Secondary structure calculation program - copyright by David Keith Smith, 1989
3rp2A.pdb
3RP2 SERINE PROTEINASE RAT MAST CELL PROTEASE /II$ (/RMCPII$) RAT (RATTUS $RATTUS) ATYPICAL MAST CELLS FROM THE
Sequence length - 224
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 16 ILE I 0 0 999.9 127.2 177.4 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 18 61
2 A 17 ILE I B B A + 176 0 -106.9 122.3 173.9 6.3 999.9 153.3 176 -3.2 176 -1.9 0 0.0 0 0.0 12 55
3 A 18 GLY G S S S+ 0 0 84.5 21.4 176.5 109.1 103.5 44.5 0 0.0 0 0.0 0 0.0 0 0.0 9 44
4 A 19 GLY G - 0 0 -109.7 -158.3 -179.9 -117.6 60.0 106.9 0 0.0 0 0.0 0 0.0 0 0.0 10 39
5 A 20 VAL V E E AA - 143 0 -132.9 166.7 167.4 -82.2 36.7 149.9 143 -2.1 143 -2.2 0 0.0 0 0.0 7 37
6 A 21 GLU E E E AA - 142 0 -59.0 144.4 165.0 -120.6 51.2 121.6 0 0.0 0 0.0 0 0.0 0 0.0 8 36
7 A 22 SER S e - 0 0 -71.5 161.5 161.6 -94.2 31.7 111.8 141 -1.5 0 0.0 0 0.0 0 0.0 8 40
8 A 23 ILE I t > T - 0 0 -69.3 127.4 -173.6 -91.0 63.6 122.5 0 0.0 11 -1.8 0 0.0 0 0.0 5 28
9 A 24 PRO P T T 3 TS- 0 0 -54.7 127.3 179.9 -5.6 101.9 107.0 0 0.0 0 0.0 0 0.0 0 0.0 8 37
10 A 25 HIS H T T 3 TS+ 0 0 70.6 2.3 -174.7 124.6 93.9 57.3 0 0.0 0 0.0 0 0.0 0 0.0 9 43
11 A 26 SER S S t < TS+ 0 0 -72.5 -6.6 -179.9 52.2 70.4 60.4 8 -1.8 0 0.0 0 0.0 0 0.0 7 39
12 A 27 ARG R t > T + 0 0 -126.6 68.0 -167.7 176.4 68.7 130.5 0 0.0 15 -2.3 0 0.0 0 0.0 7 54
13 A 28 PRO P T T 3 TS+ 0 0 -58.1 -19.8 175.5 65.1 71.4 52.5 0 0.0 106 -0.7 0 0.0 0 0.0 12 55
14 A 29 TYR Y T e 3 TS+ 0 0 -69.8 -18.2 -169.2 119.2 76.5 60.3 0 0.0 34 -2.4 0 0.0 0 0.0 12 65
15 A 30 MET M E E BB < T - 33 0 -72.7 128.7 173.7 -167.4 44.3 121.4 12 -2.3 0 0.0 0 0.0 0 0.0 14 79
16 A 31 ALA A E E BB - 32 0 -105.4 129.6 164.8 -151.9 11.9 156.7 32 -2.4 32 -0.9 0 0.0 18 -0.6 14 79
17 A 32 HIS H E E BBC - 31 54 -95.9 117.5 -179.9 -151.2 19.6 155.2 54 -2.6 54 -2.3 0 0.0 19 -0.6 13 76
18 A 33 LEU L E E BBC - 30 53 -96.4 125.0 173.8 -163.1 9.5 146.6 30 -2.5 30 -1.6 16 -0.6 20 -0.6 12 71
19 A 34 ASP D E E BBC - 29 52 -108.9 108.2 -163.2 -165.1 20.1 152.1 52 -3.1 52 -2.5 17 -0.6 0 0.0 12 57
20 A 35 ILE I E E BBC - 28 51 -111.3 124.6 165.9 -158.4 23.4 157.0 28 -2.3 28 -2.3 18 -0.6 22 -0.6 16 45
21 A 36 VAL V E E BBC - 27 50 -95.3 109.3 172.6 -148.1 26.7 155.2 50 -2.9 49 -2.0 0 0.0 50 -1.8 13 27
22 A 37 THR T e > T - 0 0 -68.1 157.4 -177.5 -98.0 30.3 107.9 26 -2.5 25 -1.7 20 -0.6 0 0.0 12 24
23 A 38 GLU E T T 3 TS+ 0 0 -58.6 -16.7 170.3 53.1 126.5 37.5 0 0.0 0 0.0 0 0.0 0 0.0 7 18
24 A 39 LYS K T T 3 TS- 0 0 -104.5 16.7 165.8 -101.5 125.5 63.4 0 0.0 0 0.0 0 0.0 0 0.0 5 14
25 A 39A GLY G S t < TS+ 0 0 76.6 29.2 173.7 142.9 73.7 35.8 22 -1.7 0 0.0 0 0.0 0 0.0 6 17
26 A 39B LEU L e - 0 0 -101.1 143.4 175.3 -132.3 47.1 144.5 0 0.0 22 -2.5 0 0.0 28 -0.7 8 20
27 A 39C ARG R E E BB + 21 0 -97.7 119.5 177.4 163.2 35.7 151.4 0 0.0 0 0.0 0 0.0 0 0.0 8 26
28 A 40 VAL V E E BB - 20 0 -121.0 164.7 169.3 -132.8 24.9 128.2 20 -2.3 20 -2.3 26 -0.7 0 0.0 9 43
