Secondary structure calculation program - copyright by David Keith Smith, 1989
1urk-.pdb
1URK PLASMINOGEN ACTIVATION PLASMINOGEN ACTIVATOR (UROKINASE-TYPE) (AMINO TERM HUMAN (HOMO SAPIENS) RECOMBINANT FORM EXPRESSED IN
Sequence length - 130
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 6 GLN Q 0 0 999.9 145.9 180.0 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 2 9
2 7 VAL V - 0 0 -143.7 73.9 -180.0 -155.2 999.9 121.5 0 0.0 4 -1.0 0 0.0 0 0.0 3 14
3 8 PRO P + 0 0 -50.6 90.9 180.0 144.2 39.5 104.4 0 0.0 0 0.0 0 0.0 0 0.0 5 18
4 9 SER S S S S- 0 0 -123.0 28.8 180.0 -109.6 71.2 89.7 2 -1.0 0 0.0 0 0.0 0 0.0 6 22
5 10 ASN N S S S+ 0 0 50.3 22.7 179.8 12.0 99.9 38.2 0 0.0 25 -0.6 0 0.0 0 0.0 10 26
6 11 CYS C - 0 0 158.2 169.5 -179.9 -160.3 62.5 150.3 0 0.0 0 0.0 0 0.0 0 0.0 12 29
7 12 ASP D + 0 0 -178.6 95.8 179.7 149.5 24.0 114.9 0 0.0 0 0.0 0 0.0 0 0.0 11 31
8 13 CYS C - 0 0 -118.2 -164.1 -179.9 -138.3 27.1 115.0 0 0.0 0 0.0 0 0.0 0 0.0 15 33
9 14 LEU L S S S+ 0 0 -149.1 177.6 -180.0 49.0 72.2 154.7 37 -1.1 0 0.0 36 -0.5 0 0.0 11 29
10 15 ASN N S S S- 0 0 56.5 29.3 180.0 -48.4 138.8 32.4 0 0.0 0 0.0 0 0.0 0 0.0 8 24
11 16 GLY G S S S+ 0 0 80.4 33.3 180.0 174.1 92.4 32.0 0 0.0 0 0.0 0 0.0 0 0.0 6 24
12 17 GLY G - 0 0 -56.9 -166.8 -179.9 -96.7 36.2 77.6 0 0.0 0 0.0 0 0.0 0 0.0 13 30
13 18 THR T B B A - 27 0 -123.5 119.7 179.8 -144.5 22.4 162.9 27 -0.9 27 -1.9 0 0.0 15 -1.1 9 29
14 19 CYS C + 0 0 -82.3 102.3 -179.6 167.2 34.9 131.8 0 0.0 0 0.0 0 0.0 0 0.0 12 27
15 20 VAL V - 0 0 -112.4 167.2 179.9 -177.1 13.6 134.9 13 -1.1 25 -0.8 0 0.0 0 0.0 10 27
16 21 SER S - 0 0 -163.1 139.4 -180.0 -137.2 16.9 160.9 0 0.0 0 0.0 0 0.0 0 0.0 10 22
17 22 ASN N - 0 0 -93.9 171.4 -179.0 -172.7 10.3 116.6 0 0.0 0 0.0 0 0.0 0 0.0 9 19
18 23 LYS K + 0 0 -145.7 5.0 -179.3 84.9 66.5 72.8 0 0.0 0 0.0 0 0.0 0 0.0 7 14
19 24 TYR Y S S S+ 0 0 -94.4 9.5 179.8 36.1 101.4 70.4 0 0.0 0 0.0 0 0.0 0 0.0 6 11
20 25 PHE F S S S- 0 0 -145.2 23.3 -179.7 -99.3 117.2 84.0 0 0.0 22 -1.0 0 0.0 0 0.0 6 11
21 26 SER S S S S+ 0 0 82.9 -42.3 180.0 4.8 106.3 97.0 0 0.0 0 0.0 0 0.0 0 0.0 6 12
22 27 ASN N + 0 0 -174.4 98.1 179.6 146.0 66.3 119.8 20 -1.0 0 0.0 0 0.0 0 0.0 9 16
23 28 ILE I + 0 0 -134.0 53.6 -179.7 147.3 27.4 108.8 0 0.0 0 0.0 0 0.0 0 0.0 9 18
24 29 HIS H - 0 0 -77.4 -174.3 179.9 -173.8 21.6 94.3 0 0.0 0 0.0 0 0.0 0 0.0 9 24
25 30 TRP W - 0 0 178.7 131.8 180.0 -88.2 39.3 139.3 15 -0.8 0 0.0 5 -0.6 0 0.0 10 30
