Reading input alignment file to find conserved blocks of secondary structure The input structure based alignment from Comparer _____________________________________________ >P1;d1cx4a2 -------------------------------------------------------------CHHHHCCHHHCCCCHHHHHHHHHH-CEEEEE-CCCCEEECCCC-C-CCEEEEEEEEEEEEEEE---C--CCEEEEEEECCCCEECCHHHHHC---------CCCCCEEEEEE-EEEEEEEEHHHHHHHCHHHHHHH--HHHHHH--HHHHHHHHHCCCCC-CC-- >P1;d1ft9a2 --------------------------------------------------------------CC--CCCCHHHHCCCCCCCCCCC-CEEEEE-CCCCEEECCCCCC--CCEEEEEECEEEEEEEEC---C-EEEEEEEEECCCEEECCC----------------CCEEEECC-CEEEEEECHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHHCC >P1;d1o5la1 ----------------------------------------------------------------------------CCHHHHHHH-CEEEEE-C-CCEEECCCCCC--CEEEEEEECCEEEEECCC---CC-CEEEEEECCCEECCHHHCCC--------CCCCCCCEEEECC-CEEEEEEEHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHCC >P1;d1o7fa2 -----------------------------------CHHHHHHCCCCCCH--HHHHHHHH----HHCCCCCCCCCCHHHHHHHHHH-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECCEEEEECCCCCHHHC-EEEEEECCCCEECHHHHHC----------CCCCCEEEECC-CEEEEEEEHHHHHHHHHHHHHHC--CCCCCCCCCCCCC-------------- >P1;d1o7fa3 -----------------------------------------------CH--HHHHHHHH----HHCCCHHHCCCCHHHHHHHHHH-CEEEEECCCCCEEECCCC-C-CCEEEEEEECEEEEEE-CCC------EEEEEEECCCEECHHHHCCC---------CCCCCEEEECCCCEEEEEEEHHHHHHHHHHCCCC------------------------------ >P1;d1q3ea- CCCCCHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHC-CCCCCHHHHCC-HHHHHHHHHHHC--CCCCCHHHHCCCHHHHHHHHCC-C-CEEE-CCCCEEECCCC-C-C--CEEEEECCEEEECC------------CEECCCCEECHHHHHHC---------CCCCCEEEECC-CEEEEECCHHHHHHHHC-CHHHH--HHHHHHHHHHHC--------------- >P1;d1wgpa1 ----------------------------------------------------------------CCCCCCCCCCCHHHHHHHHHH-CCCCEE-CCCEECCCCCC-C-CCEEEEECCCCEEEECCCCCCCC--CCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECC-CEEEEEEEHHHHHHHHHHHCC------------------------------- >P1;d1zyba2 -----------------------------------------------------------CCCCCHHHCHHHCCCCHHHHHHHHCCCCEEEEE-CCCCEEECCCCCC--CEEEEEEECEEEEEEECC---CC-CEEEEEEECCEEECHHHHCC---------CCCCCCEEEECC-CEEEEEEEHHHHHHCHHH------CHHHHHHCCHHHHHHHHHHHHCCC---C >P1;d2bgca2 -------------------------------------------------------------------CHHHHHHH---HH-HHCC-CCCEEE-ECCCEEECCCCCC--CEEEEEEECEEEEEEECC---CCCEEEEEEEECCEEEECCCCCC--------CCCCCCCEEEECCCEEEEEEEEHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHHHHHHCC >P1;d2coha3 ---------------------------------------------------------------------------------------CCEEE-CCCCEEECCCCCCCCCCCEEEEECCEEEEEECC---CCCEEEEEEECCCCEECHHHHCC----------CCCCCEEEECC-CEEEEECCC----------CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHC >P1;d2fmya1 --------------------------------------------------------------CCCCCCCHHHHCCCHHHCCCHHH-CEEEEE-CCCCEEECCCCCC--CEEEEEEECEEEEEEECC---C-CEEEEEEEECCCEEECCC----------------CCEEEECC-CEEEEEEEHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHCC >P1;d2gaua2 ------------------------------------------------------------CHHHCH--HHHCCCCHHHHHHHHHH-CEEEEE-CCCCEEECCCCCC--CEEEEEEECCEEEEEC--------CEEEEEECCCCEECHHHHHH--------CC-CCCCEEEECC-CEEEEEEEHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHHHHHHHC >P1;d2z69a1 ------------------------------------------------------CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECCEEEEC-------C---CCEEECCCEEECHHHHHCC----------CCCCEEEECC-CEEEEEEEHHHHHHHHCCCHHHH--HHHHHHHHHCC---CCC---------- >P1;d3e5ua2 ---------------------------------------------------------CCCCCCCCCCCCCCCHHH---HH-HH---CEEEEE-CCCCEEECCCCCC--CCEEEEEECEEEEEEEC----CCCEEEEEEEECCCEECCCC------------CCCCEEEEEECC-CEEEEEECHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHCCC >P1;d3iwza1 -------------------------------------------------------------------------CCHHHHHHHHCC-CEEEEE-CCCCEEECCCCCC--CEEEEEEECCEEEEEECC---CCCEEEEEEECCCCEECCHHHCC--------CCCCCCCEEEECC-CEEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >P1;d3kcca1 ----------------------------------------------------------------------------CCCCCCHHH-CCCCC---CCCEEECCC-CC--CEEEECCCCEEEEEEEC-----CCEEEEEEEECCCEECCCCCC-----------CCCCCEEEECC-C--CCEEEHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHC >P1;d3of1a2 -------------------------------------------------------------CHHHHHCHHHCCCCHHHHHHHHHC-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECEEEEEEC------CC-EEEEEEECCCEECHHHHHHC---------CCCCCEEEECC-CEEEEEEEHHHHHHHCCCCHHHH--HHCCCCCC------------------- >P1;d3pnaa- ---------------------------------------------CCC-C-CCCHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHH-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECCEEEEEC--------CEEEEEECCCCEECCHHHHHC---------CCCCCEEEECC-CEEEEEEEHHHHHHHCHHHHC------------------------------- >P1;d3r6sa1 -----------------------------------------------------------CHHHHHHCCHHHCCCCHHHHHHHHHC-CEEEEE-CCCCEEECCCCCC--CCEEEEEECCEEEEEECC---CCCEEEEEEECCCCEECCHHHHC--------CC-CCCCEEEECC-CEEEEEECHHHHHHHHH-----HCHHHHHHHHHHHHHHHHHHHHHHHHHHHC >P1;d3ukna- ---CHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHCCCCCHHHHCHHHCCCCHHHHHHHHHH-CEEECC--CCCEEECCCC-C-CCEEEEEEECCEEEECC-------C-CEEEEECCCCCCCCCCCC-C---------CCCCCEEEECC-CCEEEEEEHHHHHHHCCCHHHHC--CCCCCCCCCCCCC-------------- >P1;d4d7sa- CCCCCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHCHHHHHHCCCCCCCCHHHHHHHHHH-CEEEEE-CCCCEEECCCC-C-CCCEEEEEECCEEEECC---CCCC---EEEEECCCCEECCHHHHCC---------CCCCCEEEECC-CEEEEEECHHHHHHHHHHCHHHH--HHHHHHHHHHHCCC------------- >P1;d4muva1 --------------------------------------------------CHHHHHHHCCHHHHHCCCHHHHHCCHHHHHHHHHH-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECCEEEECC----------CCEEECCCCEECHHHHHHC---------CCCCCEEEECC-CEEEEEEEHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHCCC---------- >P1;d4offa- ------------------------------------------------C--HHHHHHHH----HHHCCHHHCCCCHHHHHHHHHH-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECCEEEEE-C-C------EEEEEECCCCEECHHHHCCC---------CCCCCEEEECCCCEEEEEEEHHHHHHHHCHHHCC--------------CC-------------- >P1;d5c8wa- ----------------------------------------------------CCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECCEEEEEC--------CEEEEECCCCCEECHHHHHC----------CCCCCEEEECC-CEEEEEEEHHHHHHHHCCC--------------------------------- >P1;d5e16a- --------------------------------CCCCCCHHHHHHHHEE-C-CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECCEEEECC---------CEEEEECCCCEECHHHHHHC---------CCCCCEEEECC-CEEEEEEEHHHHHHHCC----------------------------------- >P1;d5j3ua1 --------------------------------------------------------------CHHHHCHHHCCCCHHHHHHHHHH-CEEEEC-CCCCEEECCCC-C-CCEEEEEEECCEEEEEC---CCC---CEECCCCCCCEECCHHHHHC---------CCCCCEEEEC--CCEEEEEEHHHHHHHCHHHHHHH--HHHC----------------------- >P1;d5k8sa1 ------------------------------------------------------CHHHHHHHHHHCCCHHHCCCCHHHHHHHHCC-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECCEEEEEC--------CEEEEEECCCCEECCHHHHHC---------CCCCCEEEECC-CEEEEEEEHHHHHHHCHHHHHHH--HHHHHH--CHHHHHHC-CCCCCCCC-- >P1;d6ftfb1 ------------------------------------CCCCCCCCCCCC-C-CCCHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHH-CEEEEE-ECCCEEECCCCCC-CCEEEEEEECCEEEECC---------CEEEEECCCCEECHHHHHHC---------CCCCCEEEECCCEEEEEEEEHHHHHHHCCCCHHHH--HHHC----------------------- >P1;d6ftfb2 -------------------------------------------------------------CCCHHHCHHHCCCCHHHHHHHHCC-EEEEEE-CCCCEEECCCC-C-CCEEEEEEECEEEEEEE---CCCCCEEEEEEEECCCEECHHHHHHC---------CCCCCEEEECC-CEEEEEEEHHHHHHHHHHHHHHH--HHHHHCHHHHHHHHHHHHCCCCCCCCC >P1;d6rsxa2 -------------------------------------------------------------CHHHHHCCCC-CCCHHHHHHHHHH-CEEEEE-CCCCEEECCCC-C-CCEEEEEEECCEEEEEE---EC-CEEEEEEEECCCCEECHHHHHHC---------CCCCCEEEECC-CEEEEEEEHHHHHHHCHHHHHHH--HHHHHHHC----------------CCC PSA >P1;d1cx4a2 -------------------------------------------------------------6a2037070063087831460383-1a4560-87855013386-a-08200002552041006---5--8942416513526101010002b---------45031104048-70401106290066007402840--573076--33840584186328-05-- >P1;d1ft9a2 --------------------------------------------------------------56--a18157048489065017b-085442-778560156b4a7--50100047030100448a---b-651300305621001053----------------a1202035-703031173740572177-----07603514410704276046526756789 >P1;d1o5la1 ----------------------------------------------------------------------------160481472-174361-7-86403627350--83000005210312535a---98-38457516224002045036--------b824032101015-a04000042940473076------9704730682375685773577787569 >P1;d1o7fa2 -----------------------------------8812800644a056--81075036----306a070069036700330042-031362-77551116286-5-18100000311011330a6b58850-7456316604011110066----------24081102055-602002043a4037026515830--3620737106898-------------- >P1;d1o7fa3 -----------------------------------------------79--76557416----7037291059167811550051-035243792843015385-a-2510000350001133-a97------84362166943135800759---------6509210204567030120219215404763888------------------------------ >P1;d1q3ea- ab3760796116a70585927a53853443154227-42789649726-675458424960--02a6071039168800140052-0-2402-14833006555-7-0--0100271301175c------------75255030010100156---------76151204046-20301206393036008-45a23--840463077348--------------- >P1;d1wgpa1 ----------------------------------------------------------------3aa162088079802810571-178541-88724006294-5-084001057250202348ab5a9--a666660748420034006001439629c415083002046-705041050840250067359------------------------------- >P1;d1zyba2 -----------------------------------------------------------9827100606006b0769605602807256551-8595401738660--74000008420112543a---87-7365642813300013004b---------934081203055-504000043930474028------584047005246757786777777---c >P1;d2bgca2 -------------------------------------------------------------------86146026---10-3829-183650-7583300417384--21000026250211335b---95777531708622001206396--------57126730020329701003050460791065-----3770570064067637766783887856b >P1;d2coha3 ---------------------------------------------------------------------------------------93472-84753007268069832013026430301425a---87827332508442000100059----------66071303006-704040065----------a07--7925930773386265666747757787 >P1;d2fmya1 --------------------------------------------------------------4754a560272086a90770484-074581-86644016252b5--50000046040100326a---a-843410205400001043----------------90301035-801001014860790277-----26205413630644177436826895687 >P1;d2gaua2 ------------------------------------------------------------406208--50173088913730483-076390-8675400558571--830000350503014a--------74532507453000030225--------97-5040102044-80600002180055017-----919503720773375377577747745778 >P1;d2z69a1 ------------------------------------------------------79318514a2036150061068810460075-052281-97444005576-5-0820000162404137-------9---a57709565001351025b----------9601001035-603004031a1046017908704--65177658979---a8a---------- >P1;d3e5ua2 ---------------------------------------------------------99152a723602407047---11-93---083551-8695200649380--61000026040300116----97637330203440000106------------55b640301044-704000064910550275-----38803620720470185147847747858 >P1;d3iwza1 -------------------------------------------------------------------------169702750073-075471-7674200427480--83000026330010426a---78834325615652002140047--------b2a4063001026-702002041a406700976056026404910741477286756637666687 >P1;d3kcca1 ----------------------------------------------------------------------------591230383-07563---764100539-60--93010048220110427-----983443450675200206005-----------e6170203046-8--000060840560187-----46603830472277287556738556588 >P1;d3of1a2 -------------------------------------------------------------690053050067088822750493-197531-54952016176-9-06400003512021338------b6-a4376174341010100128---------44041103047-70301104393068209302840--6860636d------------------- >P1;d3pnaa- ---------------------------------------------555-3-808982444067206629204808aa43720220-034372-84852006376-a-07200002533011358--------b85452236662023600065---------66062103056-70500002490035001b345------------------------------- >P1;d3r6sa1 -----------------------------------------------------------e657203602004c078911781086-068252-6873301526586--540000063503105359---6b848345402424001050039--------76-6060002045-50400005193059028-----837505710850273288787777579688 >P1;d3ukna- ---412763262576077527aa4167226726860000520468592c47a524730583915006170099077803220101-024104--3712002392-4-04000000623010149-------b-743351485200069039-a---------91030202046-8050000107102610837a118--0476081042608-------------- >P1;d4d7sa- 782570775145a70793379743542544172047130548a61836-66632640294155016207205c086701430024-053101-23632005085-8-61200001531011027---7385---5254054051010101027---------35020002045-20100204490054018717710--67056305625871------------- >P1;d4muva1 --------------------------------------------------86a878148305900940600b5078a31450062-040442-65943005765-8-06300000552041725----------565614513102010034a---------65021202028-60000003392065018307803--4304611782496387b---------- >P1;d4offa- ------------------------------------------------9--a5375048----1037082058078910460062-083261-56755005377-5-1440000264402114-9-9------75362036543024600757---------361910010356a020010318514714655879--------------ab-------------- >P1;d5c8wa- ----------------------------------------------------18a824740340055293048068700610044-045471-97654004565-6-0820000063500124c--------a7536306412001150006----------67050103035-8050100428404702757--------------------------------- >P1;d5e16a- --------------------------------ca99870724088126-9-31789048104700470a3049086920640076-050030-75843006364-7-01100001535001449---------94464126440012500377---------67081202055-60200006281038119----------------------------------- >P1;d5j3ua1 --------------------------------------------------------------920371a2053089941850693-084361-a5844006386-9-07100005635032146---6a9---55445125451022500077---------5606210405--602033072a2047202a40574--8766----------------------- >P1;d5k8sa1 ------------------------------------------------------6a636402820580a0075067942570063-073431-77754005376-8-07200001524020306--------b46157076331010100128---------55021204056-60400207392046004304910--673037--43830763-a0628107-- >P1;d6ftfb1 ------------------------------------726871a2a045-4-80799317401710580900471a9830540000-074352-7565200659478-05300003513011259---------86565136330002510037---------35031203024960300104360031101b81584--5867----------------------- >P1;d6ftfb2 -------------------------------------------------------------5a2047070089077831530281-186450-55753006454-5-14400003522011102---5a987544114067131000100046---------03001000026-40300101073087001402930--471594841920370486a62850769 >P1;d6rsxa2 -------------------------------------------------------------7a20560700-8089842630492-067261-75735014197-9-0a201004645031234---8a-b9653354135351010200059---------45050001037-604011064a307721a204730--56318838----------------799 Translating the sequences -------------------------------------------------------------******C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEE**EEEEE*---*--****EEEEE*CCCEEC*HHH***---------CCCCCEEEE**-*EEEEEEEHHHHHHH********--HH****--**************-**-- --------------------------------------------------------------**--*C******C**********-CEEEEE-CCCCEEECCCC*C--C*EEEEEEC*EEEEE***---*-***EEEEE*CCCEE****----------------CCEEEECC-CEEEEEE*HHHHHHH***-----**HH************************* ----------------------------------------------------------------------------**HHHHH**-CEEEEE-C-CCEEECCCC*C--CEEEEEEEC*EEEEE***---**-**EEEEE*CC*E*C*HH***--------**CCCCCEEEECC-CEEEEEEEHHHHHHH***------*HH************************* -----------------------------------**************--********----****C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEEE*********-*EEEEE*CCCEEC*HHH**----------CCCCCEEEECC-CEEEEEEEHHHHHHH********--*************-------------- -----------------------------------------------**--********----****C*****CCHHHHHHHH**-CEEEEE*CCCCEEECCCC-C-*CEEEEEEEC*EEEEE-***------*EEEEE*CCCEEC*HHH***---------CCCCCEEEECC*CEEEEEEEHHHHHHH*******------------------------------ ************************************-***********-************--****C*****CCHHHHHHHH**-C-*EEE-CCCCEEECCCC-C-*--*EEEEEC*EEEE**------------*EE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEE**HHHHHHH**-*****--HH**********--------------- ----------------------------------------------------------------***C*****CCHHHHHHHH**-C***EE-CCC*E**CCCC-C-*CEEEEE**C*EEEE********--****EEE*CCC**C*HHH************CCCCCEEEECC-CEEEEEEEHHHHHHH******------------------------------- -----------------------------------------------------------********C*****CCHHHHHHHH***CEEEEE-CCCCEEECCCC*C--CEEEEEEEC*EEEEE***---**-**EEEEE*CC*EEC*HHH**---------*CCCCCEEEECC-CEEEEEEEHHHHHH****------*HH*********************---* -------------------------------------------------------------------C*******---HH-HH**-C**EEE-*CCCEEECCCC*C--CEEEEEEEC*EEEEE***---*****EEEEE*CC*EE*******--------**CCCCCEEEECC**EEEEEEEHHHHHHH***-----**HH************************* ---------------------------------------------------------------------------------------**EEE-CCCCEEECCCC*C**C**EEEEEC*EEEEE***---*****EEEEE*CCCEEC*HHH**----------CCCCCEEEECC-CEEEEE***----------***--*HH************************* --------------------------------------------------------------*****C*****CC*HHH***H**-CEEEEE-CCCCEEECCCC*C--CEEEEEEEC*EEEEE***---*-***EEEEE*CCCEE****----------------CCEEEECC-CEEEEEEEHHHHHHH***-----**HH************************* ------------------------------------------------------------******--*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC*C--CEEEEEEEC*EEEEE*--------**EEEEE*CCCEEC*HHH**--------**-CCCCEEEECC-CEEEEEEEHHHHHHH**-----***HH************************* ------------------------------------------------------*************C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEE*-------*---**EEE*CC*EEC*HHH***----------CCCCEEEECC-CEEEEEEEHHHHHHH********--HH*********---***---------- ---------------------------------------------------------**********C*******---HH-HH---CEEEEE-CCCCEEECCCC*C--C*EEEEEEC*EEEEE**----*****EEEEE*CCCEEC***------------*CCC**EEEECC-CEEEEEE*HHHHHHH***-----**HH************************* -------------------------------------------------------------------------CCHHHHHHHH**-CEEEEE-CCCCEEECCCC*C--CEEEEEEEC*EEEEE***---*****EEEEE*CCCEEC*HHH**--------**CCCCCEEEECC-CEEEEEEEHHHHHHH**********HH************************* ----------------------------------------------------------------------------******H**-C****---CCCEEECCC-*C--CEEEE***C*EEEEE**-----****EEEEE*CCCEEC*****-----------CCCCCEEEECC-C--**EEEHHHHHHH***-----**HH************************* -------------------------------------------------------------******C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEEE*------**-*EEEEE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEEEEHHHHHHH********--HH******------------------- ---------------------------------------------***-*-****************C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEEE*--------**EEEEE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEEEEHHHHHHH******------------------------------- -----------------------------------------------------------********C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC*C--C*EEEEEEC*EEEEE***---*****EEEEE*CCCEEC*HHH**--------**-CCCCEEEECC-CEEEEEE*HHHHHHH**-----***HH************************* ---****************************************************************C*****CCHHHHHHHH**-CEEE**--CCCEEECCCC-C-*CEEEEEEEC*EEEE**-------*-*EEEEE*CCC**C*****-*---------CCCCCEEEECC-C*EEEEEEHHHHHHH********--*************-------------- ************************************************-******************C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*C*EEEEEEC*EEEE**---****---EEEEE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEEE*HHHHHHH********--HH************------------- --------------------------------------------------*****************C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEE**----------**EEE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEEEEHHHHHHH********--HH***************---------- ------------------------------------------------*--********----****C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEEE-*-*------*EEEEE*CCCEEC*HHH***---------CCCCCEEEECC*CEEEEEEEHHHHHHH*******--------------**-------------- ----------------------------------------------------***************C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEEE*--------**EEEE**CCCEEC*HHH**----------CCCCCEEEECC-CEEEEEEEHHHHHHH****--------------------------------- --------------------------------****************-*-****************C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEE**---------*EEEEE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEEEEHHHHHHH**----------------------------------- --------------------------------------------------------------*****C*****CCHHHHHHHH**-CEEEE*-CCCCEEECCCC-C-*CEEEEEEEC*EEEEE*---***---*EE****CCCEEC*HHH***---------CCCCCEEEEC--C*EEEEEEHHHHHHH********--HH**----------------------- ------------------------------------------------------*************C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEEE*--------**EEEEE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEEEEHHHHHHH********--HH****--********-********-- ------------------------------------************-*-****************C*****CCHHHHHHHH**-CEEEEE-*CCCEEECCCC*C-*CEEEEEEEC*EEEE**---------*EEEEE*CCCEEC*HHH***---------CCCCCEEEECC**EEEEEEEHHHHHHH********--HH**----------------------- -------------------------------------------------------------******C*****CCHHHHHHHH**-*EEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEEE*---*******EEEEE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEEEEHHHHHHH********--HH************************* -------------------------------------------------------------******C***-*CCHHHHHHHH**-CEEEEE-CCCCEEECCCC-C-*CEEEEEEEC*EEEEE*---**-****EEEEE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEEEEHHHHHHH********--HH******----------------*** 51206.tem _________________________________ ---------------------------------------------------****************C*****CCHHHHHHHH**-CEEEEE-CCCCEEECCCC*C-*CEEEEEEEC*EEEEE***---*****EEEEE*CCCEEC*HHH***---------CCCCCEEEECC-CEEEEEEEHHHHHHH********-*HH************************* Structural block scores 0 50 - 4.6 H 75.0 75.0 75.0 55.6 72.4 8.1 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 69.5 75.0 8.8 6.2 73.7 73.7 75.0 52.0 75.0 75.0 57.2 75.0 75.0 51 66 * 3.2 M 48.7 62.3 75.0 21.8 22.4 13.5 62.4 39.6 75.0 75.0 53.5 48.1 17.8 31.5 75.0 75.0 48.3 4.6 40.2 4.3 3.5 5.2 22.1 8.5 3.9 52.9 17.8 4.4 48.7 48.8 68 72 * 1.7 P 3.2 4.2 75.0 4.4 4.8 4.0 4.8 4.7 3.4 75.0 3.4 3.2 2.4 2.6 75.0 75.0 3.6 4.6 3.7 5.0 5.3 4.5 4.6 4.8 5.3 4.1 4.5 4.0 4.8 18.0 73 74 C 4.5 M 4.0 6.0 75.0 1.5 3.5 3.5 3.5 3.5 4.0 75.0 4.0 4.0 3.0 5.5 3.5 75.0 4.0 4.0 3.5 3.5 4.0 3.5 3.5 3.0 4.0 4.0 3.0 5.8 3.5 4.0 75 82 H 4.6 H 4.0 4.1 12.4 2.4 3.4 2.6 4.1 4.2 39.0 75.0 5.4 4.4 3.4 39.2 3.8 12.2 4.5 4.9 4.4 2.9 2.6 3.9 3.5 2.8 3.4 5.2 4.2 3.6 3.6 4.5 83 84 * 1.4 P 5.5 9.2 4.5 3.0 3.0 3.5 4.0 4.0 5.5 