Secondary structure calculation program - copyright by David Keith Smith, 1989
1pft-.pdb
1PFT TRANSCRIPTION INITIATION MOL_ID: 1; MOL_ID: 1;
Sequence length - 50
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 1 MET M 0 0 999.9 125.3 -175.6 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 3 13
2 2 VAL V - 0 0 -160.6 122.8 -168.4 -14.7 999.9 165.4 0 0.0 0 0.0 0 0.0 0 0.0 4 10
3 3 ASN N S S S- 0 0 70.1 -155.5 -169.0 -28.0 119.1 113.3 0 0.0 0 0.0 0 0.0 0 0.0 4 8
4 4 LYS K S S S- 0 0 -61.1 -43.5 -171.8 -144.1 76.2 30.6 0 0.0 0 0.0 0 0.0 0 0.0 4 10
5 5 GLN Q + 0 0 68.1 86.8 168.4 105.9 50.1 10.8 0 0.0 0 0.0 0 0.0 0 0.0 6 20
6 6 LYS K + 0 0 -166.7 -176.5 177.2 30.6 49.2 151.3 0 0.0 0 0.0 0 0.0 0 0.0 6 26
7 7 VAL V S S S- 0 0 59.5 -163.4 168.3 -46.2 102.4 76.5 0 0.0 0 0.0 0 0.0 0 0.0 9 29
8 8 CYS C t > T - 0 0 -104.6 112.4 168.1 -174.0 43.9 146.1 0 0.0 12 -1.3 0 0.0 0 0.0 13 29
9 9 PRO P T T 4 TS+ 0 0 -67.3 -14.7 -174.5 58.5 83.0 62.5 0 0.0 0 0.0 0 0.0 0 0.0 7 26
10 10 ALA A T T 4 TS+ 0 0 -82.4 -74.5 -164.0 4.4 121.4 26.0 0 0.0 0 0.0 0 0.0 0 0.0 7 22
11 11 CYS C T T 4 TS- 0 0 -97.1 -6.5 -161.2 -107.5 96.6 66.9 0 0.0 0 0.0 0 0.0 0 0.0 7 19
12 12 GLU E S t < TS+ 0 0 60.2 68.7 168.5 139.8 71.3 5.4 8 -1.3 0 0.0 0 0.0 0 0.0 7 20
13 13 SER S - 0 0 -138.9 105.5 -167.4 -165.9 36.9 150.2 0 0.0 0 0.0 0 0.0 0 0.0 13 22
14 14 ALA A + 0 0 -70.1 -15.7 177.2 98.0 63.6 59.3 0 0.0 16 -1.1 0 0.0 0 0.0 8 24
15 15 GLU E e + 0 0 -77.2 104.8 167.2 161.8 50.1 138.5 0 0.0 28 -2.7 0 0.0 0 0.0 9 24
16 16 LEU L E E AA - 27 0 -109.0 -179.6 -175.1 -153.1 19.7 126.8 14 -1.1 0 0.0 0 0.0 0 0.0 12 29
17 17 ILE I E E AA - 26 0 -158.9 153.2 -169.6 -114.3 13.1 164.7 26 -2.8 26 -2.4 0 0.0 0 0.0 8 27
18 18 TYR Y E E AA - 25 0 -100.1 159.7 -172.0 -157.5 9.9 119.1 0 0.0 0 0.0 0 0.0 0 0.0 8 26
19 19 ASP D E E >AA >T + 24 0 -140.8 80.0 -171.7 179.2 9.8 135.0 24 -2.4 23 -2.8 0 0.0 24 -2.5 9 22
20 20 PRO P T T 4 5TS+ 0 0 -60.3 -18.7 -174.8 65.5 79.0 57.5 0 0.0 0 0.0 0 0.0 0 0.0 6 17
21 21 GLU E T T 4 5TS+ 0 0 -75.0 -37.2 178.4 16.1 121.9 22.6 0 0.0 0 0.0 0 0.0 0 0.0 5 15
22 22 ARG R T T 4 5TS- 0 0 -102.8 -24.4 -168.5 -113.5 106.1 52.6 0 0.0 0 0.0 0 0.0 0 0.0 7 16
23 23 GLY G T T < 5TS+ 0 0 85.3 36.0 -168.6 143.5 72.1 31.4 19 -2.8 38 -0.9 0 0.0 0 0.0 10 19
24 24 GLU E E E AA 5555< 5-turns
3-turns 3-turns
bridge-2 A bridge-2
bridge-1 AAAA AAAA A bridge-1
sheets AAAA AAAA sheets
4-turns >444< >444< 4-turns
summary SS StTTTt eEEEETTTTEEEEeSS B SSSS summary
sequence MVNKQKVCPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFDA sequence
10 20 30 40 50