Secondary structure calculation program - copyright by David Keith Smith, 1989
1opc-.pdb
1OPC TRANSCRIPTION REGULATION MOL_ID: 1; MOL_ID: 1;
Sequence length - 99
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 137 VAL V 0 0 999.9 -63.4 -168.7 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 7 27
2 138 ILE I E E AA - 9 0 -131.7 135.5 175.2 -174.8 999.9 161.9 9 -2.9 9 -3.6 0 0.0 0 0.0 8 34
3 139 ALA A E E AA + 8 0 -123.9 130.5 167.1 157.5 13.9 166.9 0 0.0 0 0.0 0 0.0 0 0.0 9 35
4 140 PHE F E E AA > T - 7 0 -146.9 142.5 -172.6 -33.1 63.5 168.4 7 -1.4 7 -2.7 0 0.0 0 0.0 9 39
5 141 GLY G T T 3 TS- 0 0 49.0 -128.9 -179.4 -24.1 126.6 109.9 0 0.0 0 0.0 0 0.0 0 0.0 5 31
6 142 LYS K T e 3 TS+ 0 0 -92.0 8.4 -173.9 101.2 120.8 69.4 0 0.0 19 -2.7 0 0.0 0 0.0 7 27
7 143 PHE F E E AAB< T - 4 18 -105.8 144.4 170.7 -173.1 47.4 128.2 4 -2.7 4 -1.4 0 0.0 0 0.0 12 40
8 144 LYS K E E AAB - 3 17 -128.5 124.7 -178.0 -171.0 12.3 168.4 17 -1.8 17 -2.1 0 0.0 0 0.0 12 36
9 145 LEU L E E AAB - 2 16 -123.0 130.7 179.3 -154.7 13.8 170.0 2 -3.6 2 -2.9 0 0.0 11 -0.7 11 43
10 146 ASN N E E >A B >T - 0 15 -104.7 110.1 -170.8 -166.9 6.0 149.7 15 -2.8 14 -1.5 0 0.0 15 -0.7 10 32
11 147 LEU L T T 4 5TS+ 0 0 -71.9 -34.8 173.8 50.4 84.2 34.7 9 -0.7 0 0.0 0 0.0 0 0.0 9 35
12 148 GLY G T T 4 5TS+ 0 0 -69.4 -38.4 -171.0 26.0 123.4 31.1 0 0.0 0 0.0 0 0.0 0 0.0 5 21
13 149 THR T T T 4 5TS- 0 0 -108.5 -9.2 -175.3 -123.9 97.3 62.3 0 0.0 0 0.0 0 0.0 0 0.0 5 21
14 150 ARG R T T < 5T + 0 0 64.5 35.3 177.2 149.8 58.3 39.7 10 -1.5 0 0.0 0 0.0 0 0.0 9 35
15 151 GLU E E E AB TS- 7 21 -110.0 117.6 -173.0 -17.0 92.1 166.7 21 -2.9 21 -1.6 0 0.0 0 0.0 10 27
19 155 GLU E T e 3 TS- 0 0 52.0 42.8 -171.5 -56.5 130.6 24.2 6 -2.7 0 0.0 17 -0.5 0 0.0 6 21
20 156 ASP D T T 3 TS+ 0 0 61.5 9.6 177.3 124.3 111.9 62.5 0 0.0 0 0.0 0 0.0 0 0.0 7 19
21 157 GLU E E E AC < T - 18 0 -95.8 129.6 -175.6 -108.8 69.6 149.4 18 -1.6 18 -2.9 0 0.0 0 0.0 6 20
22 158 PRO P E E AC - 17 0 -64.6 125.7 -177.0 -176.5 38.0 112.5 0 0.0 0 0.0 0 0.0 0 0.0 8 21
23 159 MET M E E AC - 16 0 -128.6 127.3 -174.9 -125.1 20.9 167.5 16 -2.9 16 -0.6 0 0.0 0 0.0 8 29
24 160 PRO P - 0 0 -76.8 153.3 176.5 -156.8 13.2 121.3 0 0.0 0 0.0 0 0.0 0 0.0 6 32
25 161 LEU L - 0 0 -129.0 108.6 166.7 -137.3 15.8 162.7 0 0.0 0 0.0 0 0.0 0 0.0 10 42