75.0 6.0 5.5 6.0 75.0 5.0 5.5 6.0 1.0 7.0 0.5 3.0 4.0 4.0 4.0 6.5 6.0 4.5 0.0 4.5 5.5 87 91 E 4.7 H 5.1 4.6 4.2 3.0 3.4 16.6 5.0 4.4 4.4 5.0 5.0 5.0 3.6 4.4 4.8 19.2 5.0 3.8 4.6 2.2 2.0 2.8 4.0 4.2 1.6 4.4 3.6 4.2 4.6 4.4 93 96 C 4.9 H 7.0 6.8 24.0 6.0 5.8 4.0 6.2 6.8 5.8 6.0 6.0 6.5 6.0 7.0 6.0 23.0 5.8 6.2 6.0 21.5 3.5 6.0 5.8 6.8 6.0 6.9 6.5 5.8 5.5 5.5 97 99 E 4.9 H 2.0 2.3 2.3 1.0 1.3 1.0 1.3 1.7 1.0 1.0 1.7 1.3 1.3 0.7 0.7 0.3 1.0 0.7 1.3 0.7 0.7 1.0 1.7 1.3 1.0 1.3 1.3 0.7 1.0 2.0 100 103 C 5.0 H 5.0 6.6 4.5 5.5 5.2 5.2 5.2 6.0 3.8 5.8 3.8 5.8 5.8 5.5 4.2 23.0 5.0 5.5 4.5 4.0 4.5 5.8 5.5 5.0 4.8 5.8 5.2 6.0 4.8 5.2 109 115 E 4.8 H 1.3 1.7 1.1 0.6 1.3 12.1 2.4 1.7 1.3 2.0 1.4 1.6 1.3 1.3 1.6 2.3 1.7 1.3 1.4 0.9 1.1 1.1 1.7 1.1 1.0 1.7 1.1 1.6 1.7 1.9 118 122 E 4.8 H 1.0 1.0 2.2 1.6 1.6 2.8 1.4 1.8 1.4 1.6 0.8 1.6 3.0 0.8 1.0 1.2 1.8 2.0 1.8 1.2 0.8 2.8 1.6 1.4 1.8 2.0 1.0 1.8 0.6 1.8 123 125 * 3.0 P 52.0 7.5 6.2 5.5 31.5 54.2 7.5 5.8 6.5 5.8 6.2 53.5 75.0 27.3 6.2 28.0 52.7 52.7 5.7 53.0 52.3 51.7 53.0 54.2 53.0 52.0 52.0 53.0 50.7 51.3 126 128 - 4.4 M 51.7 75.0 75.0 8.2 52.3 75.0 9.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 28.3 75.0 53.0 75.0 75.0 30.5 75.0 75.0 30.2 31.2 129 133 * 3.0 P 19.6 19.7 20.6 19.0 61.6 75.0 35.1 20.0 7.0 6.4 20.1 47.2 61.8 6.4 6.0 19.8 35.6 48.9 7.5 48.7 47.6 75.0 61.4 48.5 61.8 47.8 48.1 61.6 6.6 21.3 134 138 E 4.8 H 3.4 1.2 4.4 3.8 3.2 32.8 4.8 4.6 3.2 2.6 1.4 3.0 5.9 1.6 3.4 3.2 4.2 3.6 3.2 3.2 3.2 4.6 3.2 3.4 3.8 3.8 3.8 4.6 2.0 3.2 140 142 C 4.9 H 4.3 3.0 2.7 3.3 6.3 2.7 5.3 2.3 3.3 3.3 1.3 4.0 5.3 2.7 4.3 4.7 3.7 6.0 3.3 5.0 3.0 3.0 5.0 2.3 4.7 4.7 4.0 4.0 3.7 4.3 143 144 E 4.8 H 0.5 0.0 0.0 0.5 2.0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.5 1.0 0.0 0.0 0.5 0.5 1.5 0.0 0.0 0.5 0.5 0.0 0.5 0.5 147 149 H 4.4 M 0.3 27.7 3.0 0.3 2.7 0.3 1.3 1.0 3.0 0.0 27.3 1.7 2.0 27.0 1.3 2.0 0.3 2.0 1.7 4.0 0.7 0.3 2.0 1.7 1.7 1.7 0.3 2.0 0.3 0.7 150 152 * 2.2 P 4.5 75.0 28.0 29.0 7.0 4.0 2.0 30.2 30.0 29.7 75.0 27.3 6.2 75.0 28.7 51.7 3.7 3.7 29.0 31.5 3.0 5.8 6.3 27.0 5.7 4.7 3.7 3.3 3.3 4.7 153 161 - 4.8 H 75.0 75.0 60.5 75.0 75.0 75.0 5.6 67.7 59.7 75.0 75.0 60.1 75.0 67.2 59.8 75.0 75.0 75.0 59.8 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 75.0 162 166 C 4.8 H 2.6 47.3 2.2 3.0 4.4 4.0 3.4 3.2 3.8 4.0 46.8 16.8 18.2 5.3 4.7 5.7 2.6 4.0 17.4 2.6 2.0 2.8 4.0 3.6 4.4 3.8 2.6 2.4 0.8 2.8 167 170 E 5.0 H 1.2 1.0 0.5 0.8 0.8 1.5 0.5 1.2 0.5 1.5 1.0 0.8 0.2 1.0 0.2 1.2 1.0 1.0 0.5 1.0 0.5 1.0 0.2 1.0 1.0 1.2 1.5 1.2 0.0 0.2 171 172 C 4.8 H 6.0 4.0 3.0 5.0 4.5 5.0 5.0 5.0 2.5 3.0 4.0 4.0 4.0 4.0 4.0 5.0 5.5 5.5 4.5 5.0 4.5 5.0 4.0 4.0 5.0 40.0 5.5 3.0 4.0 5.0 175 181 E 4.8 H 1.7 2.1 1.1 1.1 1.1 1.7 2.1 1.1 1.3 2.0 0.4 1.1 1.4 1.4 1.1 22.3 1.3 1.0 1.3 0.9 1.0 0.4 0.9 1.4 1.1 2.1 1.9 1.1 0.7 1.7 182 188 H 4.9 H 3.3 4.0 4.1 3.9 3.1 3.4 2.7 4.3 3.9 65.0 4.9 2.7 3.2 3.4 4.1 3.3 4.4 3.0 3.9 2.4 3.1 3.6 3.9 3.6 3.3 3.9 3.4 2.0 3.6 4.8 189 196 * 2.4 P 3.1 48.8 48.5 3.8 14.9 13.4 22.5 48.1 48.2 49.1 48.9 49.0 4.5 48.6 4.1 48.9 3.2 21.8 49.1 4.8 4.0 3.8 14.9 40.1 57.5 4.1 2.6 4.8 2.4 3.4 199 200 H 4.5 M 6.0 3.0 3.5 4.5 75.0 6.0 75.0 6.0 3.5 5.5 1.0 2.5 5.5 4.0 2.0 3.0 7.0 75.0 2.5 2.0 6.5 3.5 75.0 75.0 75.0 7.5 6.5 6.5 5.5 5.5 201 225 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