0 1.2 0.0 0.0 0.0 0.2 0.2 0.0 0.2 0.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.5 307 312 C 4.8 H 1.3 1.7 0.0 0.7 0.7 1.7 1.0 0.0 0.0 0.5 0.8 0.5 0.5 0.7 1.0 1.5 1.5 2.8 0.2 2.8 313 317 * 3.5 M 18.6 3.6 1.6 75.0 47.5 34.3 2.4 47.1 5.2 75.0 75.0 75.0 75.0 46.0 75.0 75.0 48.3 35.0 5.0 34.2 318 319 - 4.3 M 75.0 6.0 4.5 37.5 75.0 75.0 75.0 75.0 75.0 3.5 1.5 40.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 320 322 * 4.1 M 75.0 2.7 4.3 4.7 75.0 75.0 75.0 75.0 75.0 5.0 5.3 7.2 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 323 327 - 4.3 M 75.0 6.6 34.7 5.0 75.0 75.0 75.0 75.0 75.0 4.6 6.6 47.9 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 328 329 * 4.0 M 75.0 0.0 75.0 5.5 75.0 75.0 75.0 75.0 75.0 2.5 4.5 1.5 5.5 75.0 4.0 75.0 75.0 75.0 75.0 75.0 330 332 - 4.4 M 75.0 1.3 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 5.3 28.3 5.7 75.0 2.0 75.0 75.0 75.0 75.0 75.0 333 343 * 3.1 M 42.6 2.5 36.4 75.0 3.4 42.6 24.1 62.4 3.9 75.0 30.0 30.2 49.3 4.8 30.5 30.7 42.5 56.0 16.8 56.0 344 356 H 4.7 H 2.8 3.0 3.2 8.6 13.7 2.8 2.4 14.4 3.3 3.0 2.8 8.0 8.2 8.5 2.6 14.5 3.3 2.9 3.2 3.5 357 358 * 1.0 P 7.8 5.5 6.0 2.5 5.0 3.5 4.0 6.0 4.0 3.0 2.0 4.5 5.5 5.0 3.0 7.0 5.5 2.5 5.0 2.5 360 361 C 4.8 H 2.0 4.5 4.5 5.0 5.2 5.2 1.0 2.0 2.0 4.5 5.2 5.2 4.5 5.2 5.2 5.2 5.8 5.2 5.0 4.5 363 364 E 4.9 H 0.5 0.0 0.0 0.5 0.5 1.0 0.0 0.5 0.5 1.0 0.0 0.5 0.5 0.0 0.0 1.0 0.5 1.5 0.5 2.5 367 368 * 1.0 P 1.0 0.0 0.0 0.0 0.5 0.0 2.5 3.5 0.0 0.0 0.5 1.0 0.0 1.5 1.0 1.0 1.0 0.5 0.5 2.5 370 376 * 2.3 P 25.4 3.5 34.6 1.3 24.6 34.0 75.0 75.0 24.5 2.3 14.0 4.4 3.3 25.8 4.6 34.8 3.1 24.3 23.6 26.1 377 380 - 4.5 M 75.0 3.0 3.0 22.2 75.0 58.5 75.0 75.0 75.0 21.8 75.0 75.0 75.0 75.0 75.0 75.0 41.8 75.0 75.0 75.0 381 394 * 3.5 M 54.5 1.9 2.4 29.1 70.2 18.8 75.0 75.0 54.7 30.5 24.4 29.7 29.6 54.6 29.5 55.1 44.9 45.0 54.9 45.5 395 399 - 4.9 H 75.0 75.0 2.4 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 400 406 * 3.5 M 13.9 5.2 3.6 64.9 4.2 75.0 14.5 15.3 14.4 66.1 55.6 75.0 75.0 14.7 75.0 6.1 75.0 75.0 13.9 75.0 407 412 C 4.9 H 2.2 0.2 3.0 2.7 1.5 14.7 1.3 3.8 1.7 2.5 0.8 1.3 2.8 3.0 2.0 2.8 14.3 3.7 1.8 6.0 413 417 H 5.0 H 3.0 3.2 3.6 3.0 3.2 2.8 1.2 1.6 3.8 2.8 3.0 2.2 3.4 3.4 3.0 3.4 2.2 3.6 4.9 7.1 418 419 - 4.9 H 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 2.0 75.0 75.0 75.0 75.0 75.0 75.0 420 427 H 4.5 M 2.9 2.1 11.4 0.5 2.2 2.4 0.6 2.6 3.4 1.4 21.0 2.5 1.8 4.0 30.6 11.0 12.0 2.6 2.8 7.1 428 429 - 4.9 H 75.0 75.0 75.0 75.0 75.0 4.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 430 431 H 4.4 M 0.5 1.0 2.5 0.0 1.0 0.5 0.5 0.5 1.0 0.0 2.0 0.5 1.5 2.0 1.0 1.5 0.5 1.0 2.0 8.0 433 435 - 4.9 H 75.0 75.0 0.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 436 439 * 2.6 P 20.5 4.0 0.8 2.2 5.4 3.5 3.8 3.8 75.0 4.8 3.8 22.0 38.0 75.0 56.2 75.0 40.0 3.8 75.0 8.2 441 442 * 3.9 M 75.0 75.0 4.5 2.0 6.5 75.0 2.5 75.0 75.0 5.0 6.0 75.0 75.0 75.0 75.0 75.0 75.0 38.5 75.0 43.2 443 494 - 4.7 H 75.0 75.0 14.2 56.1 72.5 75.0 9.0 75.0 75.0 73.6 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 >>>>>>