Secondary structure calculation program - copyright by David Keith Smith, 1989
2ezk-.pdb
2EZK DNA-BINDING PROTEIN MOL_ID: 1; MOL_ID: 1;
Sequence length - 93
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 76 MET M 0 0 999.9 139.4 168.4 999.9 999.9 999.9 0 0.0 3 -3.1 0 0.0 0 0.0 2 21
2 77 ILE I - 0 0 -75.6 83.1 -172.6 -172.3 999.9 125.8 0 0.0 0 0.0 0 0.0 0 0.0 5 34
3 78 ALA A - 0 0 -51.3 -116.5 176.1 -94.6 29.1 41.8 1 -3.1 0 0.0 0 0.0 0 0.0 4 18
4 79 ARG R - 0 0 -164.0 135.5 -169.5 -143.2 49.4 153.6 0 0.0 0 0.0 0 0.0 0 0.0 4 23
5 80 PRO P - 0 0 -105.1 -167.0 177.1 -72.5 29.6 108.5 0 0.0 7 -1.6 0 0.0 0 0.0 5 22
6 81 THR T t > T - 0 0 -82.5 87.8 -178.9 -161.6 42.8 132.6 0 0.0 8 -3.0 0 0.0 9 -0.8 5 18
7 82 LEU L T T 3 T + 0 0 -77.0 75.9 -175.8 96.9 65.5 117.7 5 -1.6 0 0.0 0 0.0 0 0.0 5 21
8 83 GLU E T T 3 T + 0 0 -129.5 -49.4 -177.5 58.6 64.2 54.0 6 -3.0 10 -1.0 0 0.0 0 0.0 4 14
9 84 ALA A S t < TS+ 0 0 -95.7 97.5 178.0 100.1 76.2 138.0 6 -0.8 0 0.0 0 0.0 0 0.0 5 16
10 85 HIS H - 0 0 -176.6 128.6 179.1 -149.7 56.4 140.2 8 -1.0 0 0.0 0 0.0 0 0.0 6 19
11 86 ASP D S S S+ 0 0 -76.2 -7.4 -177.8 60.7 92.3 56.4 0 0.0 0 0.0 0 0.0 0 0.0 4 14
12 87 TYR Y S S S- 0 0 -124.6 136.0 179.5 -125.1 86.2 166.4 0 0.0 14 -0.6 0 0.0 0 0.0 4 18
13 88 ASP D - 0 0 -81.2 118.9 -179.1 -168.1 18.4 131.5 0 0.0 0 0.0 0 0.0 0 0.0 7 22
14 89 ARG R h > >T + 0 0 -81.4 -13.7 -176.4 97.2 66.2 52.7 12 -0.6 18 -4.1 0 0.0 19 -0.7 7 31
15 90 GLU E H H > 5TS+ 0 0 -43.3 -44.2 176.1 45.7 92.3 19.0 0 0.0 19 -3.7 0 0.0 0 0.0 6 25
16 91 ALA A H H > 5TS+ 0 0 -60.1 -49.6 -179.9 42.3 117.7 17.2 0 0.0 20 -1.7 0 0.0 0 0.0 7 20
17 92 LEU L H H > 5TS+ 0 0 -65.0 -51.0 179.4 39.0 122.0 13.9 0 0.0 21 -1.5 0 0.0 0 0.0 9 32
18 93 TRP W H H X 5TS+ 0 0 -70.0 -31.3 178.8 60.2 110.0 29.0 14 -4.1 22 -3.2 0 0.0 0 0.0 9 35
19 94 SER S H H X TS+ 0 0 -63.0 -47.4 -178.8 51.3 110.8 18.9 17 -1.5 24 -1.0 0 0.0 0 0.0 10 34
22 97 ASP D H H < 3 TS+ 0 0 -58.6 -39.9 -179.3 42.8 115.0 24.4 18 -3.2 0 0.0 0 0.0 0 0.0 6 29
23 98 ASN N H H < 3 TS+ 0 0 -84.4 -4.9 179.8 108.1 93.8 56.5 19 -2.7 0 0.0 0 0.0 0 0.0 6 20
24 99 ALA A S h < < TS- 0 0 -69.3 156.0 -179.4 -100.0 80.2 108.9 21 -1.0 0 0.0 20 -0.7 0 0.0 9 25
25 100 SER S h > T - 0 0 -72.8 160.6 -179.6 -111.4 28.9 107.9 0 0.0 29 -1.8 0 0.0 0 0.0 6 21
26 101 ASP D H H > TS+ 0 0 -60.0 -40.0 -178.9 57.1 118.0 24.9 0 0.0 30 -2.5 0 0.0 0 0.0 6 21