26 162 THR T h > T - 0 0 -50.0 163.5 178.8 -96.5 36.5 87.4 0 0.0 30 -2.6 0 0.0 0 0.0 6 39
27 163 SER S H H > TS+ 0 0 -55.1 -47.3 -173.2 41.6 124.6 25.0 0 0.0 31 -2.5 0 0.0 0 0.0 10 39
28 164 GLY G H H > TS+ 0 0 -75.9 -37.0 171.3 52.0 113.5 32.5 0 0.0 32 -2.6 0 0.0 0 0.0 15 41
29 165 GLU E H H > TS+ 0 0 -56.7 -49.4 177.1 44.4 114.3 13.2 0 0.0 33 -2.9 0 0.0 0 0.0 13 49
30 166 PHE F H H X TS+ 0 0 -59.6 -47.7 179.4 53.4 111.6 23.2 26 -2.6 34 -3.0 0 0.0 0 0.0 10 56
31 167 ALA A H H X TS+ 0 0 -58.2 -49.2 -178.2 40.6 114.4 21.5 27 -2.5 35 -1.7 0 0.0 0 0.0 14 52
32 168 VAL V H H X TS+ 0 0 -65.2 -45.9 178.0 49.0 116.3 21.1 28 -2.6 36 -2.4 0 0.0 0 0.0 16 62
33 169 LEU L H H X TS+ 0 0 -62.4 -41.3 177.3 50.6 110.7 18.7 29 -2.9 37 -2.5 0 0.0 0 0.0 9 73
34 170 LYS K H H X TS+ 0 0 -62.9 -36.0 -179.5 51.1 109.5 27.9 30 -3.0 38 -1.6 0 0.0 0 0.0 10 57
35 171 ALA A H H X TS+ 0 0 -66.2 -44.3 177.7 45.3 114.1 16.9 31 -1.7 39 -0.7 0 0.0 0 0.0 11 52
36 172 LEU L H H < > TS+ 0 0 -58.2 -56.6 -167.3 41.1 116.2 15.1 32 -2.4 39 -1.1 0 0.0 0 0.0 13 57
37 173 VAL V H H < 3 TS+ 0 0 -76.3 -24.3 174.9 60.0 108.8 39.2 33 -2.5 0 0.0 0 0.0 0 0.0 11 46
38 174 SER S H H < 3 TS+ 0 0 -76.6 -7.8 170.1 45.4 109.9 50.8 34 -1.6 0 0.0 0 0.0 0 0.0 6 38
39 175 HIS H S h < X TS- 0 0 -123.9 62.5 -169.8 -164.3 87.5 118.3 36 -1.1 42 -2.5 35 -0.7 0 0.0 8 35
40 176 PRO P T T 3 TS- 0 0 -60.1 131.3 -179.0 -0.9 71.9 99.1 0 0.0 0 0.0 0 0.0 0 0.0 10 34
41 177 ARG R T T 3 TS+ 0 0 63.6 15.6 166.8 121.9 98.0 50.1 96 -2.7 0 0.0 0 0.0 0 0.0 8 28
42 178 GLU E t < T - 0 0 -101.8 110.1 173.5 -135.6 62.3 160.2 39 -2.5 0 0.0 0 0.0 0 0.0 7 32
43 179 PRO P - 0 0 -59.7 133.4 -168.8 -154.9 23.2 115.5 0 0.0 0 0.0 0 0.0 0 0.0 10 37
44 180 LEU L B B A - 94 0 -124.2 128.4 -176.7 -132.5 7.1 168.7 94 -3.0 94 -2.2 0 0.0 0 0.0 12 39
45 181 SER S h > T - 0 0 -71.3 167.7 168.8 -107.5 30.9 108.1 0 0.0 49 -2.6 0 0.0 0 0.0 9 34
46 182 ARG R H H > TS+ 0 0 -56.5 -44.7 174.8 52.0 122.8 27.1 0 0.0 50 -2.7 0 0.0 0 0.0 9 40
47 183 ASP D H H > TS+ 0 0 -55.9 -48.3 -179.9 46.9 110.3 20.9 0 0.0 51 -2.4 0 0.0 0 0.0 7 29
48 184 LYS K H H > TS+ 0 0 -65.1 -34.2 173.6 49.0 113.9 21.9 0 0.0 52 -2.7 0 0.0 0 0.0 8 34
49 185 LEU L H H X TS+ 0 0 -68.6 -48.4 174.1 49.8 110.4 18.1 45 -2.6 53 -3.0 0 0.0 0 0.0 13 49