29 A 41 ILE I E E BB + 19 0 -118.3 158.6 163.4 167.4 22.7 156.9 0 0.0 0 0.0 0 0.0 0 0.0 11 57
30 A 42 CYS C E E BB - 18 0 -148.3 177.4 172.7 -118.6 27.3 162.2 18 -1.6 18 -2.5 0 0.0 0 0.0 16 68
31 A 43 GLY G E E BB + 17 0 -105.2 -176.6 179.3 163.3 31.1 121.6 182 -3.7 0 0.0 0 0.0 0 0.0 17 78
32 A 44 GLY G E E BB - 16 0 176.5 177.3 -174.5 -122.8 25.1 157.9 16 -0.9 16 -2.4 0 0.0 0 0.0 16 85
33 A 45 PHE F E E BBD - 15 41 -151.5 136.7 -174.2 -116.6 20.4 176.2 41 -1.7 41 -2.9 0 0.0 0 0.0 14 79
34 A 46 LEU L E E B D + 0 40 -82.4 120.8 -174.7 167.0 32.2 134.3 14 -2.4 108 -2.0 0 0.0 0 0.0 14 71
35 A 47 ILE I S e S- 0 0 -109.7 -17.0 174.0 -3.6 70.2 54.6 39 -2.2 0 0.0 0 0.0 0 0.0 13 59
36 A 48 SER S S S S- 0 0 -163.8 175.0 -177.1 -83.0 88.4 150.8 39 -1.3 0 0.0 0 0.0 0 0.0 7 43
37 A 49 ARG R S S S+ 0 0 -68.6 -10.0 175.4 28.2 127.0 37.7 0 0.0 99 -2.3 0 0.0 0 0.0 10 42
38 A 50 GLN Q S e S+ 0 0 -124.4 -0.1 -171.4 69.0 109.8 62.8 0 0.0 95 -3.3 0 0.0 0 0.0 11 46
39 A 51 PHE F E E B E - 0 94 -131.6 131.0 173.7 -168.8 49.0 167.1 0 0.0 35 -2.2 0 0.0 36 -1.3 12 59
40 A 52 VAL V E E BDE - 34 93 -110.8 135.1 171.5 -138.8 17.8 159.9 93 -1.7 93 -2.9 0 0.0 0 0.0 14 72
41 A 53 LEU L E E BDE + 33 92 -90.2 144.4 -177.7 139.5 37.9 130.0 33 -2.9 33 -1.7 0 0.0 0 0.0 13 80
42 A 54 THR T E E B E - 0 91 -166.0 -179.0 -178.2 -65.1 52.2 149.5 91 -1.4 91 -2.1 0 0.0 0 0.0 16 78
43 A 55 ALA A g > T - 0 0 -83.0 144.9 171.6 -130.5 33.9 140.8 0 0.0 46 -1.5 0 0.0 0 0.0 16 71
44 A 56 ALA A G G > TS+ 0 0 -60.7 -27.2 177.5 66.9 107.6 39.6 0 0.0 47 -1.4 0 0.0 0 0.0 12 62
45 A 57 HIS H G G 3 TS+ 0 0 -73.1 -3.5 178.5 73.0 83.1 49.0 0 0.0 0 0.0 0 0.0 0 0.0 7 55
46 A 58 CYS C G G < TS+ 0 0 -92.9 14.8 171.6 136.5 70.4 69.6 43 -1.5 0 0.0 0 0.0 0 0.0 11 65
47 A 59 LYS K g < T + 0 0 -60.2 144.2 -174.3 158.9 25.0 86.5 44 -1.4 0 0.0 0 0.0 0 0.0 9 54
48 A 61 GLY G - 0 0 -156.4 173.4 172.3 -98.6 55.3 173.0 0 0.0 0 0.0 0 0.0 0 0.0 9 40
49 A 62 ARG R S S S+ 0 0 -67.8 -42.1 -174.9 12.0 110.4 18.2 21 -2.0 0 0.0 0 0.0 0 0.0 8 30
50 A 63 GLU E E E BC - 21 0 -147.7 128.3 -176.8 -160.6 68.3 177.1 21 -1.8 21 -2.9 0 0.0 0 0.0 8 37
51 A 64 ILE I E E BC - 20 0 -117.1 122.4 168.2 -172.1 3.7 165.6 0 0.0 72 -2.6 0 0.0 0 0.0 11 52
52 A 65 THR T E E BCF - 19 71 -111.3 124.7 -178.8 -154.9 12.8 161.9 19 -2.5 19 -3.1 0 0.0 0 0.0 11 52
53 A 66 VAL V E E BCF - 18 70 -101.0 131.3 167.9 -161.9 3.8 159.0 70 -2.6 70 -3.1 0 0.0 0 0.0 12 67
54 A 67 ILE I E E BCF - 17 69 -113.1 114.4 178.3 -176.4 11.8 167.5 17 -2.3 17 -2.6 0 0.0 0 0.0 13 66
55 A 68 LEU L E E B F + 0 68 -99.3 165.1 175.8 33.8 62.0 132.5 68 -1.8 68 -1.7 0 0.0 0 0.0 14 67
56 A 69 GLY G S S S+ 0 0 65.5 25.1 -176.8 140.2 87.2 54.7 0 0.0 0 0.0 0 0.0 0 0.0 13 52
57 A 70 ALA A + 0 0 -101.8 159.6 165.8 158.2 29.3 121.6 0 0.0 0 0.0 0 0.0 0 0.0 14 53
58 A 71 HIS H S S S+ 0 0 -128.3 -63.6 170.8 28.7 87.5 62.6 0 0.0 141 -0.8 0 0.0 60 -0.6 8 47
