Secondary structure calculation program - copyright by David Keith Smith, 1989
1rip-.pdb
1RIP RIBOSOMAL PROTEIN RIBOSOMAL PROTEIN S17 (NMR, 6 STRUCTURES) (BACILLUS STEAROTHERMOPHILUS)
Sequence length - 81
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 5 GLN Q 0 0 999.9 140.0 179.9 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 3 11
2 6 ARG R - 0 0 -61.0 -77.8 179.7 -45.6 999.9 9.3 0 0.0 0 0.0 0 0.0 0 0.0 3 13
3 7 LYS K S S S+ 0 0 -135.4 -154.6 179.5 96.3 84.2 120.5 0 0.0 0 0.0 0 0.0 0 0.0 6 27
4 8 VAL V - 0 0 101.8 -152.0 -179.7 -168.3 37.9 135.1 0 0.0 0 0.0 0 0.0 0 0.0 11 36
5 9 TYR Y B B A - 58 0 156.0 -153.4 -177.6 -164.2 2.5 168.2 58 -0.8 58 -1.3 0 0.0 0 0.0 8 39
6 10 VAL V + 0 0 154.7 159.5 175.8 76.4 33.0 139.3 0 0.0 8 -0.5 0 0.0 0 0.0 14 44
7 11 GLY G e + 0 0 129.3 -124.9 -174.1 88.1 47.9 155.5 0 0.0 56 -2.9 0 0.0 0 0.0 14 40
8 12 ARG R E E AA S- 55 0 -29.0 138.1 171.9 -13.3 95.0 78.5 6 -0.5 10 -0.9 0 0.0 0 0.0 15 42
9 13 VAL V E E AA - 54 0 74.1 -101.9 -173.4 -160.1 45.7 127.6 54 -1.5 54 -0.9 0 0.0 0 0.0 17 44
10 14 VAL V S S S+ 0 0 98.9 -17.3 176.4 35.8 96.3 82.1 8 -0.9 19 -1.1 0 0.0 0 0.0 18 50
11 15 SER S + 0 0 -141.6 -164.8 178.0 132.4 64.2 126.0 0 0.0 0 0.0 0 0.0 0 0.0 18 39
12 16 ASP D - 0 0 139.2 -36.7 -177.3 -101.5 66.4 92.0 44 -1.1 0 0.0 0 0.0 0 0.0 18 37
13 17 LYS K + 0 0 93.8 144.8 -178.1 148.7 55.9 81.6 0 0.0 0 0.0 0 0.0 0 0.0 11 29
14 18 MET M S S S- 0 0 156.5 46.7 179.9 -88.7 75.5 73.8 0 0.0 0 0.0 0 0.0 0 0.0 8 25
15 19 ASP D S S S+ 0 0 35.6 27.6 179.9 78.7 121.4 38.8 0 0.0 0 0.0 0 0.0 0 0.0 7 16
16 20 LYS K S S S- 0 0 -123.0 -60.9 176.7 -139.1 86.0 50.6 43 -0.8 0 0.0 0 0.0 0 0.0 8 25
17 21 THR T + 0 0 97.3 100.1 178.9 12.5 60.9 42.5 43 -1.8 0 0.0 0 0.0 0 0.0 13 30
18 22 ILE I S S S+ 0 0 88.9 156.3 179.9 109.8 70.8 85.1 0 0.0 0 0.0 0 0.0 0 0.0 14 46
19 23 THR T - 0 0 145.6 -94.3 -174.7 -114.1 58.7 134.6 10 -1.1 57 -0.7 0 0.0 0 0.0 15 50
20 24 VAL V - 0 0 158.3 -139.1 -176.1 -143.9 16.1 159.4 42 -1.7 0 0.0 41 -1.3 0 0.0 22 49