26 31 CYS C - 0 0 -48.6 116.8 -179.8 -151.1 40.1 103.8 0 0.0 28 -1.3 0 0.0 0 0.0 13 33
27 32 ASN N B B A + 13 0 -95.3 79.9 179.7 144.3 39.2 128.0 13 -1.9 13 -0.9 0 0.0 0 0.0 10 31
28 33 CYS C - 0 0 -118.4 151.4 -180.0 -87.9 57.4 152.2 26 -1.3 0 0.0 0 0.0 0 0.0 11 31
29 34 PRO P t > T - 0 0 -49.0 151.1 179.6 -121.1 34.7 93.4 0 0.0 32 -1.5 0 0.0 0 0.0 7 29
30 35 LYS K T T 3 TS+ 0 0 -68.0 -28.2 179.6 58.7 116.0 32.9 0 0.0 0 0.0 0 0.0 0 0.0 7 28
31 36 LYS K T T 3 TS+ 0 0 -79.5 4.1 -179.8 86.7 96.4 64.2 0 0.0 0 0.0 0 0.0 0 0.0 9 30
32 37 PHE F t < T + 0 0 -94.5 -179.5 179.9 150.1 50.1 110.3 29 -1.5 0 0.0 0 0.0 0 0.0 12 25
33 38 GLY G B B B >T + 39 0 170.1 174.1 180.0 116.6 14.7 162.5 39 -1.2 39 -1.3 0 0.0 38 -0.9 12 26
34 39 GLY G T T > 5TS- 0 0 105.9 91.8 179.6 -58.6 90.8 47.3 0 0.0 36 -0.7 0 0.0 38 -0.7 8 23
35 40 GLN Q T T 4 5TS+ 0 0 43.1 -89.3 179.8 16.4 143.2 96.7 0 0.0 0 0.0 0 0.0 0 0.0 6 26
36 41 HIS H T T 4 5TS- 0 0 -101.7 45.7 -179.9 -81.4 130.2 103.5 34 -0.7 9 -0.5 0 0.0 0 0.0 9 32
37 42 CYS C T T 4 5TS+ 0 0 56.4 67.2 179.9 153.2 76.9 7.0 0 0.0 9 -1.1 0 0.0 0 0.0 15 28
38 43 GLU E t < T - 0 0 -71.9 161.3 -179.7 -111.4 26.8 106.9 0 0.0 71 -1.5 0 0.0 0 0.0 14 46
69 74 TRP W T T 3 TS+ 0 0 -76.3 4.8 179.3 61.2 117.6 61.5 94 -2.0 81 -1.9 91 -0.6 0 0.0 15 49
70 75 ASN N T T 3 TS+ 0 0 -109.6 7.0 179.5 110.4 74.6 70.9 0 0.0 72 -0.8 0 0.0 0 0.0 13 36
71 76 SER S S h > X TS- 0 0 -85.7 113.2 -178.8 -130.5 75.7 136.5 68 -1.5 75 -2.3 0 0.0 74 -1.2 8 35
72 77 ALA A H H > 3 TS+ 0 0 -32.5 -34.3 179.4 62.9 107.4 38.7 70 -0.8 76 -1.5 0 0.0 0 0.0 6 29
73 78 THR T H H > > TS+ 0 0 -60.2 -57.3 179.4 37.3 108.4 8.2 0 0.0 77 -1.3 0 0.0 76 -1.0 9 32
74 79 VAL V H H 4 < TS+ 0 0 -63.2 -31.2 178.3 65.5 108.9 29.1 71 -1.2 0 0.0 0 0.0 0 0.0 16 41
75 80 LEU L H H < 3 TS+ 0 0 -57.6 -31.8 179.2 49.3 102.2 28.7 71 -2.3 0 0.0 0 0.0 0 0.0 14 36
76 81 GLN Q H H < < TS+ 0 0 -75.7 -31.1 179.9 68.5 106.0 34.0 72 -1.5 0 0.0 73 -1.0 0 0.0 7 30
77 82 GLN Q S h < TS- 0 0 -63.9 -144.9 -179.3 -103.4 98.2 63.0 73 -1.3 0 0.0 0 0.0 0 0.0 9 36
78 83 THR T S S S+ 0 0 -113.6 -75.2 -179.2 44.1 100.9 44.4 0 0.0 80 -1.8 0 0.0 0 0.0 7 41
79 84 TYR Y S S S+ 0 0 -77.3 87.5 179.6 113.7 87.6 121.7 0 0.0 0 0.0 0 0.0 0 0.0 12 50
80 85 HIS H S S S- 0 0 -130.3 -148.5 -180.0 -62.8 85.5 111.1 78 -1.8 0 0.0 0 0.0 0 0.0 16 45
81 86 ALA A S S S+ 0 0 -102.2 52.1 -179.7 41.5 124.5 108.3 69 -1.9 0 0.0 0 0.0 0 0.0 13 35