59 A 72 ASP D B B B > TS- 140 0 -99.1 107.1 -171.2 -163.9 71.1 145.5 0 0.0 62 -0.9 0 0.0 0 0.0 9 43
60 A 73 VAL V T T 3 TS+ 0 0 -76.0 2.6 179.6 64.0 83.2 64.3 139 -2.3 0 0.0 58 -0.6 0 0.0 8 42
61 A 74 ARG R T T 3 TS+ 0 0 -106.7 3.1 170.1 69.3 94.4 46.4 0 0.0 0 0.0 0 0.0 0 0.0 5 27
62 A 75 LYS K S t < TS- 0 0 -112.1 150.5 -175.9 -120.1 86.9 123.1 59 -0.9 64 -1.1 0 0.0 0 0.0 5 22
63 A 76 ARG R - 0 0 -96.7 87.3 -170.9 -167.1 41.1 153.3 0 0.0 0 0.0 0 0.0 0 0.0 6 21
64 A 77 GLU E t > T - 0 0 -85.6 140.1 179.2 -126.5 29.1 138.7 62 -1.1 67 -1.6 0 0.0 0 0.0 7 26
65 A 78 SER S T T 3 TS+ 0 0 -44.7 -35.4 -167.1 56.8 108.2 55.2 0 0.0 0 0.0 0 0.0 0 0.0 4 24
66 A 79 THR T T T 3 TS+ 0 0 -84.2 -14.9 -173.6 114.4 83.7 58.8 0 0.0 0 0.0 0 0.0 0 0.0 9 34
67 A 80 GLN Q t < T - 0 0 -71.5 137.0 165.1 -173.3 41.3 112.0 64 -1.6 0 0.0 0 0.0 0 0.0 10 42
68 A 81 GLN Q E E BF - 55 0 -125.6 110.4 172.9 -163.1 7.6 150.7 55 -1.7 55 -1.8 0 0.0 0 0.0 8 48
69 A 82 LYS K E E BF + 54 0 -90.8 115.2 -176.5 171.6 19.4 132.6 0 0.0 0 0.0 0 0.0 0 0.0 8 48
70 A 83 ILE I E E BF - 53 0 -127.8 133.5 170.9 -127.5 27.9 176.7 53 -3.1 53 -2.6 0 0.0 0 0.0 11 42
71 A 84 LYS K E E BF - 52 0 -78.2 147.8 172.8 -118.6 25.1 124.6 0 0.0 96 -2.7 0 0.0 73 -0.6 10 37
72 A 85 VAL V E E BG - 95 0 -83.8 127.0 172.0 -173.0 21.9 140.0 51 -2.6 0 0.0 0 0.0 0 0.0 13 47
73 A 86 GLU E E E B* S+ 0 0 -75.4 -58.9 -177.1 24.4 72.0 29.0 94 -1.4 0 0.0 71 -0.6 0 0.0 8 34
74 A 87 LYS K E E BG - 94 0 -120.8 147.0 168.2 -159.0 56.3 168.9 94 -2.0 94 -2.9 0 0.0 76 -0.5 8 35
75 A 88 GLN Q E E BG - 93 0 -113.2 105.8 -174.7 -171.7 16.5 156.9 0 0.0 77 -0.7 0 0.0 0 0.0 10 46
76 A 89 ILE I E E BG - 92 0 -112.0 101.4 -178.2 -168.8 4.0 151.3 92 -3.0 92 -2.9 74 -0.5 0 0.0 8 42
77 A 90 ILE I E E BG - 91 0 -89.7 135.4 -173.8 -90.4 37.5 128.2 75 -0.7 0 0.0 0 0.0 0 0.0 9 45
78 A 91 HIS H e > T - 0 0 -54.8 136.9 -170.9 -121.0 36.4 107.3 90 -2.0 81 -1.9 0 0.0 0 0.0 10 44
79 A 92 GLU E T T 3 TS+ 0 0 -62.5 -9.1 177.3 41.9 108.1 47.9 0 0.0 0 0.0 0 0.0 0 0.0 4 28
80 A 93 SER S T T 3 TS+ 0 0 -122.4 15.9 176.6 137.3 73.3 78.3 0 0.0 0 0.0 0 0.0 0 0.0 6 25
81 A 94 TYR Y t < T - 0 0 -52.4 103.0 -177.2 -167.2 35.9 114.0 78 -1.9 0 0.0 0 0.0 0 0.0 12 34
82 A 95 ASN N - 0 0 -96.8 176.3 178.2 -133.1 20.9 126.1 87 -1.6 0 0.0 0 0.0 0 0.0 8 26
83 A 96 SER S S S S+ 0 0 -125.9 57.0 169.5 40.1 94.4 104.1 0 0.0 0 0.0 0 0.0 0 0.0 6 21
84 A 97 VAL V S S S+ 0 0 -153.7 -57.8 167.2 39.4 118.1 77.6 0 0.0 0 0.0 0 0.0 0 0.0 5 18
85 A 98 PRO P S S S- 0 0 -65.7 -9.2 -172.4 -138.6 97.6 61.0 0 0.0 0 0.0 0 0.0 0 0.0 5 31
86 A 99 ASN N + 0 0 49.5 22.3 177.5 161.0 47.6 46.8 0 0.0 0 0.0 0 0.0 0 0.0 8 40
87 A 100 LEU L + 0 0 -71.6 148.6 178.3 22.6 49.5 116.8 0 0.0 82 -1.6 0 0.0 0 0.0 10 43
88 A 101 HIS H S S S+ 0 0 62.8 44.1 -176.3 176.4 73.2 21.1 0 0.0 90 -1.6 0 0.0 0 0.0 11 49
89 A 102 ASP D + 0 0 -81.6 71.3 -172.0 113.6 34.0 129.7 0 0.0 0 0.0 0 0.0 0 0.0 12 59
90 A 103 ILE I e - 0 0 -149.7 136.5 -174.4 -177.6 38.8 170.1 88 -1.6 78 -2.0 0 0.0 0 0.0 15 67