27 102 SER S H H > TS+ 0 0 -60.2 -40.0 -178.8 50.0 105.7 25.7 0 0.0 31 -2.3 0 0.0 0 0.0 6 21
28 103 GLN Q H H > TS+ 0 0 -68.0 -43.4 179.6 45.0 112.4 20.3 0 0.0 32 -2.3 0 0.0 0 0.0 9 28
29 104 ARG R H H X TS+ 0 0 -65.1 -39.9 179.7 53.4 112.7 21.7 25 -1.8 33 -2.7 0 0.0 0 0.0 12 32
30 105 ARG R H H X TS+ 0 0 -60.0 -44.9 179.2 50.5 107.5 21.2 26 -2.5 34 -2.2 0 0.0 0 0.0 8 27
31 106 LEU L H H X TS+ 0 0 -60.1 -47.1 179.9 48.9 110.8 17.5 27 -2.3 35 -1.9 0 0.0 0 0.0 10 32
32 107 ALA A H H X TS+ 0 0 -59.9 -41.8 179.9 53.4 109.1 22.1 28 -2.3 36 -1.0 0 0.0 0 0.0 12 41
33 108 GLU E H H < TS+ 0 0 -60.9 -40.1 -178.8 52.5 106.8 24.8 29 -2.7 0 0.0 0 0.0 0 0.0 9 37
34 109 LYS K H H X TS+ 0 0 -64.4 -40.0 -178.5 43.9 112.3 25.5 30 -2.2 38 -0.5 0 0.0 0 0.0 8 35
35 110 TRP W H H X TS+ 0 0 -81.7 -9.2 -178.7 73.9 100.2 53.7 31 -1.9 39 -1.5 0 0.0 0 0.0 9 48
36 111 LEU L H H X TS+ 0 0 -72.8 -46.7 179.7 46.7 94.7 17.1 32 -1.0 40 -2.2 0 0.0 0 0.0 10 45
37 112 PRO P H H > TS+ 0 0 -65.6 -25.9 -179.6 52.5 112.5 36.6 0 0.0 41 -1.8 0 0.0 0 0.0 8 36
38 113 ALA A H H X TS+ 0 0 -77.0 -42.8 179.7 42.6 112.0 22.0 34 -0.5 42 -2.0 0 0.0 0 0.0 11 42
39 114 VAL V H H X TS+ 0 0 -68.5 -40.1 -178.7 48.7 117.0 24.3 35 -1.5 43 -1.6 0 0.0 0 0.0 10 52
40 115 GLN Q H H X TS+ 0 0 -67.1 -43.7 179.9 48.9 111.1 21.0 36 -2.2 44 -1.5 0 0.0 0 0.0 8 43
41 116 ALA A H H X TS+ 0 0 -63.2 -40.1 179.9 55.4 108.1 22.9 37 -1.8 45 -1.7 0 0.0 0 0.0 9 38
42 117 ALA A H H X TS+ 0 0 -60.0 -40.1 -179.2 57.1 102.0 25.0 38 -2.0 46 -2.4 0 0.0 0 0.0 11 45
43 118 ASP D H H X TS+ 0 0 -60.0 -41.1 179.3 52.0 104.5 22.0 39 -1.6 47 -2.2 0 0.0 0 0.0 8 38
44 119 GLU E H H X TS+ 0 0 -62.3 -40.1 -178.7 49.3 109.9 24.1 40 -1.5 48 -1.5 0 0.0 0 0.0 8 24
45 120 MET M H H < >TS+ 0 0 -68.4 -40.0 179.4 48.9 110.4 23.0 41 -1.7 50 -1.8 0 0.0 0 0.0 10 28
46 121 LEU L H H < >5TS+ 0 0 -66.1 -36.6 179.6 57.7 106.9 24.9 42 -2.4 49 -1.8 0 0.0 0 0.0 11 26
47 122 ASN N H H < 35TS+ 0 0 -60.1 -38.4 -179.5 55.4 101.2 26.1 43 -2.2 0 0.0 0 0.0 0 0.0 7 17
48 123 GLN Q T h < 35TS- 0 0 -74.7 1.0 178.5 -116.0 118.5 58.8 44 -1.5 0 0.0 0 0.0 0 0.0 6 17
49 124 GLY G T T <5T + 0 0 71.4 29.8 178.8 165.1 55.8 34.6 46 -1.8 0 0.0 0 0.0 0 0.0 6 16
50 125 ILE I t T - 0 0 -51.6 140.0 -179.5 -126.4 32.7 101.6 0 0.0 55 -3.3 0 0.0 0 0.0 7 20
52 127 THR T H H > TS+ 0 0 -58.9 -42.1 -179.5 53.4 109.6 22.3 0 0.0 56 -3.3 0 0.0 0 0.0 7 29
