Secondary structure calculation program - copyright by David Keith Smith, 1989
1tns-.pdb
1TNS DNA-BINDING PROTEIN MU TRANSPOSASE (DNA-BINDING DOMAIN) BACTERIOPHAGE MU
Sequence length - 76
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 1 MET M 0 0 999.9 133.4 -179.9 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 2 11
2 2 GLU E + 0 0 -89.3 133.9 179.9 150.2 999.9 135.9 0 0.0 0 0.0 0 0.0 0 0.0 4 19
3 3 LEU L e + 0 0 -161.6 74.3 179.6 174.5 13.8 112.4 0 0.0 50 -1.7 0 0.0 0 0.0 7 34
4 4 TRP W E E AA - 49 0 -81.7 160.8 -179.2 -154.3 14.3 115.4 0 0.0 0 0.0 0 0.0 0 0.0 8 32
5 5 VAL V E E AA - 48 0 -135.2 155.2 -179.9 -126.9 9.5 162.6 48 -2.5 48 -2.2 0 0.0 0 0.0 10 46
6 6 SER S h > > T - 0 0 -101.0 153.1 179.6 -116.8 25.7 137.2 0 0.0 10 -1.3 0 0.0 9 -1.2 9 49
7 7 PRO P H H > > TS+ 0 0 -53.6 -44.0 -179.4 58.2 116.3 25.5 0 0.0 11 -1.6 0 0.0 10 -0.6 12 44
8 8 LYS K H H 4 3 TS+ 0 0 -58.9 -26.4 -180.0 49.4 106.8 35.0 0 0.0 0 0.0 0 0.0 0 0.0 7 34
9 9 GLU E H H 4 < TS+ 0 0 -84.3 -23.6 179.7 52.8 107.8 40.3 6 -1.2 0 0.0 0 0.0 0 0.0 8 42
10 10 LEU L H H < X TS+ 0 0 -81.8 -21.1 179.9 88.3 84.0 42.7 6 -1.3 13 -1.8 7 -0.6 12 -1.6 16 46
11 11 ALA A T h < 3 TS+ 0 0 -64.1 29.2 -179.4 48.2 91.1 81.9 7 -1.6 0 0.0 0 0.0 0 0.0 13 33
12 12 ASN N T T 3 TS+ 0 0 -146.1 -8.5 179.5 104.4 79.7 64.9 10 -1.6 0 0.0 0 0.0 0 0.0 9 30
13 13 LEU L t < T - 0 0 -79.0 147.1 -179.4 -129.1 69.7 123.9 10 -1.8 0 0.0 0 0.0 0 0.0 11 35
14 14 PRO P S S S+ 0 0 -59.0 -66.2 -179.1 49.3 106.6 7.3 0 0.0 0 0.0 0 0.0 0 0.0 9 28
15 15 GLY G S S S+ 0 0 -43.6 -36.1 -179.7 60.5 112.2 31.8 0 0.0 0 0.0 0 0.0 0 0.0 6 32
16 16 LEU L S S S- 0 0 -94.9 149.5 179.4 -100.8 101.5 134.9 0 0.0 0 0.0 0 0.0 0 0.0 11 40
17 17 PRO P - 0 0 -55.1 177.7 -179.8 -112.3 31.6 84.7 0 0.0 0 0.0 0 0.0 0 0.0 12 28
18 18 LYS K S S S+ 0 0 -98.0 7.7 -179.9 65.1 98.5 70.6 0 0.0 0 0.0 0 0.0 0 0.0 10 25
19 19 THR T S h > > TS- 0 0 -132.9 129.9 -180.0 -136.6 77.5 172.0 0 0.0 22 -1.9 0 0.0 23 -1.6 10 22
