Motif    Start   End  Length   Motif
Motif1    24     28     5      [S][AM][IM][KR][T]
Motif2    55     58     4      [LI][IV][D][KR]
Motif3    63     66     4      [SG][TL][LI][H]


Motif marked on the alignment

                                 *****                          ****  
d1fjgt  : RNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAA
d2qalt  : NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQA


            ****                                                      
d1fjgt  : KGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGGLSA
d2qalt  : AKGLIHKNKAARHKANLTAQINKLA--------------