Secondary structure calculation program - copyright by David Keith Smith, 1989
1mnmC.pdb
1MNM COMPLEX (TRANSCRIPTION/HOMEOBOX/DNA) MOL_ID: 1; MOL_ID: 1;
Sequence length - 77
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 C 113 GLY G 0 0 999.9 -120.5 -179.6 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 2 9
2 C 114 LEU L - 0 0 -73.1 146.3 179.3 -126.9 999.9 112.4 0 0.0 0 0.0 0 0.0 0 0.0 3 11
3 C 115 VAL V - 0 0 -96.4 128.3 179.5 -164.4 23.8 144.0 0 0.0 0 0.0 0 0.0 0 0.0 7 16
4 C 116 PHE F e - 0 0 -113.7 141.6 178.7 -166.3 11.6 156.8 0 0.0 16 -1.7 0 0.0 0 0.0 6 17
5 C 117 ASN N E E AA - 15 0 -127.8 82.9 -178.2 -175.1 18.7 137.9 0 0.0 0 0.0 0 0.0 0 0.0 8 22
6 C 118 VAL V E E AA - 14 0 -91.0 127.5 178.4 -166.6 16.5 132.8 14 -1.2 14 -2.0 0 0.0 8 -0.6 7 18
7 C 119 VAL V E E AA - 13 0 -107.2 109.4 179.5 -156.4 18.7 163.0 0 0.0 0 0.0 0 0.0 0 0.0 9 17
8 C 120 THR T e > T - 0 0 -80.1 172.8 -178.4 -93.6 35.4 109.1 12 -2.1 11 -1.6 6 -0.6 0 0.0 7 11
9 C 121 GLN Q T T 3 TS+ 0 0 -61.9 -21.7 178.8 70.6 121.5 42.9 0 0.0 0 0.0 0 0.0 0 0.0 5 9
10 C 122 ASP D T T 3 TS- 0 0 -77.3 12.1 179.3 -115.5 115.1 73.1 0 0.0 0 0.0 0 0.0 0 0.0 5 9
11 C 123 MET M S t < TS+ 0 0 65.1 12.3 179.9 129.1 75.2 57.5 8 -1.6 0 0.0 0 0.0 0 0.0 6 14
12 C 124 ILE I e - 0 0 -99.9 140.3 179.2 -142.0 49.0 140.2 0 0.0 8 -2.1 0 0.0 0 0.0 7 20
13 C 125 ASN N E E AA - 7 0 -102.8 144.1 179.0 -178.3 16.4 143.8 0 0.0 0 0.0 0 0.0 0 0.0 8 25
14 C 126 LYS K E E AA - 6 0 -142.8 105.6 -179.1 -172.8 11.8 152.2 6 -2.0 6 -1.2 0 0.0 0 0.0 7 24
15 C 127 SER S E E AA - 5 0 -106.7 151.5 -180.0 -120.8 33.5 139.6 0 0.0 0 0.0 0 0.0 0 0.0 9 25
16 C 128 THR T S e S- 0 0 -50.5 -44.5 -179.4 -3.5 92.8 31.4 4 -1.7 0 0.0 0 0.0 0 0.0 7 18
17 C 129 LYS K S S S- 0 0 -150.8 160.0 179.3 -87.5 83.3 164.0 0 0.0 0 0.0 0 0.0 0 0.0 5 22
18 C 130 PRO P - 0 0 -68.0 138.7 -178.8 -164.2 51.3 120.4 0 0.0 0 0.0 0 0.0 0 0.0 6 28
19 C 131 TYR Y t > T - 0 0 -132.2 154.3 179.1 -94.4 25.1 158.6 0 0.0 22 -1.6 0 0.0 0 0.0 5 24
20 C 132 ARG R T T 3 TS+ 0 0 -64.2 131.1 -179.8 17.6 111.1 115.5 0 0.0 0 0.0 0 0.0 0 0.0 4 17
21 C 133 GLY G T T 3 TS+ 0 0 82.0 13.8 178.9 130.2 90.0 49.8 0 0.0 23 -0.8 0 0.0 0 0.0 4 15
22 C 134 HIS H t < T - 0 0 -107.3 100.4 -179.2 -143.7 49.8 148.8 19 -1.6 0 0.0 0 0.0 0 0.0 6 25
23 C 135 ARG R - 0 0 -53.4 164.3 176.5 -121.2 8.2 83.2 21 -0.8 0 0.0 0 0.0 0 0.0 4 30
