Reading input alignment file to find conserved blocks of secondary structure The input structure based alignment from Comparer _____________________________________________ >P1;d1ezwa- --CCCEEEEEECCC-C----------------C--HHHHHHHHHHHHHC---CCCEEEECCCC----------------------CCCCHHHHHHHHHHCCCCCEEEECCCCC-CCCCHHHHHHHHHHHHHHCCCCCCEEECCCC-HHHHHHHCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHC-CC---------------------CCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECC-CHHHHHHHHHHCCEEEEE--CCCHHHHH-HHHHHHHHHHHHCCCCHHHC-EEEEECCEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHCC--------------------------CCCCCCCHHHHHCCCCCHH--HHHHHCCHHHHHH-HCEEE-CHHHHHHHHHHHHHC-CCCEEEECCCCCC----CHHHHHHHHHHHCHHHCC------------------------------------ >P1;d1luca- ----CEEEEEECCCCCC---------CCCHHHH--HHHHHHHHHHCHHH---CCCEEEECCCCCC--C--------------CC-CCCCHHHHHHHHHHHCCCCEEEEEEEEH-HHCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHHHHHHC----------------------EEEEECCCCEEEEEECCCCCCCCCCCCEEECCC-CHHHHHHHHHCCCCCEECC-CCCHHHHH-HHHHHHHHHHHHCCCCHHHCC-CEEEEECEECCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------HCC-CCC-CHHH--CCEE-CHHHHHHHHHHHHHHHCCCEEEEECHHHC-CHHHHHHHHHHHHHHCHHHCCCCC--------------------------------- >P1;d1lucb- ----CEEEEEECCCCCC---------CCCHHHH--HHHHHHHHHHHHC----CCCEEEECCCCCC--C--------------CC-CCCCHHHHHHHHHHHCCCCEEEEEEEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCC-----------------CCHHHHHHHHHHHHHHHHHHHHHC----------------------EECCCCCCCCCCCEECCCCCCCCCCCCEEEECC-CHHHHHHHHHHCCCEEECC-CCCHHHHH-HHHHHHHHHHHHCCCCCCCCC-CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC-----------------------------------------------------CHHHHHHHHHHH--CEEE-CHHHHHHHHHHHHHHHCCCEEEEECCCCC-CHHHHHHHHHHHHHC-CC--------------------------------------- >P1;d1m41a- ---CCEEEEECCCCCEECCCCCC--CCEE---CCCHHHHHHHHHHHHHH---CCCEEEECCCC----------------------CCCCHHHHHHCCCCCCCCCEEEE-EECC-CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHC---------------CCCCHHHHHHHHHHHHHHHHHHCCCC----------------------CEEEECCCCEEEEECCCCCCCCCCCCCEEECCC-CHHHHHHHHHHCCEEEEE--CCCHHHHH-HHHHHHHHHHHCCCCC---C-EEEEECEEEEECCHHHHHHHHHHHHC----------------------------------------------CCCCCCCC------EE-C-HHHCCCCCCCC--EEEEEHHHHHHHHHHHHHH-HEEEEECCCCCCC---HHHHHHHHCCHHHCCCCCCC----------------------------CCCCCCC >P1;d1nfpa- -CCCCCEEEEEECCCCCCCCC-----------HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC---------------------------------------------------------------------------------------CCCCCCCEEEEC--------------------------------------------------------------------------CEEEEECC-CHHHHHHHHHCCCCEEECC-CCCHHHHH-HHHHHHHHHHHHHCCCCCC-CCEEEEEEEEECCCHHHHHHHHHHHCCHHHHHCCC-----------------------------------------------------------CCHHHHHH--CCEEECHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC------------------------------- >P1;d1rhca- --CCCEEEEECCCCCC----------------C--HHHHHHHHHHHHHH---CCCEEEECCCCCCCCC--------------CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHHHC--------------CCCCHHHHHHHHHHHHHHHHHHHHCCC---------------------CEEEECCCCEEEEECCCCCCC--CCCCEEEECC-CHHHHHHHHHHCCEEEEE--CCCHHHHHHCHHHHHHHHHHHCCCCHHHC-CEEEEEEEEECCCHHHHHHHHHHHHHHHC-------HHHHC--------------------------CCCCCHHHHHHHHC-----------CCCHHHHHH-HCEEECCHHHHHHHHHHHHHH-CCCEEEEEEC-CC----CHHHHHHCHH-HHHHHHCC----------------------------------- >P1;d3b9oa- --CCCEEEEEEECCCCCCCCCHHHCCCCCHHHHHCHHHHHHHHHHHHHC---CCCEEEEECCCCCCCCHHHCCHHHHHCCC--CCCCCCCHHHHHHHHHCCCCCEEEE-EEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEECHHHCCCCCEECCCCEECCC-CCCCCCCCCCCEEEEECC-CHHHHHHHHHHCCEEEEC--CCCHHHHH-HHHHHHC-CCHHHCCCHH-HCEEEEEEEEEECCCHHHHHHHC-CHHHHCC--HHHHHHHHHHHHC-CCHHHCCCCCCCCCC------------CHHHHHHHHC-----------CCCCC---CCEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHCC--- >P1;d3raoa1 -----CEEEECCCCC-CCCCCCC--CCC----CCCHHHHHHHHHHHHHC---CCCEEECCCCCCCCCCCC-------------CCCCCCHHHHHHHHHHHCCCCC-EE-EECH-HHCCHHHHHC-CHHHHHHCCCCEEEEECCCCCHHHHHHHCC--------------CCCCCC-CHHHHHHHHHHHHHHHHCC----------------------CEEEECCCCEEEEECCCCCCCCCCCCCEEECCC-C-CHHHHHHHHCCEEC-C--CCCHHHHH-HHHHC-CHHHHCCCCC---CCCCEEEEECEECCCHHHHHHHHHHHCC----------------------------------------------CCCCHHHHH-----HC-HHHHHHHCHHHCCCCCCEECHHHHHHHHHHHHHC-CCCEEEEECCCCC---CC-CHHHHHC-CHHHHHHHC----------------------------------C >P1;d5dqpa- --CCCEEEEECC-CCC-CCCCHHHCCCCCHHHHHCHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCC---------CCCCCCC--CCHHHHHHHHHHHCCCCEEEE-EEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCC--------------CCCCHHHHHHHHHHHHHHHHHHHC-CEECCCCCCCCCCCCCCE---ECCCCEECCCCEECCC-CCCCCCCCCCCCEEEECC-CHHHHHHHHHHCCEEEEE--CCCHHHHH-HHHHHHHHHHHHCCCCCC-CCEEEEEECEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC--CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHCC-------CEEECHHHHHHHHHHHHHCCCCCEEEECCCCCC---HHHHHHHHHCHHHHHHCCCCCCCCCCCCHHHHCCCC--CCCCC------------ >P1;d5lxea- --CCCEEEEEECCCCC----------------C--HHHHHHHHHHHHHC---CCCEEEECCCCCCCCC--------------CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHCCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCC----------------------CEEEECCCCEEEEECCCCCCC--CCCCEEEECC-CHHHHHHHHHHCCEEEEE-CCCCCHHHHHCHHHHHHHHHHHCCCCHHHC-EEEEEEEEEECCCHHHHHHHHHHHHHHHC-------C------------------------------------HHHHHHHH-----------HCCHHHHCC-CCEEECCHHHHHHHHHHHHHC-CCCEEEEECC-CC----CHHHHHHHHHHHCHHHHHCC---------------------------------- >P1;d5xkca- C--CCEEEEECCCCCCCCCCCHHHCCCCCCC-CCCHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCHHHCCHHHHHHCCC-CCCCCCHHHHHHHHHCCCCCCEEEE-EEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCEEEECCCCEEECHHHCCCCCEECCCCEECCC-CCCCCCCCCCCEEEECCC-CHHHHHHHHHHCCEEEEC--CCCHHHHH-HHHHHHHHHHHHCCCCHH-HCEEEEEEEEEECCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHC-CCHHHCCCCCCHHHHHHHHCHHHCC-HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCCCEEEECCCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCC--CCCCC------------ >P1;d6aska- CCCCCEEEEECC-CCC-CCCCHHHCCCCCCCHHHCHHHHHHHHHHHHHC---CCCEEEECCCCCCC-------C----CCCHHHHCCCCHHHHHHHHHCCCCCCEEEE-EEEC-CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCHHHCCCCCEECCCCEECCC-CCCCCCCCCCCEEEECCC-CHHHHHHHHHHCCEEEEC--CCCHHHHH-HHHHHHHHHHHHCCCCHH-HCEEEEEECCEECCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC-CCCCCCC-HHHHHHHHHHHHCC-CCHHHHHHHHHC---CCCCCEECHHHHHHHHHHHHHCCCCCEEEECCCCC----CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCC--CCC-------------- >P1;d6lr1a- CCCCCEEEEEEECCCCCCCCCHHHCCCCCHHHCCCHHHHHHHHHHHHHC---CCCEEEEECCCCCCCCCCCCCHHHHHCCC--CCCCCCHHHHHHHHHHHCCCCEEEE-EEEC-CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEECHHHCCCCCEECCCCEECCC-CCCCCCCCCCCEEEECCC-CHHHHHHHHHHCCEEEEC--CCCHHHHH-HHHHHHHHHHHHHCCCCC-CCEEEEEEEEEECCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHC-CCCCCCCCCCCHHHCC---------CHHHHHHHHHHHHHCCCCCCCHHHHHHH---CCEEEEECHHHHHHHHHHHHH-CCCCEEEECCCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHCCCCC >P1;d7bipa- ----CEEEEECCCCCCC--------CCCCHHHH--HHHHHHHHHHHHHH---CCCEEEECCCCCC--C--------------CCCCCCCHHHHHHHHHHHCCCCEEEEEEECH-HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHC-----------------CCCCCHHHHHHHHHHHHHHHHHCC----------------------CEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEECCCCCCHHHHH-HHHHHHHHHHHHCCCCCCHHH-EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------C--CHHHHHHHCCCCEEE-CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHC------------------------------------ PSA >P1;d1ezwa- --3a3100010406-5----------------8--38400400410051---80610001035----------------------4067029003300650880300002000-0122026004100400730801000000214-780056392526035022087399706---21300300250013106-00---------------------50626260030c638085504243902000107-578103000310500008--20024006-6015403400662a162850-1000000000085395036302420043038059710920a--------------------------0469307602710b7654a--7039303a70150-00000-319301730450161-6020000051001----544500520085014619------------------------------------ >P1;d1luca- ----0400010200206---------7267960--481144005304c0---6051000300141--4--------------00-1018018203710a21970200000000-0064018004400500360711020002206070007439-----------------162950650041006003400366----------------------5040848227186460838043a0003000403-3740041003201100052-22529505-620630481078494727713-000001000165286027406910a3147033703-----------------------------------------------------725-809-0273--0000-20840272027004203031000300007-63a60270062036301460864b--------------------------------- >P1;d1lucb- ----252000000023b---------9254950--4750250083008----2040000100253--4--------------00-1026008202700b20860500001010-004401600440050035171201000010435610663b-----------------264a22270033006003300460----------------------4050929215285430734045a6009100000-5760041003511200010-01219306-501920771067592818914-1100000003a7085037303800460063326b5-----------------------------------------------------716910840172--0000-35940271274028109031000002009-669311710551267-28--------------------------------------- >P1;d1m41a- ---4130000000260053033a--6632---90759103600400161---10100001265----------------------90660181045016306202000-0020-1245024004600400470210000103028869413546---------------18376741040041003001300375----------------------506265811517614083403265002000347-3b6004000400300106--03139505-7206604830683a29---0-40000000001855950361075014----------------------------------------------32544161------00-3-00444942071--0000206200620550281-6030000000002---50044006201530813819----------------------------539759a >P1;d1nfpa- -65323100000618600717-----------595277125304301862080041205041068426c---------------------------------------------------------------------------------------897766353509--------------------------------------------------------------------------a6400103-4482037006712100010-10228504-7005503600874b2917b-110000001012a649504720450040196292a-----------------------------------------------------------37484017--0000042870283157007605330000000000663850361027107504851683a19------------------------------- >P1;d1rhca- --35030000000011----------------7--47501600340170---7020000000531014--------------6b0412501900560083089020000200001017025005200400551661000000201-000001328--------------702746502610210060022005297---------------------516171821408832084209--7402000103-846102200240410001--0121850674014303300663a361880-21000000001664960073021000002-------73015--------------------------74145165018404-----------818694046-100002627402710430280-6010000000-01----6263004207-70064044----------------------------------- >P1;d3b9oa- --94010000000012110000540680317216567001600620270---20000002113030310674660057210--0251650070063009207100000-0110-004503800650051035080000000202606100873919-------------76096720050021003000100010156900353aa7b47227931450706572170604-051300300000000251-472012000200000002--03529305-7106203-20862a0627-3010000000000776a504932-5058101--3400001200447-50036267a561994------------3046138514-----------50622---512001031740043037026508030000000003---600320062004102726101760865100000187855203a30100733b--- >P1;d3raoa1 -----6300100002-200201b--917----53637102500320072---a05001020120030195-------------a270150180045006307602-00-0000-0027028005-00800340a1100010308036500744b0--------------76287b-1151031004004200849----------------------41518392152773508530329a102000245-6-30250014203011-3--00438403-82085-5741893ba8---0600000000001953760071015008----------------------------------------------785347704-----82-4a31360024300203000215200520150483-3050000000303---70-6302650-540651477----------------------------------a >P1;d5dqpa- --4201000200-000-23570246263857105636100600400350---20000001143177758---------9402210--360180055009505300000-0100-113804500550140028090000000300537600764a5--------------915848521530110040005005-01422494a7a1975726---3841827472171703-061110521000000357-5a3045000300000016--01023525-6207613640573a037b-001000201010166784176227613892673a43054107504--06298182656077910813a3b27796063003003328-10056022014-------000011670063026007440000000100200---320440044004200759003660749000500902--78038------------ >P1;d5lxea- --39531000000000----------------3--77500400230162---6030000103545108--------------5a04006017004400740850200002010001270270073005004506c1000001119-3810622a29------------ba11a5941031031005002500567----------------------61716392151753116912b--a004000309-545003000430400003-035b3710465014005500863a274670-00001010000345740353031001423-------8------------------------------------78616404-----------816283007-601202617700640540171-7000000000-17----70630050046100340692---------------------------------- >P1;d5xkca- 6--5010001020000110001440960644-16667003400500250---200000022621313506966800583302-2142360180033007208300000-0110-103603500520040047070000000307068211763a3a-------------973846410420210040035001-01247033639b7967128941650707482141603-071300500000000362-490026000410100003--02739504-7127401730583a2636-3010000000000973640563294026103--330000000250a-2501617391517702752889802-820460076109964130330033000110201110021840045006106450010000000010---500320064003301759101770b23000500909--42929------------ >P1;d6aska- 2b5401000201-000-44611440750557003346202710520270---20000002153346-------a----922204491250170035007308200000-0100-004604500550050045050000000303176000553b49-------------702846411610210060024004-0146503465a96957439821552627372151702-072000800000000408-584034000500100115--17339604-8018401710572a2737-5000004070001668960473024005212--2860185037107937087263767018009-8b85b82-9306602630774a-120330001213---72250103175007201600536000000030402----90062004400420195910377154510050030b--443-------------- >P1;d6lr1a- 81a2000002001010000001350750305405646003300510260---3000000204311230ab38473047110--1440450180045016308400000-0010-112503500540050037090000000303636300553a4a-------------75465b6317103100400010000012a904344aa78471278411607065a3070604-05132030100000040a-594036000500000012--01229505-8247402730782a0467-0010000000000667740652165037303--250001000242a-3606a07373102418---------3b30542077038109785020420111---200202011630064047027-04050000000102---5003300530030016370017905950002000063742029300005227424 >P1;d7bipa- ----0400000200007--------a3175b50--49201300200162---4010000000152--5--------------1001044018003500750960200000000-0033037002300600350701000000205046009539-----------------275860722063203003400166----------------------80417161371054328430529710300120236384035006551000030362547403-7005504810883a2907330-00030400007718305630161181287038805-----------------------------------------------------a--7a2573275120000-20a6047004505a2073000001011051528200300510074015518------------------------------------ Translating the sequences --*CCEEEEE*CCC-C----------------*--HHHHHHHHHHHHH*---CCCEEEECCCC----------------------CCCCHHHHHHHHHH*CCCCEEEE****C-CCCCHHHHHHHHHHHHHHCCCC**EEE*CCC-HHHHHH*C***************CCCC---HHHHHHHHHHHHHHHH*-C*---------------------C****CCCC******CCCCCCC***C*EEE*CC-CHHHHHHHHHHCCEEEE*--CCCHHHHH-HHHHHHHHHHHHCCCC****-*EEEE**EEECCCHHHHHHHHHHHH****************--------------------------*******************--*******H*****-*C*EE-CHHHHHHHHHHHHH*-CCCEEEE*CCCCC----*HHHHHHHHHHH*HH**C------------------------------------ ----CEEEEE*CCCCC*---------C******--HHHHHHHHHH*HH*---CCCEEEECCCCCC--C--------------*C-CCCCHHHHHHHHHH*CCCCEEEE*EE**-**CCHHHHHHHHHHHHHH*CCCEEEEE*CCCCHHHHHH*C-----------------CCHHHHHHHHHHHHHHHHHHH**C----------------------***EECCCCEE****CCCCCCCCCCC*EEE*CC-CHHHHHHHHH*CC**EE**-CCCHHHHH-HHHHHHHHHHHHCCCC*****-*EEEEE*EECCCHHHHHHHHHHHH***********-----------------------------------------------------***-***-****--C*EE-CHHHHHHHHHHHHH**CCCEEEE*C***C-***HHHHHHHHHHHH*HH**CC**--------------------------------- ----CEEEEE*CCCCC*---------C******--HHHHHHHHHHHH*----CCCEEEECCCCCC--C--------------*C-CCCCHHHHHHHHHH*CCCCEEEE*EE*C-CCCCHHHHHHHHHHHHHHCCCCEEEEE*CCCCHHHHHH*C-----------------CCHHHHHHHHHHHHHHHHHHH**C----------------------*****CCCC******CCCCCCCCCCC*EEE*CC-CHHHHHHHHHHCC*EEE**-CCCHHHHH-HHHHHHHHHHHHCCCC*****-*EEEEEEEECCCHHHHHHHHHHHH***********-----------------------------------------------------******H*****--C*EE-CHHHHHHHHHHHHH**CCCEEEE*CCCCC-***HHHHHHHHHHH*-**--------------------------------------- ---CCEEEEE*CCCC********--*C**---***HHHHHHHHHHHHH*---CCCEEEECCCC----------------------CCCCHHHHHH*****CCCCEEEE-EE*C-CCCC**HHHHHHHHHHHHCCCCEEEEE*CCCC***HHH*C---------------CCCCHHHHHHHHHHHHHHHHHH***C----------------------C**EECCCCEE****CCCCCCCCCCC*EEE*CC-CHHHHHHHHHHCCEEEE*--CCCHHHHH-HHHHHHHHHHH*CCCC---*-*EEEE*EEEE*CCHHHHHHHHHHHH*----------------------------------------------********------**-*-***********--*EE**HHHHHHHHHHHHH*-***EEE**CCCCC---*HHHHHHH**HHH*****CC----------------------------******* -**CC*EEEE**CCCC*****-----------***HHHHHHHHHHHHH****C**EEEE*CCCCC**C*---------------------------------------------------------------------------------------************--------------------------------------------------------------------------C*EEE*CC-CHHHHHHHHH*CC*EEE**-CCCHHHHH-HHHHHHHHHHHH*CCC***-**EEEEEEEEECCCHHHHHHHHHHH**********-----------------------------------------------------------**H*****--C*EE*CHHHHHHHHHHHHH**CCCEEEE**CCCC****HHHHHHHHHHHH*HH********------------------------------- --*CCEEEEE*CCCCC----------------*--HHHHHHHHHHHHH*---CCCEEEECCCCCC**C--------------*C*CCCCHHHHHHHHHH*CCCCEEEE****C*CCCCHHHHHHHHHHHHHHCCCCEEEEE*CCC-HHHHHH***--------------CCCCHHHHHHHHHHHHHHHHHHH**C*---------------------C**EECCCCEE****CCCCCC--CCC*EEE*CC-CHHHHHHHHHHCCEEEE*--CCCHHHHH**HHHHHHHHHHHCCCC****-*EEEEEEEEECCCHHHHHHHHHHHH****-------*****--------------------------**************-----------***H*****-*C*EE*CHHHHHHHHHHHHH*-CCCEEEE**C-CC----