91 A 104 MET M E E BEG - 42 77 -142.0 138.2 163.3 -140.3 18.5 163.0 42 -2.1 42 -1.4 0 0.0 0 0.0 12 66
92 A 105 LEU L E E BEG - 41 76 -93.0 129.5 167.0 -154.5 13.3 137.7 76 -2.9 76 -3.0 0 0.0 94 -0.8 13 62
93 A 106 LEU L E E BEG - 40 75 -96.3 115.4 166.7 -154.4 4.9 146.4 40 -2.9 40 -1.7 0 0.0 95 -0.7 13 62
94 A 107 LYS K E E BEG - 39 74 -83.7 119.1 174.3 -135.9 21.4 136.4 74 -2.9 74 -2.0 92 -0.8 73 -1.4 12 48
95 A 108 LEU L E E B G - 0 72 -71.5 150.3 173.4 -129.8 9.3 116.5 38 -3.3 0 0.0 93 -0.7 0 0.0 13 41
96 A 109 GLU E S e S+ 0 0 -56.4 -48.7 178.1 16.1 95.9 30.7 71 -2.7 0 0.0 0 0.0 0 0.0 9 30
97 A 110 LYS K S S S- 0 0 -114.0 162.8 153.6 -101.7 90.6 160.4 0 0.0 0 0.0 0 0.0 0 0.0 7 26
98 A 111 LYS K - 0 0 -80.5 142.9 176.2 -117.1 43.3 118.7 0 0.0 0 0.0 0 0.0 0 0.0 7 35
99 A 112 VAL V - 0 0 -68.3 154.3 162.4 -116.3 20.0 121.8 37 -2.3 101 -0.5 0 0.0 0 0.0 8 41
100 A 113 GLU E - 0 0 -90.8 119.3 178.8 -131.1 29.6 139.0 0 0.0 0 0.0 0 0.0 0 0.0 6 33
101 A 114 LEU L + 0 0 -75.3 118.8 178.9 154.8 42.8 130.3 99 -0.5 0 0.0 0 0.0 0 0.0 8 35
102 A 115 THR T B B C > T - 105 0 -129.5 174.8 166.5 -81.7 61.4 148.7 105 -2.3 105 -1.4 0 0.0 0 0.0 6 28
103 A 116 PRO P T T 3 TS+ 0 0 -42.4 -38.8 177.1 37.2 132.8 20.6 0 0.0 0 0.0 0 0.0 0 0.0 6 27
104 A 117 ALA A T T 3 TS+ 0 0 -94.3 -11.8 -176.0 50.8 117.1 59.2 0 0.0 0 0.0 0 0.0 0 0.0 11 38
105 A 118 VAL V B B C < TS+ 102 0 -133.5 108.0 178.8 125.8 70.4 153.1 102 -1.4 102 -2.3 0 0.0 0 0.0 13 42
106 A 119 ASN N - 0 0 -156.5 176.0 -163.0 -82.0 50.3 155.1 13 -0.7 0 0.0 0 0.0 0 0.0 10 42
107 A 120 VAL V - 0 0 -92.8 155.5 174.0 -138.8 23.5 113.9 0 0.0 0 0.0 0 0.0 0 0.0 11 41
108 A 121 VAL V - 0 0 -106.4 137.1 170.7 -113.0 30.7 153.9 34 -2.0 0 0.0 0 0.0 0 0.0 11 52
109 A 122 PRO P - 0 0 -59.5 147.3 168.3 -137.9 22.5 120.5 0 0.0 192 -2.6 0 0.0 0 0.0 8 39
110 A 123 LEU L - 0 0 -100.6 148.8 179.3 -109.2 25.0 120.2 0 0.0 0 0.0 0 0.0 0 0.0 11 48
111 A 124 PRO P - 0 0 -63.9 171.1 163.9 -101.9 34.5 115.2 0 0.0 0 0.0 0 0.0 0 0.0 12 38
112 A 125 SER S t > T - 0 0 -89.9 151.7 -173.0 -108.4 36.2 121.0 0 0.0 115 -2.4 0 0.0 0 0.0 7 27
113 A 126 PRO P T T 3 TS+ 0 0 -59.2 -15.0 173.7 53.2 122.9 50.1 0 0.0 0 0.0 0 0.0 0 0.0 10 26
114 A 127 SER S T T 3 TS+ 0 0 -92.6 -7.6 -179.7 101.6 84.3 80.8 0 0.0 116 -1.1 0 0.0 0 0.0 6 21
115 A 128 ASP D t < T + 0 0 -86.2 90.4 161.4 175.3 49.0 126.5 112 -2.4 0 0.0 0 0.0 0 0.0 7 30
116 A 129 PHE F - 0 0 -75.5 145.3 165.9 -127.9 28.2 120.5 114 -1.1 118 -0.6 0 0.0 0 0.0 6 41
117 A 130 ILE I - 0 0 -95.6 131.2 173.0 -135.3 25.6 144.5 0 0.0 0 0.0 0 0.0 0 0.0 8 48
118 A 131 HIS H t > T - 0 0 -67.0 152.3 153.8 -94.9 24.7 122.8 116 -0.6 121 -1.9 0 0.0 0 0.0 7 39
119 A 132 PRO P T T 3 TS+ 0 0 -59.2 131.3 178.9 38.4 111.1 97.3 0 0.0 0 0.0 0 0.0 0 0.0 8 35
120 A 133 GLY G T T 3 TS+ 0 0 97.6 -1.4 169.8 135.7 79.6 80.4 148 -3.4 0 0.0 0 0.0 0 0.0 8 30
121 A 134 ALA A e < T - 0 0 -71.5 143.2 172.4 -128.0 53.3 108.7 118 -1.9 148 -2.6 0 0.0 0 0.0 9 33