53 128 LYS K H H > TS+ 0 0 -58.3 -50.7 -179.1 40.7 114.4 14.7 0 0.0 57 -3.1 0 0.0 0 0.0 6 24
54 129 THR T H H > TS+ 0 0 -64.7 -42.7 179.8 51.7 115.8 21.6 0 0.0 58 -2.9 0 0.0 0 0.0 8 27
55 130 ALA A H H X TS+ 0 0 -60.0 -51.2 -179.7 36.5 117.9 15.1 51 -3.3 59 -2.0 0 0.0 0 0.0 12 33
56 131 PHE F H H X TS+ 0 0 -70.0 -40.1 -180.0 53.6 116.6 23.5 52 -3.3 60 -3.4 0 0.0 0 0.0 11 39
57 132 ALA A H H X TS+ 0 0 -60.2 -45.5 -180.0 47.5 110.1 18.5 53 -3.1 61 -2.4 0 0.0 0 0.0 9 28
58 133 THR T H H X TS+ 0 0 -61.5 -45.6 179.9 45.8 115.0 18.4 54 -2.9 62 -2.8 0 0.0 0 0.0 8 32
59 134 VAL V H H X TS+ 0 0 -63.9 -44.7 179.5 48.0 113.9 19.5 55 -2.0 63 -3.7 0 0.0 0 0.0 12 36
60 135 ALA A H H < TS+ 0 0 -65.3 -31.4 179.3 51.7 112.2 30.2 56 -3.4 0 0.0 0 0.0 0 0.0 11 33
61 136 GLY G H H < TS+ 0 0 -70.1 -50.0 179.6 33.9 118.9 14.8 57 -2.4 0 0.0 0 0.0 0 0.0 7 23
62 137 HIS H H H < TS+ 0 0 -71.0 -43.2 -179.5 47.9 124.5 21.7 58 -2.8 0 0.0 0 0.0 0 0.0 6 24
63 138 TYR Y S h < TS- 0 0 -100.3 137.5 179.5 -132.3 82.9 144.3 59 -3.7 65 -2.0 0 0.0 0 0.0 7 28
64 139 GLN Q + 0 0 -84.3 65.2 179.5 115.8 67.9 113.1 0 0.0 0 0.0 0 0.0 0 0.0 6 24
65 140 VAL V S S S- 0 0 -130.1 157.1 180.0 -95.1 75.0 156.8 63 -2.0 0 0.0 0 0.0 0 0.0 7 30
66 141 SER S h > T - 0 0 -72.4 129.6 179.1 -144.1 24.5 122.7 0 0.0 70 -2.5 0 0.0 0 0.0 7 26
67 142 ALA A H H > TS+ 0 0 -60.0 -40.0 -179.8 51.6 103.3 23.1 0 0.0 71 -2.2 0 0.0 0 0.0 10 30
68 143 SER S H H > TS+ 0 0 -64.8 -40.0 -179.4 49.6 109.3 24.9 0 0.0 72 -1.8 0 0.0 0 0.0 6 27
69 144 THR T H H > TS+ 0 0 -65.0 -50.0 -178.6 47.6 111.6 15.6 0 0.0 73 -2.0 0 0.0 0 0.0 8 33
70 145 LEU L H H X TS+ 0 0 -60.0 -43.0 -179.3 53.7 109.4 22.6 66 -2.5 74 -2.5 0 0.0 0 0.0 11 45
71 146 ARG R H H X TS+ 0 0 -60.0 -44.6 -179.2 50.1 107.7 19.2 67 -2.2 75 -1.8 0 0.0 0 0.0 9 37
72 147 ASP D H H X TS+ 0 0 -59.9 -43.1 -179.2 44.8 114.4 20.9 68 -1.8 76 -1.6 0 0.0 0 0.0 8 30
73 148 LYS K H H X TS+ 0 0 -69.9 -34.9 -178.5 61.3 105.8 30.2 69 -2.0 77 -2.3 0 0.0 0 0.0 8 43
74 149 TYR Y H H X TS+ 0 0 -60.0 -45.4 179.3 40.4 109.8 18.3 70 -2.5 78 -0.6 0 0.0 0 0.0 9 43
75 150 TYR Y H H X > TS+ 0 0 -70.0 -36.4 -178.6 57.6 112.4 27.6 71 -1.8 79 -0.6 0 0.0 78 -0.5 8 28
76 151 GLN Q H H < > TS+ 0 0 -62.9 -40.0 -179.0 45.2 107.6 25.6 72 -1.6 79 -0.6 0 0.0 0 0.0 8 31
77 152 VAL V H H < > TS+ 0 0 -80.0 -9.4 -179.8 85.7 92.4 51.0 73 -2.3 80 -1.0 0 0.0 0 0.0 11 34
78 153 GLN Q H H < < TS+ 0 0 -57.8 -40.0 -179.3 47.9 89.6 25.8 74 -0.6 0 0.0 75 -0.5 0 0.0 8 26