50 186 MET M H H X TS+ 0 0 -51.3 -52.5 -179.9 46.9 113.9 24.5 46 -2.7 54 -0.5 0 0.0 0 0.0 11 41
51 187 ASN N H H < > TS+ 0 0 -56.1 -51.5 179.1 45.7 114.3 32.4 47 -2.4 54 -0.7 0 0.0 0 0.0 8 34
52 188 LEU L H H < 3 TS+ 0 0 -65.3 -33.2 168.8 62.3 106.0 36.6 48 -2.7 0 0.0 0 0.0 0 0.0 9 41
53 189 ALA A H H < 3 TS+ 0 0 -59.9 -24.0 179.0 111.7 77.4 46.5 49 -3.0 0 0.0 0 0.0 0 0.0 13 44
54 190 ARG R h < < T + 0 0 -61.1 119.0 173.5 152.7 38.1 114.3 51 -0.7 0 0.0 50 -0.5 0 0.0 10 31
55 191 GLY G - 0 0 -123.6 -165.2 172.1 -80.4 62.9 129.0 57 -0.6 0 0.0 0 0.0 0 0.0 8 27
56 192 ARG R S S S+ 0 0 -82.3 16.7 -177.3 54.7 108.7 71.9 0 0.0 0 0.0 0 0.0 0 0.0 4 16
57 193 GLU E S S S- 0 0 -135.5 171.1 162.3 -66.1 108.3 143.9 0 0.0 55 -0.6 0 0.0 0 0.0 6 22
58 194 TYR Y S S S+ 0 0 -52.0 105.8 -170.5 113.4 87.4 121.2 0 0.0 0 0.0 0 0.0 0 0.0 9 24
59 195 SER S t > T + 0 0 -148.8 -73.4 -176.9 40.7 66.5 83.4 0 0.0 62 -1.2 0 0.0 0 0.0 12 31
60 196 ALA A T T 3 TS+ 0 0 -62.6 -30.8 -170.8 48.5 117.2 36.2 0 0.0 0 0.0 0 0.0 0 0.0 13 35
61 197 MET M T T 3 TS+ 0 0 -100.0 6.9 178.2 94.3 83.6 66.3 0 0.0 0 0.0 0 0.0 0 0.0 7 30
62 198 GLU E S t < TS- 0 0 -61.7 -56.5 174.3 -17.4 101.3 13.2 59 -1.2 0 0.0 0 0.0 0 0.0 8 32
63 199 ARG R S S S- 0 0 -140.3 169.5 174.1 -75.0 85.5 158.5 0 0.0 0 0.0 0 0.0 0 0.0 8 31
64 200 SER S h > T - 0 0 -59.6 152.8 -178.7 -117.0 44.8 105.3 0 0.0 68 -2.1 0 0.0 0 0.0 7 34
65 201 ILE I H H > TS+ 0 0 -62.0 -42.3 -175.7 52.5 114.5 28.7 0 0.0 69 -2.6 0 0.0 0 0.0 10 45
66 202 ASP D H H > TS+ 0 0 -64.1 -38.2 174.1 48.4 110.1 31.1 0 0.0 70 -2.1 0 0.0 0 0.0 6 40
67 203 VAL V H H > TS+ 0 0 -67.4 -37.4 173.4 50.7 111.2 26.8 0 0.0 71 -2.6 0 0.0 0 0.0 8 34
68 204 GLN Q H H X TS+ 0 0 -64.6 -45.4 179.6 49.0 111.0 24.9 64 -2.1 72 -2.8 0 0.0 0 0.0 12 49
69 205 ILE I H H X TS+ 0 0 -59.8 -43.0 179.3 49.8 111.1 27.6 65 -2.6 73 -2.9 0 0.0 0 0.0 11 56
70 206 SER S H H X TS+ 0 0 -62.5 -48.5 173.8 46.8 112.4 22.1 66 -2.1 74 -1.9 0 0.0 0 0.0 9 40
71 207 ARG R H H X TS+ 0 0 -59.7 -44.7 174.6 49.2 112.9 22.4 67 -2.6 75 -1.7 0 0.0 0 0.0 9 35
72 208 LEU L H H X TS+ 0 0 -61.4 -37.6 176.5 51.9 110.3 21.2 68 -2.8 76 -2.7 0 0.0 0 0.0 10 55
73 209 ARG R H H X TS+ 0 0 -66.8 -40.1 179.6 51.1 107.6 27.6 69 -2.9 77 -2.3 0 0.0 0 0.0 11 42