21 25 LEU L - 0 0 147.5 166.6 -170.3 -168.9 7.5 137.1 0 0.0 0 0.0 0 0.0 0 0.0 14 48
22 26 VAL V B B B - 39 0 174.7 54.5 176.1 -85.7 48.1 86.5 39 -1.1 39 -2.2 0 0.0 24 -0.5 13 42
23 27 GLU E - 0 0 71.7 -113.8 -177.7 -102.6 56.4 124.9 0 0.0 0 0.0 0 0.0 0 0.0 10 33
24 28 THR T + 0 0 150.9 110.7 178.7 27.5 69.3 96.6 22 -0.5 0 0.0 0 0.0 0 0.0 10 30
25 29 TYR Y S S S- 0 0 108.9 165.7 179.1 -64.3 92.3 106.7 38 -2.3 0 0.0 0 0.0 0 0.0 9 25
26 30 LYS K - 0 0 -47.3 -87.5 178.5 -146.5 54.7 24.6 0 0.0 0 0.0 0 0.0 0 0.0 8 21
27 31 LYS K - 0 0 143.8 -34.9 -179.6 -176.6 19.9 94.5 0 0.0 0 0.0 0 0.0 0 0.0 9 19
28 32 HIS H - 0 0 37.0 -155.6 -178.2 -52.4 61.3 89.0 0 0.0 0 0.0 0 0.0 0 0.0 5 16
29 33 PRO P S S S- 0 0 -76.4 -56.0 -178.9 -106.4 73.0 14.6 0 0.0 0 0.0 0 0.0 0 0.0 4 13
30 34 LEU L + 0 0 150.8 -24.6 -179.9 145.3 66.0 86.2 0 0.0 0 0.0 0 0.0 0 0.0 8 15
31 35 TYR Y S S S- 0 0 -2.5 -84.1 -179.8 -76.5 79.1 56.0 0 0.0 0 0.0 0 0.0 0 0.0 4 11
32 36 GLY G S S S+ 0 0 174.3 37.2 179.4 127.1 88.8 78.6 0 0.0 0 0.0 0 0.0 0 0.0 5 12
33 37 LYS K S S S- 0 0 -98.4 40.4 -178.3 -115.7 77.2 99.1 0 0.0 35 -1.7 0 0.0 0 0.0 5 14
34 38 ARG R + 0 0 65.4 -91.0 178.5 176.8 48.0 116.2 0 0.0 36 -0.9 0 0.0 0 0.0 5 16
35 39 VAL V - 0 0 99.9 -92.7 -175.9 -146.0 28.0 140.7 33 -1.7 0 0.0 0 0.0 0 0.0 11 18
36 40 LYS K - 0 0 115.2 -50.4 171.5 -113.7 41.7 122.5 34 -0.9 0 0.0 0 0.0 0 0.0 10 20
37 41 TYR Y - 0 0 99.5 34.9 173.8 -48.6 57.0 40.6 0 0.0 0 0.0 0 0.0 0 0.0 10 24
38 42 SER S S S S- 0 0 114.4 -79.7 -177.9 -59.2 87.5 132.1 0 0.0 25 -2.3 0 0.0 0 0.0 10 33
39 43 LYS K B B B - 22 0 -173.4 -153.0 -174.5 -142.7 33.6 150.6 22 -2.2 22 -1.1 0 0.0 0 0.0 11 37
40 44 LYS K - 0 0 168.1 144.9 -173.4 -159.4 6.6 146.7 0 0.0 0 0.0 0 0.0 0 0.0 10 47
41 45 TYR Y - 0 0 -155.7 129.0 -177.9 -100.2 28.1 161.7 0 0.0 20 -1.3 0 0.0 0 0.0 8 52
42 46 LYS K + 0 0 -19.1 -157.2 179.6 137.1 49.7 47.7 0 0.0 20 -1.7 0 0.0 0 0.0 15 45
43 47 ALA A - 0 0 136.9 -154.4 -179.9 -158.3 25.6 163.8 0 0.0 17 -1.8 0 0.0 16 -0.8 16 42