*HHHHHH*HH-H*HH**CC----------------------------------- --*CCEEEEE**CCCC**********C********HHHHHHHHHHHHH*---CCCEEEE*CCCCC**C*************--C*CCCC*HHHHHHHHH*CCCCEEEE-EE*C-CCCCHHHHHHHHHHHHHHCCCCEEEEE*CCCCHHHHHH*C**-------------CCCCHHHHHHHHHHHHHHHHHHH**C**********************C**EECCCCEE***-CCCCCCCCCCC*EEE*CC-CHHHHHHHHHHCCEEEE*--CCCHHHHH-HHHHHH*-**HH*CCC**-***EEEEEEEEECCCHHHHHHH*-*HH****--*************-***************------------**********-----------*****---****EE*CHHHHHHHHHHHHH**CCCEEEE*CCCCC---*HHHHHHHHHHHH*HH**CC********************************--- -----*EEEE*CCCC-*******--*C*----***HHHHHHHHHHHHH*---CCCEEE*CCCCCC**C**-------------C*CCCCHHHHHHHHHH*CCCC*-EE-EE**-**CCHHHHH*-*HHHHHHCCCCEEEEE*CCCCHHHHHH*C*--------------CCCC**-*HHHHHHHHHHHHHHH**C----------------------C**EECCCCEE****CCCCCCCCCCC*EEE*CC-C-*HHHHHHHHCCEE*-*--CCCHHHHH-HHHH*-*HHHH*CCCC---****EEEEE*EECCCHHHHHHHHHHH**----------------------------------------------*********-----**-******H*******C**E*CHHHHHHHHHHHHH*-CCCEEEE*CCCCC---**-*HHHHH*-*H*HH***C----------------------------------* --*CCEEEEE*C-CCC-*********C********HHHHHHHHHHHHH*---CCCEEEECCCCCC**C*---------*****C*--CCHHHHHHHHHH*CCCCEEEE-EE*C-CCCCHHHHHHHHHHHHHHCCCCEEEEE*CCCCHHHHHH*C*--------------CCCCHHHHHHHHHHHHHHHHHHH*-C*****************---**C**EECCCCEE***-CCCCCCCCCCC*EEE*CC-CHHHHHHHHHHCCEEEE*--CCCHHHHH-HHHHHHHHHHHHCCCC**-***EEEEE*EEECCCHHHHHHHHHHHH******************--****************************************-***********-------*EE*CHHHHHHHHHHHHH**CCCEEEE*CCCCC---*HHHHHHHH*HHH*HH**CC****************--*****------------ --*CCEEEEE*CCCCC----------------*--HHHHHHHHHHHHH*---CCCEEEECCCCCC**C--------------*C*CCCCHHHHHHHHHH*CCCCEEEE****C*CCCCHHHHHHHHHHHHHHCCCCEEEEE*CCC-HHHHHH*C**------------*CCCCHHHHHHHHHHHHHHHHHHH**C----------------------C**EECCCCEE****CCCCCC--CCC*EEE*CC-CHHHHHHHHHHCCEEEE*-*CCC*HHHH**HHHHHHHHHHHCCCC****-*EEEEEEEEECCCHHHHHHHHHHHH****-------*------------------------------------********-----------***H*****-*C*EE*CHHHHHHHHHHHHH*-CCCEEEE*CC-CC----*HHHHHHHHHHH*HH***C*---------------------------------- *--CCEEEEE*CCCCC**********C****-***HHHHHHHHHHHHH*---CCCEEEECCCCCC**C**************-C*CCCCHHHHHHHHH**CCCCEEEE-EE*C-CCCCHHHHHHHHHHHHHHCCCCEEEEE*CCCCHHHHHH*C**-------------CCCCHHHHHHHHHHHHHHHHHHH*-C**********************C**EECCCCEE***-CCCCCCCCCCC*EEE*CC-CHHHHHHHHHHCCEEEE*--CCCHHHHH-HHHHHHHHHHHHCCCC**-***EEEEEEEEECCCHHHHHHHHHHHH****--*************-*************************-************************H*******C*EE*CHHHHHHHHHHHHH**CCCEEEE*CCCCC---*HHHHHHHHHHHH*HH**CC****************--*****------------ ***CCEEEEE*C-CCC-*********C********HHHHHHHHHHHHH*---CCCEEEECCCCCC*-------*----*******CCCCHHHHHHHHH**CCCCEEEE-EE*C-CCCCHHHHHHHHHHHHHHCCCCEEEEE*CCCCHHHHHH*C**-------------CCCCHHHHHHHHHHHHHHHHHHH*-C**********************C**EECCCCEE***-CCCCCCCCCCC*EEE*CC-CHHHHHHHHHHCCEEEE*--CCCHHHHH-HHHHHHHHHHHHCCCC**-***EEEEE**EECCCHHHHHHHHHHHH****--*******************************-*******-**************-*********H**---**C**E*CHHHHHHHHHHHHH**CCCEEEE*CCCC----*HHHHHHHHHHHH*HH**CC****************--***-------------- ***CCEEEEE**CCCC**********C********HHHHHHHHHHHHH*---CCCEEEE*CCCCC**C*************--C*CCCCHHHHHHHHHH*CCCCEEEE-EE*C-CCCCHHHHHHHHHHHHHH*CCCEEEEE*CCCCHHHHHH*C**-------------CCCCHHHHHHHHHHHHHHHHHHH**C**********************C**EECCCCEE***-CCCCCCCCCCC*EEE*CC-CHHHHHHHHHHCCEEEE*--CCCHHHHH-HHHHHHHHHHHH*CCC**-***EEEEEEEEECCCHHHHHHHHHHHH****--*************-****************---------*************************H**---****EE*CHHHHHHHHHHHHH-*CCCEEEE*CCCCC---*HHHHHHHHHHHH*HH**CC*********************************** ----CEEEEE*CCCCC*--------*C******--HHHHHHHHHHHHH*---CCCEEEECCCCCC--C--------------*C*CCCCHHHHHHHHHH*CCCCEEEE*EE**-**CCHHHHHHHHHHHHHHCCCCEEEEE*CCCCHHHHHH*C-----------------CC***HHHHHHHHHHHHHHHH**C----------------------C**EECCCCEE****CCCCCCCCCCC*EEE*CC*CHHHHHHHHH*CCEEEE***CCCHHHHH-HHHHHHHHHHHHCCCC*****-EEEEEEEEECCCHHHHHHHHHHHH***********-----------------------------------------------------*--***H*******C*EE-CHHHHHHHHHHHHH**CCCEEEE*CCCCC****HHHHHHHHHHHH*HH**C------------------------------------ 51679.tem _________________________________ --*CCEEEEE*CCCCC**********C********HHHHHHHHHHHHH*---CCCEEEECCCCCC**C*---------***-*C*CCCCHHHHHHHHHH*CCCCEEEE*EE*C-CCCCHHHHHHHHHHHHHHCCCCEEEEE*CCCCHHHHHH*C**-------------CCCCHHHHHHHHHHHHHHHHHHH**C*****************---**C**EECCCCEE****CCCCCCCCCCC*EEE*CC-CHHHHHHHHHHCCEEEE*--CCCHHHHH-HHHHHHHHHHHHCCCC******EEEEEEEEECCCHHHHHHHHHHHH******************--***************-------***-**************-*********H*******C*EE*CHHHHHHHHHHHHH**CCCEEEE*CCCCC---*HHHHHHHHHHHH*HH**CC****************--***-------------- Structural block scores 0 1 - 4.4 M 75.0 75.0 75.0 75.0 40.5 75.0 75.0 75.0 75.0 75.0 40.5 6.8 4.5 75.0 3 4 C 4.7 H 6.8 37.5 38.5 2.5 2.5 2.5 2.0 75.0 1.0 7.0 2.5 2.0 1.0 37.5 5 9 E 4.9 H 0.4 1.0 1.4 0.6 0.8 0.6 0.2 2.0 0.6 0.8 0.4 0.6 0.4 0.8 11 15 C 4.7 H 18.0 0.8 1.0 1.6 4.2 0.4 0.6 15.4 15.0 0.0 0.4 15.2 0.4 0.4 16 25 * 3.3 M 75.0 68.1 68.7 18.1 39.0 75.0 1.7 17.6 10.6 75.0 2.0 10.6 1.6 61.8 27 34 * 2.8 P 66.6 22.5 21.9 30.8 49.2 66.5 3.1 40.1 4.4 66.0 12.8 2.9 2.9 22.4 35 47 H 5.0 H 2.2 3.6 3.2 2.7 3.3 2.9 2.8 2.3 2.2 2.7 2.5 2.9 2.3 2.2 49 51 - 4.8 H 75.0 75.0 75.0 75.0 3.3 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 52 54 C 4.9 H 4.7 3.7 2.0 0.7 1.3 3.0 0.7 5.2 0.7 3.0 0.7 0.7 1.0 1.7 55 58 E 5.0 H 0.2 0.2 0.0 0.0 2.0 0.0 0.0 0.2 0.0 0.0 0.0 0.0 0.0 0.0 59 64 C 4.8 H 26.5 1.5 1.8 27.3 3.2 1.5 1.7 0.8 2.8 3.0 2.7 3.0 1.8 1.3 65 66 * 3.0 P 75.0 75.0 75.0 75.0 3.0 0.5 1.5 1.5 7.0 0.5 2.0 40.5 2.5 75.0 69 77 - 4.4 M 75.0 75.0 75.0 75.0 75.0 75.0 4.6 67.2 75.0 75.0 5.3 67.8 5.3 75.0 78 80 * 3.9 M 75.0 75.0 75.0 75.0 75.0 75.0 1.0 75.0 4.3 75.0 2.0 4.3 0.7 75.0 85 88 C 4.8 H 4.2 2.5 2.2 5.2 75.0 3.0 4.2 3.2 39.8 2.5 3.8 4.2 3.2 2.2 89 98 H 4.7 H 2.3 3.2 3.0 2.6 75.0 2.9 2.5 2.4 2.8 2.3 2.2 2.3 2.5 2.4 100 103 C 4.8 H 4.0 4.2 3.5 2.0 75.0 4.2 2.0 3.2 2.0 3.2 2.8 2.5 3.0 3.8 104 107 E 4.7 H 0.8 0.5 1.2 0.5 75.0 0.5 0.0 19.2 0.0 0.5 0.0 0.0 0.0 0.5 109 110 E 4.3 M 1.0 0.0 0.5 0.0 75.0 1.0 0.5 0.0 0.5 1.0 0.5 0.5 0.0 0.0 114 117 C 4.5 M 1.2 2.5 2.0 3.0 75.0 2.2 2.2 2.2 3.2 2.5 2.5 2.5 2.2 1.5 118 131 H 4.7 H 1.9 2.2 2.0 2.2 75.0 2.0 2.6 7.5 2.4 2.4 2.1 2.4 2.3 2.1 132 135 C 4.7 H 2.2 2.2 2.8 0.8 75.0 3.5 2.0 3.1 2.2 4.9 1.8 1.2 2.2 2.0 136 140 E 4.7 H 0.0 0.4 0.2 0.2 75.0 0.0 0.0 0.2 0.0 0.0 0.0 0.0 0.0 0.0 142 145 C 4.7 H 20.5 2.0 2.0 4.5 75.0 19.5 2.0 2.8 2.0 21.5 3.2 2.8 3.0 1.8 146 151 H 4.7 H 4.3 3.0 4.0 4.7 75.0 0.2 3.7 3.7 4.3 3.3 4.2 2.7 3.2 4.0 154 155 * 3.2 M 3.5 75.0 75.0 75.0 75.0 41.5 5.0 37.5 40.0 5.5 6.8 6.5 7.2 75.0 156 168 - 4.6 H 3.6 75.0 75.0 75.0 11.0 75.0 75.0 75.0 75.0 70.1 75.0 75.0 75.0 75.0 169 172 C 4.7 H 5.5 39.2 39.5 4.8 75.0 4.0 5.5 5.8 5.8 5.8 6.8 4.2 5.5 39.8 173 191 H 4.7 H 12.9 2.4 2.4 1.8 75.0 1.9 1.4 6.1 2.1 2.1 1.9 2.0 2.3 2.7 192 193 * 2.1 P 40.5 4.5 5.0 5.0 75.0 3.5 0.5 6.0 40.0 5.5 38.0 39.5 0.0 3.5 195 211 * 3.9 M 70.6 75.0 75.0 75.0 75.0 71.0 5.1 75.0 5.4 75.0 4.8 5.1 5.1 75.0 212 214 - 4.2 M 75.0 75.0 75.0 