74 210 ARG R H H < TS+ 0 0 -69.7 -24.9 170.6 46.0 114.7 30.3 70 -1.9 0 0.0 0 0.0 0 0.0 10 32
75 211 MET M H H < TS+ 0 0 -76.8 -44.3 -165.7 22.7 127.3 28.8 71 -1.7 0 0.0 0 0.0 0 0.0 6 41
76 212 VAL V H H < TS+ 0 0 -110.1 -12.0 -164.1 81.3 102.8 53.0 72 -2.7 0 0.0 0 0.0 0 0.0 8 49
77 213 GLU E h < T - 0 0 -110.1 139.9 166.2 -146.1 59.8 144.1 73 -2.3 0 0.0 0 0.0 0 0.0 11 35
78 214 GLU E S S S+ 0 0 -62.2 -38.3 173.9 17.2 104.3 31.5 0 0.0 0 0.0 0 0.0 0 0.0 6 23
79 215 ASP D t > T - 0 0 -135.5 108.7 -178.7 -162.3 68.3 155.1 0 0.0 82 -1.6 0 0.0 0 0.0 7 20
80 216 PRO P T T 3 TS+ 0 0 -59.5 -25.4 174.0 61.5 93.1 36.5 0 0.0 0 0.0 0 0.0 0 0.0 9 24
81 217 ALA A T T 3 TS+ 0 0 -70.2 -25.2 176.7 29.3 115.7 45.0 0 0.0 0 0.0 0 0.0 0 0.0 4 23
82 218 HIS H S t < TS- 0 0 -134.2 70.2 -165.9 -165.7 91.3 134.0 79 -1.6 0 0.0 0 0.0 0 0.0 5 24
83 219 PRO P - 0 0 -71.8 142.3 172.3 -172.8 19.4 113.7 0 0.0 0 0.0 0 0.0 0 0.0 11 31
84 220 ARG R S S S+ 0 0 -90.4 -47.4 -170.6 26.3 83.9 36.8 0 0.0 0 0.0 0 0.0 0 0.0 7 35
85 221 TYR Y S e S+ 0 0 -91.8 -42.2 179.1 45.1 123.3 33.0 0 0.0 97 -2.4 0 0.0 87 -0.7 12 48
86 222 ILE I E E BD S+ 96 0 -108.4 88.7 -170.0 177.8 82.5 150.2 0 0.0 0 0.0 0 0.0 0 0.0 12 55
87 223 GLN Q E E BD - 95 0 -97.3 157.1 179.4 -123.4 26.6 124.0 95 -2.4 95 -2.6 85 -0.7 0 0.0 10 48
88 224 THR T E E BD - 94 0 -100.6 136.7 175.7 -155.9 12.7 146.0 0 0.0 90 -0.6 0 0.0 0 0.0 7 37
89 225 VAL V E E >BD > T - 93 0 -115.8 114.2 -167.0 -123.3 28.2 170.1 93 -2.7 92 -1.9 0 0.0 93 -1.3 9 28
90 226 TRP W T T 4 3 TS+ 0 0 -62.4 138.8 169.5 12.6 91.8 100.7 88 -0.6 0 0.0 0 0.0 0 0.0 5 17
91 227 GLY G T T 4 3 TS+ 0 0 95.9 -14.5 -152.9 51.8 130.9 62.6 0 0.0 0 0.0 0 0.0 0 0.0 4 14
92 228 LEU L T T 4 < TS- 0 0 -128.2 -77.0 -163.2 -96.1 95.3 49.7 89 -1.9 0 0.0 0 0.0 0 0.0 8 23
93 229 GLY G E E 5555< 5-turns
3-turns >33< >33< >33X33< >33< >33< >33< >33< 3-turns
bridge-2 BBBB CCC A bridge-2
bridge-1 AAA AAA BBBB CCC A DDDD DDDD bridge-1
sheets AAA AAAA AAAA AAA BBBB BBBB sheets
4-turns >444< >>>>XXXXXX<<<< >>>>XX<<<< >>>>XXXXXX<<<< >444< 4-turns
summary EEETeEEEETTTTEEEEeTEEE hHHHHHHHHHHHHhTTt BhHHHHHHHHh SSStTTtShHHHHHHHHHHHHhStTTt SeEEEETTTEEEEe summary
sequence VIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD sequence
10 20 30 40 50 60 70 80 90