122 A 135 MET M E E AH + 147 0 -98.2 122.8 -167.8 173.6 37.2 142.3 0 0.0 0 0.0 0 0.0 0 0.0 9 37
123 A 136 CYS C E E AH - 146 0 -127.5 162.5 179.2 -125.6 26.3 161.7 146 -2.3 146 -2.7 0 0.0 0 0.0 12 49
124 A 137 TRP W E E AHI - 145 187 -121.1 136.5 179.4 -170.8 16.3 157.2 187 -2.6 187 -3.7 0 0.0 0 0.0 12 61
125 A 138 ALA A E E AHI - 144 186 -119.7 130.9 179.4 -168.3 9.7 168.5 144 -2.1 144 -2.1 0 0.0 0 0.0 13 76
126 A 139 ALA A E E AH + 143 0 -126.9 155.3 -178.3 130.8 16.4 154.4 185 -1.0 0 0.0 0 0.0 0 0.0 14 76
127 A 140 GLY G E E AH - 142 0 -177.4 175.9 178.2 -117.7 54.5 165.3 142 -3.0 142 -1.8 0 0.0 0 0.0 13 77
128 A 141 TRP W S S S+ 0 0 -114.8 15.9 -177.8 118.1 73.7 82.4 0 0.0 138 -2.0 0 0.0 0 0.0 16 64
129 A 142 GLY G S e S- 0 0 -81.5 -172.6 -174.2 -43.9 72.6 83.4 0 0.0 138 -0.6 0 0.0 0 0.0 16 59
130 A 143 LYS K E E CJ - 137 0 -57.7 141.3 -177.9 -151.9 36.9 105.6 179 -3.1 0 0.0 0 0.0 0 0.0 16 48
131 A 144 THR T E E C* S+ 0 0 -99.4 7.5 173.2 8.8 79.4 69.3 136 -1.2 0 0.0 0 0.0 0 0.0 12 40
132 A 145 GLY G E E CJ > TS- 135 0 -173.5 167.0 -175.9 -93.7 85.8 164.1 135 -0.6 135 -1.1 0 0.0 0 0.0 9 36
133 A 146 VAL V T T 3 TS+ 0 0 -58.0 -35.8 178.5 21.3 130.3 33.1 0 0.0 0 0.0 0 0.0 0 0.0 9 30
134 A 147 ARG R T T 3 TS+ 0 0 -113.5 11.8 -179.0 101.7 107.8 95.2 0 0.0 0 0.0 0 0.0 0 0.0 5 22
135 A 148 ASP D E E CJ < TS- 132 0 -108.0 151.6 -170.0 -107.1 72.6 146.4 132 -1.1 132 -0.6 0 0.0 0 0.0 7 25
136 A 149 PRO P E E C* - 0 0 -72.5 165.5 175.0 -83.4 39.3 99.3 0 0.0 131 -1.2 0 0.0 0 0.0 8 26
137 A 150 THR T E E CJ - 130 0 -64.2 158.6 -175.3 -109.0 49.6 99.1 0 0.0 0 0.0 0 0.0 0 0.0 10 42
138 A 152 SER S e - 0 0 -98.7 138.2 177.8 -154.7 12.6 145.3 128 -2.0 0 0.0 129 -0.6 0 0.0 10 46
139 A 153 TYR Y S S S+ 0 0 -79.3 -22.3 179.0 50.4 84.7 44.1 0 0.0 60 -2.3 0 0.0 0 0.0 8 45
140 A 154 THR T B B B S- 59 0 -121.7 144.3 -175.4 -90.4 101.4 153.6 0 0.0 0 0.0 0 0.0 0 0.0 9 47
141 A 155 LEU L e - 0 0 -59.0 132.1 -179.7 -171.2 42.9 100.2 58 -0.8 7 -1.5 0 0.0 0 0.0 13 61
142 A 156 ARG R E E AAH - 6 127 -121.1 158.8 -176.3 -164.0 1.3 152.5 127 -1.8 127 -3.0 0 0.0 0 0.0 13 56
143 A 157 GLU E E E AAH - 5 126 -149.1 153.8 -177.5 -167.5 4.9 167.3 5 -2.2 5 -2.1 0 0.0 0 0.0 13 60
144 A 158 VAL V E E A H - 0 125 -147.5 143.2 176.7 -121.7 23.2 170.8 125 -2.1 125 -2.1 0 0.0 0 0.0 15 54
145 A 159 GLU E E E A H - 0 124 -91.6 123.1 -169.6 -176.1 36.0 135.5 0 0.0 0 0.0 0 0.0 0 0.0 10 50
146 A 160 LEU L E E A H - 0 123 -126.8 149.8 -169.4 -128.7 20.8 154.1 123 -2.7 123 -2.3 0 0.0 0 0.0 13 58
147 A 161 ARG R E E A H - 0 122 -112.0 123.5 -178.6 -127.7 19.5 153.0 0 0.0 169 -3.6 0 0.0 0 0.0 12 49
148 A 162 ILE I E E AK - 168 0 -75.0 127.6 -175.8 -151.9 34.5 131.5 121 -2.6 120 -3.4 0 0.0 0 0.0 16 51
149 A 163 MET M E E AK - 167 0 -98.4 159.7 168.1 -99.4 16.6 137.4 167 -3.0 167 -0.6 0 0.0 0 0.0 15 51
150 A 164 ASP D g > T - 0 0 -70.1 144.1 175.5 -107.6 41.8 111.5 0 0.0 153 -2.1 0 0.0 0 0.0 9 38