75.0 75.0 75.0 6.3 75.0 75.0 75.0 7.0 6.3 6.3 75.0 215 216 * 3.9 M 75.0 75.0 75.0 75.0 75.0 75.0 2.5 75.0 5.5 75.0 3.5 3.0 1.0 75.0 218 219 * 1.4 P 3.0 2.0 2.5 3.0 75.0 3.5 3.5 3.0 4.5 4.0 3.5 4.0 3.5 2.0 220 221 E 4.5 M 4.0 4.0 4.5 4.0 75.0 4.0 3.0 4.5 4.5 3.5 3.5 4.5 3.0 4.0 222 225 C 4.8 H 2.0 4.0 3.5 3.8 75.0 3.0 3.8 3.8 3.5 3.8 3.8 3.2 4.6 2.8 226 227 E 4.5 M 1.5 4.0 3.5 3.0 75.0 2.0 3.5 3.5 4.0 3.0 2.5 3.0 3.5 4.0 228 231 * 1.8 P 7.4 6.0 5.0 4.5 75.0 5.2 21.2 5.5 21.2 4.0 21.0 21.0 21.2 3.0 232 242 C 4.7 H 3.6 3.3 3.6 2.8 69.1 16.7 1.1 3.8 1.5 17.4 1.5 1.5 1.4 3.7 244 246 E 5.0 H 0.0 0.0 0.3 0.0 1.3 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.3 248 249 C 5.0 H 3.5 1.5 0.0 5.5 1.5 1.5 3.0 4.5 6.0 4.5 4.0 4.0 5.2 1.0 252 261 H 4.9 H 2.3 2.1 2.6 2.5 3.7 2.1 1.4 9.2 2.5 1.9 2.2 2.4 2.7 3.4 262 263 C 5.0 H 2.5 0.5 1.0 1.5 1.5 2.0 0.0 1.5 0.0 2.0 0.5 0.5 0.0 3.0 264 267 E 4.7 H 0.0 0.2 0.5 0.2 0.2 0.2 0.0 19.2 0.2 0.0 0.0 0.5 0.2 0.0 269 270 - 4.4 M 75.0 38.5 37.5 75.0 37.5 75.0 75.0 75.0 75.0 37.5 75.0 75.0 75.0 1.5 271 273 C 5.0 H 0.7 3.0 1.0 1.3 1.0 1.0 2.7 1.3 0.3 6.5 3.0 3.7 1.0 4.3 274 278 H 5.0 H 2.4 4.2 3.8 4.4 3.8 4.0 3.8 3.6 3.4 3.0 4.2 4.4 4.2 3.6 280 291 H 4.8 H 2.9 3.8 3.8 4.2 3.4 2.5 9.2 11.0 3.9 2.8 3.8 3.5 4.3 3.8 292 295 C 4.8 H 4.9 6.0 6.0 6.1 6.6 5.6 4.6 8.2 4.1 5.6 5.4 5.4 4.1 6.1 296 301 * 2.2 P 15.2 15.8 16.3 50.7 16.1 15.7 14.7 38.5 15.8 15.3 14.7 15.0 14.8 14.7 302 310 E 4.8 H 0.0 0.1 0.2 0.0 0.2 0.1 0.0 0.0 0.4 0.2 0.0 1.2 0.0 0.8 311 313 C 4.9 H 4.3 4.0 6.8 4.7 6.2 4.3 4.7 5.0 4.3 2.3 5.3 4.3 4.0 4.7 314 325 H 4.9 H 3.1 3.8 3.1 3.5 3.3 2.7 10.4 2.5 4.5 2.6 3.7 3.6 3.8 2.9 326 343 * 2.9 P 11.8 31.5 31.8 71.1 39.9 38.5 9.9 71.3 4.4 55.2 9.6 11.2 9.9 31.9 344 345 - 4.5 M 75.0 75.0 75.0 75.0 75.0 75.0 41.0 75.0 75.0 75.0 42.8 8.0 42.8 75.0 346 360 * 3.9 M 75.0 75.0 75.0 75.0 75.0 75.0 4.9 75.0 5.1 75.0 3.7 4.3 3.6 75.0 361 367 - 4.4 M 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 3.8 75.0 5.9 16.6 65.4 75.0 368 370 * 3.9 M 3.3 75.0 75.0 75.0 75.0 4.0 75.0 75.0 6.8 75.0 3.3 7.2 75.0 75.0 372 385 * 3.0 P 4.2 75.0 75.0 34.0 75.0 23.9 23.9 30.0 3.1 34.7 4.1 4.5 3.7 75.0 387 395 * 2.6 P 19.4 35.8 27.7 17.9 59.4 51.9 58.9 12.5 1.8 51.7 1.8 1.1 3.1 45.0 397 403 * 2.4 P 12.6 33.9 23.4 14.0 24.3 14.1 33.6 1.6 64.9 14.1 0.6 34.0 32.7 3.9 406 407 E 4.8 H 0.0 0.0 0.0 0.0 0.0 0.0 0.5 0.0 0.0 1.0 0.5 0.5 1.0 0.0 410 422 H 5.0 H 3.1 2.8 3.9 2.8 3.8 3.1 2.8 2.5 2.9 3.2 2.7 2.6 3.1 4.0 423 424 * 2.1 P 38.0 1.0 0.5 38.0 3.0 37.5 2.5 39.0 4.0 38.0 4.5 4.5 37.5 1.0 425 427 C 4.8 H 2.7 2.0 4.0 3.0 3.7 2.3 3.7 2.7 0.0 2.3 0.3 0.0 3.0 3.3 428 431 E 5.0 H 0.0 0.2 0.2 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 433 437 C 4.7 H 1.4 1.4 2.2 0.4 0.0 15.2 0.6 1.2 0.4 16.6 0.2 16.2 0.6 1.4 438 440 - 4.3 M 75.0 28.0 29.0 75.0 5.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 2.7 442 453 H 4.7 H 3.2 2.9 3.2 2.1 3.1 9.3 1.5 15.1 2.0 2.7 1.8 1.8 1.4 1.8 455 456 H 4.6 H 2.5 2.5 5.0 4.5 6.0 3.0 4.5 5.5 3.5 1.5 4.0 5.0 3.5 3.0 457 458 * 1.4 P 3.5 3.0 75.0 5.5 3.0 2.0 4.0 2.5 7.0 2.0 7.0 7.0 5.0 3.0 459 460 C 4.3 M 42.0 7.0 75.0 5.0 7.0 4.0 0.5 7.0 0.0 7.5 0.5 0.5 0.0 41.5 461 476 * 3.8 M 75.0 66.6 75.0 75.0 57.7 75.0 3.1 75.0 3.2 70.4 3.4 3.3 2.8 75.0 477 478 - 4.6 H 75.0 75.0 75.0 75.0 75.0 75.0 6.5 75.0 75.0 75.0 75.0 75.0 5.0 75.0 479 481 * 3.9 M 75.0 75.0 75.0 75.0 75.0 75.0 2.3 75.0 5.0 75.0 5.0 3.7 2.0 75.0 482 495 - 4.5 M 75.0 75.0 75.0 41.0 75.0 75.0 19.1 70.4 65.1 75.0 65.1 75.0 2.9 75.0 >>>>>>