20 20 SER S H H > 3 TS+ 0 0 -52.4 -30.7 -180.0 71.9 103.8 31.8 0 0.0 24 -3.2 0 0.0 0 0.0 12 28
21 21 ALA A H H > 3 TS+ 0 0 -53.8 -38.7 179.9 41.1 102.6 25.3 0 0.0 25 -1.5 0 0.0 0 0.0 6 23
22 22 GLY G H H > < TS+ 0 0 -78.4 -35.1 180.0 51.8 114.9 29.9 19 -1.9 26 -2.6 0 0.0 0 0.0 11 26
23 23 VAL V H H X TS+ 0 0 -65.9 -54.7 179.9 42.6 113.0 10.9 19 -1.6 27 -2.5 0 0.0 0 0.0 13 40
24 24 ILE I H H X TS+ 0 0 -58.3 -44.5 179.4 49.6 116.2 19.5 20 -3.2 28 -1.0 0 0.0 0 0.0 9 37
25 25 TYR Y H H X > TS+ 0 0 -60.7 -42.9 179.6 42.0 116.2 19.9 21 -1.5 28 -0.6 0 0.0 29 -0.5 8 25
26 26 VAL V H H < > TS+ 0 0 -75.1 -22.1 179.7 74.8 99.5 40.1 22 -2.6 29 -0.7 0 0.0 0 0.0 8 32
27 27 ALA A H H X > TS+ 0 0 -58.8 -31.0 179.5 55.1 92.5 30.0 23 -2.5 31 -1.9 0 0.0 30 -1.2 9 37
28 28 LYS K H H < < TS+ 0 0 -71.4 -29.3 179.6 69.7 92.3 33.0 24 -1.0 0 0.0 25 -0.6 0 0.0 7 21
29 29 LYS K T h < < TS- 0 0 -65.1 -2.5 180.0 -2.8 130.8 54.9 26 -0.7 0 0.0 25 -0.5 0 0.0 6 20
30 30 GLN Q T T 4 < TS- 0 0 -150.2 -61.7 179.4 -136.8 83.2 71.9 27 -1.2 0 0.0 0 0.0 0 0.0 6 21
31 31 GLY G t < T - 0 0 94.0 48.9 179.5 -149.6 19.8 28.1 27 -1.9 0 0.0 0 0.0 0 0.0 7 27
32 32 TRP W - 0 0 -48.5 139.3 179.9 -82.6 43.5 100.2 0 0.0 34 -0.5 0 0.0 0 0.0 9 32
33 33 GLN Q - 0 0 -47.9 98.1 -179.8 -173.1 61.4 102.3 0 0.0 49 -1.2 0 0.0 35 -0.6 7 29
34 34 ASN N - 0 0 -103.0 119.7 179.5 -148.6 13.6 150.5 32 -0.5 0 0.0 0 0.0 0 0.0 9 35
35 35 ARG R - 0 0 -87.1 128.7 179.8 -145.3 13.0 135.9 33 -0.6 0 0.0 0 0.0 0 0.0 8 28
36 36 THR T - 0 0 -91.7 152.4 -179.9 -176.0 16.2 129.0 0 0.0 0 0.0 0 0.0 0 0.0 8 24
37 37 ARG R t > T - 0 0 -148.9 84.0 -180.0 -174.2 10.0 128.4 45 -1.3 39 -2.7 0 0.0 40 -1.2 8 20
38 38 ALA A T T 3 TS+ 0 0 -75.2 54.6 -179.7 76.3 74.7 102.9 0 0.0 0 0.0 0 0.0 0 0.0 9 14
39 39 GLY G T T 3 TS+ 0 0 -142.7 1.1 179.7 63.6 80.0 70.9 37 -2.7 0 0.0 0 0.0 0 0.0 7 12
40 40 VAL V S t < TS- 0 0 -93.1 -83.1 179.8 -8.6 122.1 32.1 37 -1.2 0 0.0 0 0.0 0 0.0 6 14
41 41 LYS K S S S- 0 0 -80.5 -74.1 179.9 -93.4 102.2 16.5 0 0.0 0 0.0 0 0.0 0 0.0 6 13