151 A 165 GLU E G G > > TS+ 0 0 -37.5 -44.8 -174.9 69.2 116.4 29.2 0 0.0 154 -3.2 0 0.0 155 -0.7 10 37
152 A 166 LYS K G G 4 3>TS+ 0 0 -53.0 -25.6 -170.3 66.6 86.6 60.2 0 0.0 157 -0.6 0 0.0 0 0.0 8 30
153 A 167 ALA A G G 4 <5TS+ 0 0 -78.5 -15.1 -179.8 25.2 114.8 40.8 150 -2.1 0 0.0 0 0.0 0 0.0 11 35
154 A 168 CYS C T g 4 <>TS+ 0 0 -125.5 -2.0 -178.1 49.9 121.8 68.3 151 -3.2 159 -2.4 0 0.0 0 0.0 13 38
155 A 169 VAL V T T < >5TS+ 0 0 -99.8 -72.7 179.8 23.1 120.4 35.7 151 -0.7 158 -1.8 0 0.0 0 0.0 10 28
156 A 170 ASP D T T 35TS+ 0 0 -71.8 -19.4 165.4 54.9 128.1 34.1 0 0.0 0 0.0 0 0.0 0 0.0 7 16
157 A 170A TYR Y T T 3 > T - 0 0 142.3 90.9 -163.7 -155.9 22.9 85.1 0 0.0 164 -0.9 0 0.0 165 -0.9 7 38
162 A 174 TYR Y T T 4 3 TS+ 0 0 -63.0 -27.1 -173.0 61.5 79.7 48.8 0 0.0 0 0.0 0 0.0 0 0.0 7 42
163 A 175 LYS K T T 4 3 TS+ 0 0 -72.7 -34.8 -169.0 23.4 120.3 37.3 0 0.0 0 0.0 0 0.0 0 0.0 6 37
164 A 176 PHE F T e 4 < TS+ 0 0 -109.7 -14.3 -172.7 58.5 121.5 66.7 161 -0.9 211 -2.1 0 0.0 0 0.0 12 53
165 A 180 GLN Q E E T - 0 0 -80.2 143.0 174.9 -129.8 20.5 124.9 0 0.0 173 -1.7 0 0.0 0 0.0 11 40
171 A 185 PRO P T T 3 TS+ 0 0 -71.1 7.3 177.3 84.3 100.2 71.5 0 0.0 0 0.0 0 0.0 0 0.0 8 34
172 A 186 THR T T T 3 TS+ 0 0 -82.1 -20.2 -175.8 31.0 96.6 54.4 0 0.0 0 0.0 0 0.0 0 0.0 4 22
173 A 187 THR T S t < TS- 0 0 -137.8 154.9 167.0 -127.9 72.1 169.8 170 -1.7 0 0.0 0 0.0 0 0.0 7 27
174 A 188 LEU L + 0 0 -88.1 24.3 174.5 136.4 62.6 73.2 0 0.0 0 0.0 0 0.0 0 0.0 10 34
175 A 188A ARG R + 0 0 -76.8 126.4 -168.6 145.1 28.0 111.7 0 0.0 0 0.0 0 0.0 0 0.0 13 50
176 A 189 ALA A B B A - 2 0 -159.6 149.4 160.0 -118.9 52.4 169.4 2 -1.9 2 -3.2 0 0.0 0 0.0 14 64
177 A 190 ALA A + 0 0 -85.1 136.0 -175.7 175.2 47.7 136.6 0 0.0 0 0.0 0 0.0 0 0.0 15 72
178 A 191 PHE F t > > T - 0 0 -126.5 -155.6 -179.9 -21.6 34.9 113.4 0 0.0 181 -1.8 0 0.0 182 -0.6 14 63
179 A 192 MET M T T 4 3 TS+ 0 0 -63.3 119.0 -174.7 20.6 127.9 121.1 0 0.0 130 -3.1 0 0.0 0 0.0 8 58
180 A 193 GLY G T T 4 3 TS+ 0 0 102.3 -15.2 -179.0 86.0 104.3 85.3 0 0.0 0 0.0 0 0.0 0 0.0 13 63
181 A 194 ASP D T T 4 X T + 0 0 -90.3 -11.7 175.5 125.1 60.9 50.5 178 -1.8 184 -2.5 0 0.0 0 0.0 16 75
182 A 195 SER S T T < 3 TS+ 0 0 -49.3 134.7 177.5 24.8 70.0 95.9 178 -0.6 31 -3.7 0 0.0 0 0.0 18 68
183 A 196 GLY G T T 3 TS+ 0 0 87.9 -5.9 172.1 130.9 93.6 77.4 196 -2.3 0 0.0 0 0.0 0 0.0 15 77
184 A 197 GLY G e < T - 0 0 -75.0 158.5 -175.7 -94.6 59.7 109.9 181 -2.5 196 -2.4 0 0.0 0 0.0 17 81
185 A 198 PRO P E E A M - 0 195 -73.2 147.7 158.2 -148.6 15.4 115.8 0 0.0 126 -1.0 0 0.0 187 -0.6 15 81
186 A 199 LEU L E E AIM - 125 194 -108.1 107.8 -177.7 -154.1 25.4 168.3 194 -2.3 193 -2.5 0 0.0 194 -1.2 14 73
187 A 200 LEU L E E AIM + 124 192 -92.2 114.6 174.1 172.4 19.9 147.3 124 -3.7 124 -2.6 185 -0.6 0 0.0 12 61
188 A 201 CYS C E E A M> TS- 0 191 -123.3 116.7 179.6 -19.7 71.3 167.4 191 -2.6 191 -0.7 0 0.0 0 0.0 12 46