44 48 HIS H - 0 0 171.9 -151.5 178.8 -42.0 48.0 163.9 0 0.0 12 -1.1 0 0.0 46 -0.8 16 31
45 49 ASP D - 0 0 -108.6 96.5 -178.8 -172.5 44.7 146.9 0 0.0 47 -1.7 0 0.0 0 0.0 14 29
46 50 GLU E - 0 0 -85.2 57.4 -180.0 -50.3 67.4 108.6 44 -0.8 0 0.0 0 0.0 0 0.0 9 26
47 51 HIS H S t > TS+ 0 0 89.0 145.2 -178.8 51.0 129.8 78.2 45 -1.7 50 -1.8 0 0.0 0 0.0 5 19
48 52 ASN N T T 3 TS- 0 0 69.1 8.5 -178.7 -84.5 125.0 50.3 0 0.0 0 0.0 0 0.0 0 0.0 5 18
49 53 GLU E T T 3 T - 0 0 69.0 6.5 179.7 -142.5 58.0 52.3 0 0.0 0 0.0 0 0.0 0 0.0 6 19
50 54 ALA A t < T - 0 0 37.7 -99.0 -178.8 -163.4 17.8 94.0 47 -1.8 0 0.0 0 0.0 0 0.0 11 29
51 55 LYS K S S S- 0 0 87.9 78.6 -178.2 -7.9 73.9 25.7 0 0.0 0 0.0 0 0.0 0 0.0 9 29
52 56 VAL V S S S- 0 0 64.9 72.7 -179.4 -138.1 78.5 6.3 0 0.0 0 0.0 0 0.0 0 0.0 10 36
53 57 GLY G - 0 0 -28.3 -45.1 -179.4 -120.7 39.8 37.8 0 0.0 0 0.0 0 0.0 0 0.0 15 41
54 58 ASP D E E AA - 9 0 135.3 -109.7 179.6 -21.4 62.4 160.7 9 -0.9 9 -1.5 0 0.0 0 0.0 12 39
55 59 ILE I E E AAC S+ 8 76 -137.2 92.7 -178.5 146.3 73.7 142.0 76 -1.7 76 -0.7 0 0.0 0 0.0 13 39
56 60 VAL V e - 0 0 -94.7 -107.3 -176.9 -140.5 31.9 49.2 7 -2.9 0 0.0 0 0.0 0 0.0 16 46
57 61 LYS K + 0 0 158.7 174.2 -177.9 126.3 38.0 156.9 19 -0.7 0 0.0 0 0.0 0 0.0 16 41
58 62 ILE I B B A - 5 0 151.2 -118.9 -179.5 -133.2 40.0 156.4 5 -1.3 5 -0.8 0 0.0 0 0.0 14 42
59 63 MET M - 0 0 162.1 -105.1 -177.2 -172.5 14.7 133.7 0 0.0 0 0.0 0 0.0 0 0.0 11 41
60 64 GLU E - 0 0 81.9 52.7 179.0 -147.8 29.5 19.7 0 0.0 0 0.0 0 0.0 0 0.0 9 38
61 65 THR T - 0 0 -47.9 160.5 179.9 -79.3 33.0 90.4 0 0.0 0 0.0 0 0.0 0 0.0 9 32
62 66 ARG R - 0 0 -66.9 145.8 179.6 -97.6 54.7 112.8 0 0.0 0 0.0 0 0.0 0 0.0 5 24
63 67 PRO P + 0 0 -62.7 136.5 -180.0 175.7 41.1 110.6 0 0.0 0 0.0 0 0.0 0 0.0 7 15
64 68 LEU L S S S- 0 0 -125.5 4.4 -180.0 -42.2 73.7 71.0 0 0.0 0 0.0 0 0.0 0 0.0 5 11
65 69 SER S S S S- 0 0 168.0 -69.9 -179.9 -0.7 127.3 106.0 0 0.0 0 0.0 0 0.0 0 0.0 4 9