79 154 LYS K T h < < TS+ 0 0 -77.3 -11.3 -179.6 76.5 103.7 49.7 75 -0.6 0 0.0 76 -0.6 0 0.0 6 20
80 155 PHE F S t < TS- 0 0 -102.2 137.1 -179.7 -105.7 95.3 145.5 77 -1.0 0 0.0 0 0.0 0 0.0 9 30
81 156 ALA A h > > T - 0 0 -56.6 141.2 -179.1 -117.2 32.3 105.6 0 0.0 84 -1.1 0 0.0 85 -0.6 8 34
82 157 LYS K H H > > TS+ 0 0 -50.0 -49.0 -179.8 59.5 112.8 22.8 0 0.0 85 -2.4 0 0.0 86 -0.6 8 41
83 158 PRO P H H 4 3 TS+ 0 0 -51.4 -34.5 -179.3 45.8 108.3 31.2 0 0.0 0 0.0 0 0.0 0 0.0 7 37
84 159 ASP D H H > < TS+ 0 0 -88.3 -0.1 179.9 94.8 85.8 60.8 81 -1.1 88 -2.9 0 0.0 0 0.0 8 47
85 160 TRP W H H X < TS+ 0 0 -57.2 -40.0 -179.7 55.7 81.4 22.7 82 -2.4 89 -2.2 81 -0.6 0 0.0 11 46
86 161 ALA A H H X TS+ 0 0 -59.9 -40.0 179.7 43.2 111.3 22.8 82 -0.6 90 -0.9 0 0.0 0 0.0 13 49
87 162 ALA A H H > TS+ 0 0 -72.6 -39.0 -179.5 57.3 109.5 25.9 0 0.0 91 -1.4 0 0.0 0 0.0 12 48
88 163 ALA A H H < TS+ 0 0 -60.2 -37.8 -179.2 53.9 103.2 26.8 84 -2.9 0 0.0 0 0.0 0 0.0 10 44
89 164 LEU L H H < TS+ 0 0 -69.0 -26.9 178.7 60.5 101.2 33.1 85 -2.2 0 0.0 0 0.0 0 0.0 10 47
90 165 VAL V H H < TS+ 0 0 -64.9 -39.9 -178.3 71.3 92.7 23.4 86 -0.9 92 -1.7 0 0.0 0 0.0 12 38
91 166 ASP D S h < TS+ 0 0 -80.6 89.6 178.1 165.6 70.0 124.3 87 -1.4 0 0.0 0 0.0 0 0.0 6 34
92 167 GLY G 0 0 -95.7 168.3 179.7 999.9 999.9 121.6 90 -1.7 0 0.0 0 0.0 0 0.0 5 29
93 168 ARG R 0 0 -87.7 999.9 999.9 999.9 999.9 36.6 0 0.0 0 0.0 0 0.0 0 0.0 2 14
2ezk-.pdb
2EZK DNA-BINDING PROTEIN MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand TTS SS HHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHTT HHHHHHHHHHHS S HHHHHHHHHHHHTS HHHHHHHHHS Kabs/Sand
chirality -----+++-+--++++++++++--++++++++++++++++++++++-+--+++++++++++-+--+++++++++++++--++++++++++ chirality
bends S SS SSSSSSSSSS SSSSSSSSSSSSSSSSSSSSSSS SSSSSSSSSSSS S SSSSSSSSSSSSSS SSSSSSSSSS bends
turns TTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTT turns
5-turns >5555< >5555< 5-turns
3-turns >33< >33< >33< >>><<<>>3<< 3-turns
bridge-2 bridge-2
bridge-1 bridge-1
sheets sheets
4-turns >>>>XXX<<<<>>>>XXXXXXXXXXX<<<< >>>>XXXXX<<<< >>>>XXXXXX<<<< >>4>XX><<<< 4-turns
summary tTTt SS hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhTthHHHHHHHHHHHh ShHHHHHHHHHHHHhthHHHHHHHHHh summary
sequence MIARPTLEAHDYDREALWSKWDNASDSQRRLAEKWLPAVQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGR sequence
10 20 30 40 50 60 70 80 90