42 42 GLY G S S S+ 0 0 154.6 72.2 179.9 64.1 96.9 79.1 0 0.0 0 0.0 0 0.0 0 0.0 7 10
43 43 GLY G S S S- 0 0 161.7 46.5 179.9 -67.8 110.8 73.2 0 0.0 0 0.0 0 0.0 0 0.0 5 12
44 44 LYS K - 0 0 52.1 97.3 180.0 -138.9 56.7 25.2 0 0.0 0 0.0 0 0.0 0 0.0 8 17
45 45 ALA A - 0 0 -89.7 127.7 -179.5 -141.2 12.8 138.2 0 0.0 37 -1.3 0 0.0 0 0.0 11 24
46 46 ILE I - 0 0 -87.4 150.9 179.6 -178.9 22.0 125.8 0 0.0 0 0.0 0 0.0 0 0.0 10 37
47 47 GLU E - 0 0 -140.0 170.4 179.9 -137.1 18.0 152.7 0 0.0 0 0.0 0 0.0 0 0.0 11 40
48 48 TYR Y E E AA - 5 0 -136.2 129.7 179.8 -126.7 18.3 171.7 5 -2.2 5 -2.5 0 0.0 50 -0.5 14 44
49 49 ASN N E E >AA > T - 4 0 -75.8 120.8 -179.5 -144.7 14.3 127.1 33 -1.2 52 -2.1 0 0.0 53 -1.3 14 36
50 50 ALA A T e 4 3 TS+ 0 0 -54.4 -32.4 -179.8 58.9 102.2 31.1 3 -1.7 0 0.0 48 -0.5 0 0.0 10 41
51 51 ASN N T T 4 3 TS+ 0 0 -70.3 -19.3 -180.0 50.9 104.8 41.6 0 0.0 0 0.0 0 0.0 0 0.0 7 28
52 52 SER S T T 4 < TS+ 0 0 -89.0 -23.0 179.9 93.6 90.7 42.8 49 -2.1 0 0.0 0 0.0 0 0.0 8 37
53 53 LEU L S t < TS- 0 0 -67.8 148.4 179.4 -106.3 86.6 113.9 49 -1.3 0 0.0 0 0.0 0 0.0 10 43
54 54 PRO P h > T - 0 0 -57.2 -165.1 180.0 -96.8 37.1 74.5 0 0.0 58 -1.0 0 0.0 0 0.0 7 32
55 55 VAL V H H > TS+ 0 0 -88.4 -37.9 -179.8 58.8 120.2 31.7 0 0.0 59 -2.3 0 0.0 0 0.0 6 21
56 56 GLU E H H > TS+ 0 0 -59.0 -39.1 180.0 37.5 115.1 24.6 0 0.0 60 -1.1 0 0.0 0 0.0 8 23
57 57 ALA A H H > TS+ 0 0 -81.0 -36.7 179.8 52.7 116.6 29.0 0 0.0 61 -2.6 0 0.0 0 0.0 13 41
58 58 LYS K H H X TS+ 0 0 -61.8 -64.1 179.8 43.3 111.4 3.3 54 -1.0 62 -2.4 0 0.0 0 0.0 11 34
59 59 ALA A H H X TS+ 0 0 -48.3 -43.8 179.8 47.7 118.1 23.5 55 -2.3 63 -1.0 0 0.0 0 0.0 8 26
60 60 ALA A H H X TS+ 0 0 -67.1 -34.5 179.8 53.7 110.4 28.2 56 -1.1 64 -1.8 0 0.0 0 0.0 10 28
61 61 LEU L H H X TS+ 0 0 -63.8 -61.4 180.0 49.6 105.3 5.0 57 -2.6 65 -0.7 0 0.0 0 0.0 11 39
62 62 LEU L H H < TS+ 0 0 -48.8 -25.1 -179.9 60.8 108.2 36.3 58 -2.4 0 0.0 0 0.0 0 0.0 8 32
63 63 LEU L H H < > TS+ 0 0 -69.0 -54.8 -179.5 40.1 106.4 11.7 59 -1.0 66 -1.4 0 0.0 0 0.0 7 23