66 70 ALA A S S S+ 0 0 -143.2 56.9 180.0 96.8 99.0 108.4 0 0.0 0 0.0 0 0.0 0 0.0 5 10
67 71 THR T + 0 0 -148.6 104.6 -179.6 143.3 21.5 144.9 0 0.0 0 0.0 0 0.0 0 0.0 6 14
68 72 LYS K + 0 0 -119.2 -9.0 179.5 102.4 45.4 59.8 0 0.0 0 0.0 0 0.0 0 0.0 8 19
69 73 ARG R - 0 0 -65.9 172.0 -179.8 -135.1 63.9 98.2 0 0.0 0 0.0 0 0.0 0 0.0 5 22
70 74 PHE F - 0 0 -125.6 -179.7 -179.5 -125.1 2.8 134.3 0 0.0 0 0.0 0 0.0 0 0.0 8 34
71 75 ARG R + 0 0 -116.8 177.0 -179.4 110.0 45.2 132.4 0 0.0 0 0.0 0 0.0 0 0.0 9 31
72 76 LEU L - 0 0 164.7 -132.1 -174.0 -139.7 49.8 146.7 0 0.0 0 0.0 0 0.0 0 0.0 9 32
73 77 VAL V - 0 0 144.6 -15.3 177.1 -110.6 61.6 91.3 0 0.0 0 0.0 0 0.0 0 0.0 6 25
74 78 GLU E + 0 0 91.6 179.2 -178.8 167.4 45.1 107.0 0 0.0 0 0.0 0 0.0 0 0.0 7 33
75 79 ILE I + 0 0 150.8 -177.2 -178.5 144.1 16.2 146.6 0 0.0 0 0.0 0 0.0 0 0.0 9 33
76 80 VAL V B B C S- 55 0 146.1 -41.4 179.5 -4.2 73.8 95.9 55 -0.7 55 -1.7 0 0.0 0 0.0 12 37
77 81 GLU E S S S- 0 0 -173.7 153.6 -180.0 -99.6 71.2 162.1 0 0.0 0 0.0 0 0.0 0 0.0 8 26
78 82 LYS K S S S+ 0 0 -79.4 155.6 -179.9 41.8 93.6 116.8 0 0.0 0 0.0 0 0.0 0 0.0 4 14
79 83 ALA A S S S+ 0 0 72.2 89.2 -179.9 90.5 83.5 20.8 0 0.0 0 0.0 0 0.0 0 0.0 4 11
80 84 VAL V 0 0 154.0 64.4 -179.9 999.9 999.9 77.6 0 0.0 0 0.0 0 0.0 0 0.0 4 13
81 85 ARG R 0 0 88.6 999.9 999.9 999.9 999.9 20.7 0 0.0 0 0.0 0 0.0 0 0.0 2 9
1rip-.pdb
1RIP RIBOSOMAL PROTEIN RIBOSOMAL PROTEIN S17 (NMR, 6 STRUCTURES) (BACILLUS STEAROTHERMOPHILUS)
author author
Kabs/Sand S B EES SSS S B S S SSS SB STT SS EE B SSS BSSS Kabs/Sand
chirality -+--++--++-+-+-++-----+-----+-+-+-------+----+-------+-+-----+--+++--+--++--++ chirality
bends S S S SSS S S S SSS S SS SS S SSS SSSS bends
turns TTTT turns
5-turns 5-turns
3-turns >33< 3-turns
bridge-2 C bridge-2
bridge-1 A AA B B AA A C bridge-1
sheets AA AA sheets
4-turns 4-turns
summary S B eEES SSS S B S S SSS SB tTTtSS EEe B SSS BSSS summary
sequence QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAVR sequence
10 20 30 40 50 60 70 80