82 87 HIS H S S S+ 0 0 173.3 57.0 -179.0 94.5 81.2 86.9 0 0.0 0 0.0 0 0.0 0 0.0 8 28
83 88 ARG R S S S- 0 0 -123.1 -62.8 180.0 -101.0 87.5 49.5 0 0.0 0 0.0 0 0.0 0 0.0 9 28
84 89 SER S S S S+ 0 0 156.9 -23.0 179.5 49.4 112.2 84.1 0 0.0 0 0.0 0 0.0 0 0.0 5 22
85 90 ASP D S h > > TS+ 0 0 -120.1 8.2 180.0 97.1 78.0 74.7 0 0.0 88 -1.4 0 0.0 89 -0.8 7 23
86 91 ALA A H H > 3>TS+ 0 0 -69.8 -20.1 179.5 66.8 75.8 40.0 0 0.0 91 -1.3 0 0.0 90 -1.1 13 35
87 92 LEU L H H 4 35TS+ 0 0 -73.5 -14.1 179.5 56.6 95.5 46.8 0 0.0 0 0.0 0 0.0 0 0.0 8 26
88 93 GLN Q H H 4 <5TS+ 0 0 -86.2 -28.2 179.7 28.7 119.8 37.8 85 -1.4 0 0.0 0 0.0 0 0.0 5 26
89 94 LEU L H H < 5TS- 0 0 -108.6 -1.1 -178.9 -128.3 103.2 66.2 85 -0.8 0 0.0 0 0.0 0 0.0 10 37
90 95 GLY G T h < 5T + 0 0 51.1 69.2 -179.5 157.8 49.1 11.5 86 -1.1 0 0.0 0 0.0 0 0.0 8 35
91 96 LEU L t TS- 0 0 -144.7 70.3 -180.0 -57.1 108.8 118.3 0 0.0 130 -1.0 0 0.0 0 0.0 5 18
128 133 ASP D T T 3 TS- 0 0 62.2 31.0 -180.0 -67.0 98.4 30.9 0 0.0 0 0.0 0 0.0 0 0.0 4 13
129 134 GLY G T T 3 T 0 0 58.7 32.8 -179.9 999.9 999.9 29.6 0 0.0 0 0.0 0 0.0 0 0.0 5 15
130 135 LYS K t < T 0 0 -174.2 999.9 999.9 999.9 999.9 149.0 127 -1.0 0 0.0 0 0.0 0 0.0 5 11
1urk-.pdb
1URK PLASMINOGEN ACTIVATION PLASMINOGEN ACTIVATOR (UROKINASE-TYPE) (AMINO TERM HUMAN (HOMO SAPIENS) RECOMBINANT FORM EXPRESSED IN
author author
Kabs/Sand SS SSS B SSS B TT BTTTT B S SSSSSS SS S SSSS TTSHHHHHSSSSSSSSSHHHHT SS S B Kabs/Sand
chirality -+-+-+-+-+--+---++-+++---+--++++-+-++-+-++++-+--+-+-+-+++--+-+-----++-+++++-++-++-+++++-++++-+---++ chirality
bends SS SSS SSS SS SSSS S S SSSSSS SS S SSSS SSSSSSSSSSSSSSSSSSSSS SS S bends
turns TTTTTTTTTT TTTTTTTTTT TTTTTTT turns
5-turns >5555< >5555< 5-turns
3-turns >33< >33X3><3< >33< 3-turns
bridge-2 bridge-2
bridge-1 A A B B C bridge-1
sheets sheets
4-turns >444< >>>4<<< >>44<< 4-turns
summary SS SSS B SSS B tTTtBTTTTtB S SSSSSS SS S SSSS tTThHHHHHhSSSSSSShHHHHhtSS S B summary
sequence QVPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDTMGRPCLPWNSATVLQQTYHAHRSDALQLGLGKHNYCRNP sequence
10 20 30 40 50 60 70 80 90 100
author author
Kabs/Sand SS SS EEEEE SSSEEEEE STT Kabs/Sand
chirality -+-+----+----+-------+++-+-- chirality
bends SS SS SSS SS bends
turns TTTT turns
5-turns 5-turns
3-turns >33< 3-turns
bridge-2 C bridge-2
bridge-1 AAAAA AAAAA bridge-1
sheets AAAAA AAAAA sheets
4-turns 4-turns
summary SS SSeEEEEEeSSeEEEEEe tTTt summary
sequence DNRRRPWCYVQVGLKPLVQECMVHDCADGK sequence
110 120 130