64 64 ARG R H H < 3 TS+ 0 0 -75.4 8.1 179.9 79.7 100.7 65.6 60 -1.8 0 0.0 0 0.0 0 0.0 6 28
65 65 GLN Q T h < 3 T + 0 0 -88.9 -11.6 179.9 126.0 57.7 51.7 61 -0.7 0 0.0 0 0.0 0 0.0 7 28
66 66 GLY G S t < TS- 0 0 -48.3 114.9 -179.9 -9.4 89.6 103.4 63 -1.4 0 0.0 0 0.0 0 0.0 6 20
67 67 GLU E S S S- 0 0 56.0 93.4 -179.9 -177.0 77.9 21.9 0 0.0 0 0.0 0 0.0 0 0.0 6 16
68 68 ILE I - 0 0 -85.1 -77.9 -179.5 -53.6 50.2 21.8 0 0.0 0 0.0 0 0.0 0 0.0 5 20
69 69 GLU E S S S- 0 0 -136.2 -133.6 -180.0 -41.6 82.3 103.6 0 0.0 0 0.0 0 0.0 0 0.0 6 15
70 70 THR T S S S+ 0 0 -80.7 -139.3 180.0 80.5 95.3 68.3 0 0.0 72 -2.6 0 0.0 0 0.0 5 11
71 71 SER S S S S+ 0 0 73.3 -74.2 179.9 39.1 106.4 113.7 0 0.0 0 0.0 0 0.0 0 0.0 5 11
72 72 LEU L S t > TS+ 0 0 -94.4 28.6 -179.9 134.4 73.7 87.6 70 -2.6 75 -1.5 0 0.0 0 0.0 8 11
73 73 GLY G T T 3 T + 0 0 -50.4 -18.3 180.0 73.7 62.2 41.1 0 0.0 0 0.0 0 0.0 0 0.0 7 11
74 74 TYR Y T T 3 TS- 0 0 -83.7 25.9 -179.8 -122.4 110.4 82.8 0 0.0 0 0.0 0 0.0 0 0.0 5 10
75 75 PHE F t < T 0 0 40.8 23.6 179.8 999.9 999.9 40.3 72 -1.5 0 0.0 0 0.0 0 0.0 5 11
76 76 GLU E 0 0 57.8 999.9 999.9 999.9 999.9 13.1 0 0.0 0 0.0 0 0.0 0 0.0 4 10
1tns-.pdb
1TNS DNA-BINDING PROTEIN MU TRANSPOSASE (DNA-BINDING DOMAIN) BACTERIOPHAGE MU
author author
Kabs/Sand EE HHHHTT SSS SSHHHHHHHHHTT TTSSSS EETTTS HHHHHHHHHHTSS SSSSTT Kabs/Sand
chirality ++---++++++-++--+-+++++++++---------++--+-------+++--+++++++++++----++++- chirality
bends SSSSSS SSS SSSSSSSSSSSSS SSSSSS SSSS SSSSSSSSSS SS SSSS S bends
turns TTTTTTTT TTTTTTTTTTTTT TTTT TTTTTTTTTTTTTTTTTT TTTT turns
5-turns 5-turns
3-turns >>333< >>><<< >33< >33< >33< >33< 3-turns
bridge-2 bridge-2
bridge-1 AA AA bridge-1
sheets AA AA sheets
4-turns >>44<< >>>>XXX444<>>>>XXXX<<<< 4-turns
summary eEEhHHHHhTtSSS ShHHHHHHHHHhTt tTTtSSS EEeTTthHHHHHHHHHHhtS SSStTTt summary
sequence MELWVSPKELANLPGLPKTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNANSLPVEAKAALLLRQGEIETSLGYFE sequence
10 20 30 40 50 60 70