189 A 204 ALA A T T 3 TS- 0 0 56.3 47.0 175.1 -48.5 126.7 32.0 0 0.0 0 0.0 0 0.0 0 0.0 5 32
190 A 205 GLY G T T 3 TS+ 0 0 92.9 -19.5 -161.0 99.0 120.6 56.9 0 0.0 0 0.0 0 0.0 0 0.0 7 36
191 A 206 VAL V E E AM < TS- 188 0 -120.2 143.1 -179.7 -114.1 78.2 163.4 188 -0.7 188 -2.6 0 0.0 193 -1.0 10 44
192 A 209 ALA A E E AM + 187 0 -84.1 101.7 -174.3 157.6 44.1 135.4 109 -2.6 0 0.0 0 0.0 0 0.0 14 64
193 A 210 HIS H E E A* + 0 0 -94.2 -20.4 -172.4 29.6 57.1 57.2 186 -2.5 212 -1.8 191 -1.0 0 0.0 14 65
194 A 211 GLY G E E AMN - 186 211 -141.5 160.5 169.0 -150.3 53.2 168.7 186 -1.2 186 -2.3 0 0.0 0 0.0 12 81
195 A 212 ILE I E E AMN - 185 210 -132.4 131.1 177.1 -109.7 38.4 174.8 210 -1.1 210 -2.5 0 0.0 0 0.0 17 80
196 A 213 VAL V E E A N + 0 209 -58.7 116.2 -176.8 154.4 52.3 115.3 184 -2.4 183 -2.3 0 0.0 0 0.0 15 75
197 A 214 SER S E E A * - 0 0 -111.0 -73.0 -176.7 -38.2 47.9 51.4 208 -1.5 0 0.0 0 0.0 0 0.0 12 70
198 A 215 TYR Y E E A N + 0 208 -152.3 172.7 172.9 162.7 45.4 156.3 208 -2.1 208 -3.4 0 0.0 0 0.0 8 62
199 A 216 GLY G - 0 0 -157.7 -148.1 173.9 -36.9 49.9 143.8 0 0.0 0 0.0 0 0.0 0 0.0 10 57
200 A 221 HIS H t > T - 0 0 -90.1 141.8 178.4 -120.8 50.7 127.4 0 0.0 203 -2.4 0 0.0 0 0.0 8 39
201 A 221A PRO P T T 3 TS+ 0 0 -59.8 -21.7 169.3 52.9 117.8 46.0 0 0.0 0 0.0 0 0.0 0 0.0 6 30
202 A 222 ASP D T T 3 TS- 0 0 -85.9 -3.4 -175.7 -126.8 112.3 68.5 0 0.0 0 0.0 0 0.0 0 0.0 5 28
203 A 223 ALA A t < T + 0 0 58.3 24.7 173.7 158.1 53.7 48.2 200 -2.4 0 0.0 0 0.0 0 0.0 12 44
204 A 224 LYS K - 0 0 -77.6 124.6 -178.2 -73.8 42.2 129.4 0 0.0 0 0.0 0 0.0 0 0.0 11 39
205 A 224A PRO P S S S+ 0 0 -62.0 151.8 7.1 62.5 97.0 112.2 0 0.0 0 0.0 0 0.0 0 0.0 14 49
206 A 225 PRO P + 0 0 -87.8 163.3 174.3 178.0 65.3 69.8 0 0.0 0 0.0 0 0.0 0 0.0 13 55
207 A 226 ALA A E E AL - 168 0 -122.1 173.2 -176.3 -108.1 26.8 133.9 168 -2.6 168 -2.6 0 0.0 0 0.0 14 68
208 A 227 ILE I E E ALN + 167 198 -111.9 125.1 178.6 177.8 29.2 158.5 198 -3.4 198 -2.1 0 0.0 197 -1.5 13 69
209 A 228 PHE F E E ALN - 166 196 -117.3 144.7 172.9 -106.3 37.5 162.6 166 -1.8 166 -3.3 0 0.0 0 0.0 14 79
210 A 229 THR T E E ALN - 165 195 -69.7 131.6 172.8 -121.1 34.6 125.3 195 -2.5 195 -1.1 0 0.0 212 -0.8 14 73
211 A 230 ARG R E E >A N> T - 0 194 -74.3 103.6 -174.9 -163.7 23.0 125.2 164 -2.1 214 -0.7 0 0.0 215 -0.7 13 65
212 A 231 VAL V H H > > TS+ 0 0 -61.0 -37.6 177.1 66.4 79.9 30.8 193 -1.8 215 -1.4 210 -0.8 216 -0.6 13 65
213 A 232 SER S H H 4 > TS+ 0 0 -44.8 -50.2 -177.3 52.6 98.9 35.8 0 0.0 216 -0.8 0 0.0 0 0.0 13 44
214 A 233 THR T H H 4 < TS+ 0 0 -63.4 -32.1 -175.8 47.1 110.0 36.3 211 -0.7 0 0.0 0 0.0 0 0.0 9 42
215 A 234 TYR Y H H X < TS+ 0 0 -96.1 -4.9 176.2 97.3 80.7 64.8 212 -1.4 219 -2.6 211 -0.7 0 0.0 10 51
216 A 235 VAL V H H X < TS+ 0 0 -49.0 -49.9 -178.4 54.6 81.4 32.6 213 -0.8 220 -3.2 212 -0.6 0 0.0 12 46
217 A 236 PRO P H H > TS+ 0 0 -61.8 -27.0 170.9 45.5 112.2 21.3 0 0.0 221 -1.6 0 0.0 0 0.0 8 28
218 A 237 TRP W H H > TS+ 0 0 -72.8 -51.0 174.4 51.7 111.8 18.5 0 0.0 222 -2.7 0 0.0 0 0.0 7 37
219 A 238 ILE I H H X TS+ 0 0 -51.1 -48.6 180.0 47.1 111.3 21.0 215 -2.6 223 -2.3 0 0.0 0 0.0 9 49
220 A 239 ASN N H H X TS+ 0 0 -69.6 -31.7 179.3 51.0 111.1 29.5 216 -3.2 224 -1.9 0 0.0 0 0.0 8 31
221 A 240 ALA A H H < TS+ 0 0 -72.6 -28.3 178.9 43.5 115.1 22.4 217 -1.6 0 0.0 0 0.0 0 0.0 7 24
222 A 241 VAL V H H < TS+ 0 0 -80.0 -37.7 -172.1 34.8 122.1 31.1 218 -2.7 0 0.0 0 0.0 0 0.0 6 27
223 A 242 ILE I H H < T 0 0 -81.3 -49.7 -170.2 999.9 999.9 24.1 219 -2.3 0 0.0 0 0.0 0 0.0 6 32
224 A 243 ASN N h < T 0 0 -87.3 999.9 999.9 999.9 999.9 26.4 220 -1.9 0 0.0 0 0.0 0 0.0 4 19
3rp2A.pdb
3RP2 SERINE PROTEINASE RAT MAST CELL PROTEASE /II$ (/RMCPII$) RAT (RATTUS $RATTUS) ATYPICAL MAST CELLS FROM THE
author author
Kabs/Sand BS EE TTS TTEEEEEEE TTS EEEEEEEESSSSEEEE GGG SEEEEEES SBTTS TT EEEEEEEEEE TT SSS S EEEEESS Kabs/Sand
chirality ++------+++++--------+-+-+-+-+--+--++--+--++++-+-----++++-++---++--+---+-----++--++-++++------+---- chirality
bends S SSS SS SSS SSSS SSS S S SSSSS SS S SS SSS S SS bends
turns TTTTTTTT TTTT TTTTT TTTT TTTT TTTT turns
5-turns 5-turns
3-turns >33<>33< >33< >>3<< >33< >33< >33< 3-turns
bridge-2 CCCCC DD EEEE FFFF GGGGG bridge-2
bridge-1 A AA BBBBBBB BBBBBBB DD CCCCC B FFFFG*GGGG EEEE bridge-1
sheets AA BBBBBBB BBBBBBBB BBBB BBBBBB BBBBBBBBBB BBBBB sheets
4-turns 4-turns
summary BS EEetTTttTeEEEEEEEeTTteEEEEEEEEeSSeEEEEgGGGg SEEEEEES SBTTt tTTtEEEEEEEEEEeTTt SSS S eEEEEEeS summary
sequence IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGREITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVE sequence
10 20 30 40 50 60 70 80 90 100
author author
Kabs/Sand BTTB TT TT EEEEEESSEEETTEEE SB EEEEEEEE GGGTTTTT TTTEEEE TTS B TTTTT EEEETTEEEEEEEE Kabs/Sand
chirality +-+++-------+++---++-+---+-+--+-++----+-----------++++++--+--+++---+--++-++-+-+++++---+--+-++--+-+-- chirality
bends SSS SS SS SS SSSSS SS SSSSSSSS SSS SSS SS SS SSSS bends
turns TTTT TTTT TTTT TTTT TTTTTTTTTT TTTTT TTTT TTTTTTT TTTT T turns
5-turns >5>55<5< 5-turns
3-turns >33< >33< >33< >33< >>3<<>33< >33< >33< >33X33< >33< > 3-turns
bridge-2 II HHHHHH LLLL MMMM NNN*N bridge-2
bridge-1 C C HHHHHH J*J J*J B AA KK KK A II MM*MM bridge-1
sheets AAAAAA CCC CCC AAAAAAAA AAAA AAAA AAAAAAAA sheets
4-turns >444< >444< >444< 4-turns
summary BTTB tTTt tTTeEEEEEESeEEETTEEEeSBeEEEEEEEEgGGGgTTTTt tTTeEEEEetTTt B tTTTTTeEEEETTEEEEEEEE t summary
sequence LTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAGVAHGIVSYGH sequence
110 120 130 140 150 160 170 180 190 200
author author
Kabs/Sand TT S EEEEEHHHHHHHHHHHH Kabs/Sand
chirality +-+-++-+---+++++++++++ chirality
bends SS S SSSSSSSSSSS bends
turns TTT TTTTTTTTTTTTTT turns
5-turns 5-turns
3-turns 33< >>><<< 3-turns
bridge-2 NNNN bridge-2
bridge-1 LLLL bridge-1
sheets AAAAA sheets
4-turns >>44XX>>XX<<<< 4-turns
summary TTt S EEEEEHHHHHHHHHHHHh summary
sequence PDAKPPAIFTRVSTYVPWINAVIN sequence
210 220