24 C 136 PHE F - 0 0 -97.0 179.0 179.1 -75.5 46.1 115.4 0 0.0 0 0.0 0 0.0 0 0.0 6 39
25 C 137 THR T h > T - 0 0 -77.8 152.6 179.2 -117.8 36.3 118.0 0 0.0 29 -2.3 0 0.0 0 0.0 6 29
26 C 138 LYS K H H > TS+ 0 0 -59.0 -24.6 178.8 51.9 118.9 40.6 0 0.0 30 -1.1 0 0.0 0 0.0 6 20
27 C 139 GLU E H H > TS+ 0 0 -75.5 -53.5 -180.0 47.8 108.1 16.5 0 0.0 31 -1.9 0 0.0 0 0.0 6 22
28 C 140 ASN N H H > TS+ 0 0 -57.1 -34.2 179.4 53.6 110.2 36.3 0 0.0 32 -2.3 0 0.0 0 0.0 9 34
29 C 141 VAL V H H X TS+ 0 0 -69.4 -38.5 179.5 51.4 106.5 27.0 25 -2.3 33 -2.5 0 0.0 0 0.0 9 30
30 C 142 ARG R H H X TS+ 0 0 -64.9 -36.2 179.7 48.3 111.7 28.9 26 -1.1 34 -2.1 0 0.0 0 0.0 8 25
31 C 143 ILE I H H X TS+ 0 0 -68.5 -46.4 179.5 44.6 114.3 23.8 27 -1.9 35 -1.6 0 0.0 0 0.0 11 35
32 C 144 LEU L H H X TS+ 0 0 -67.7 -33.2 179.7 49.7 114.8 33.5 28 -2.3 36 -1.7 0 0.0 0 0.0 11 46
33 C 145 GLU E H H X TS+ 0 0 -73.4 -38.9 179.6 53.2 107.5 29.1 29 -2.5 37 -1.9 0 0.0 0 0.0 8 42
34 C 146 SER S H H X TS+ 0 0 -62.7 -41.3 179.0 50.4 108.5 27.9 30 -2.1 38 -2.4 0 0.0 0 0.0 8 31
35 C 147 TRP W H H X TS+ 0 0 -60.8 -50.2 -180.0 49.3 110.4 17.2 31 -1.6 39 -2.9 0 0.0 0 0.0 9 39
36 C 148 PHE F H H < TS+ 0 0 -58.2 -34.9 179.6 52.6 110.4 33.6 32 -1.7 0 0.0 0 0.0 0 0.0 10 35
37 C 149 ALA A H H < > TS+ 0 0 -67.5 -48.3 179.8 40.8 114.1 20.4 33 -1.9 40 -0.9 0 0.0 0 0.0 7 25
38 C 150 LYS K H H < > TS+ 0 0 -64.4 -57.1 -179.7 40.1 121.5 12.7 34 -2.4 41 -0.5 0 0.0 0 0.0 7 24
39 C 151 ASN N T h < 3 TS+ 0 0 -85.6 36.6 -179.3 126.5 79.9 94.9 35 -2.9 0 0.0 0 0.0 0 0.0 8 26
40 C 152 ILE I T T < T + 0 0 -63.0 -38.6 -179.8 58.8 64.7 29.3 37 -0.9 0 0.0 0 0.0 0 0.0 8 25
41 C 153 GLU E S t < TS+ 0 0 -60.9 -34.8 178.2 19.4 125.1 34.0 38 -0.5 0 0.0 0 0.0 0 0.0 5 18
42 C 154 ASN N S S S- 0 0 -139.8 85.3 -179.4 -179.0 72.3 138.0 0 0.0 0 0.0 0 0.0 0 0.0 6 23
43 C 155 PRO P + 0 0 -60.7 -13.4 -178.7 108.7 50.5 58.2 0 0.0 45 -0.7 0 0.0 0 0.0 9 32
44 C 156 TYR Y - 0 0 -77.7 109.9 -179.2 -132.8 69.1 128.8 0 0.0 0 0.0 0 0.0 0 0.0 5 34
45 C 157 LEU L - 0 0 -62.5 151.2 179.0 -150.3 16.1 98.2 43 -0.7 0 0.0 0 0.0 0 0.0 9 36
46 C 158 ASP D h > T - 0 0 -114.3 175.1 -178.3 -91.4 35.9 130.8 0 0.0 50 -2.4 0 0.0 0 0.0 6 25
47 C 159 THR T H H > TS+ 0 0 -59.0 -32.5 179.4 44.4 125.9 37.0 0 0.0 51 -1.4 0 0.0 0 0.0 6 21
48 C 160 LYS K H H > TS+ 0 0 -76.0 -55.0 -179.8 46.7 114.0 14.3 0 0.0 52 -2.1 0 0.0 0 0.0 6 18
49 C 161 GLY G H H > TS+ 0 0 -55.8 -33.3 178.8 51.4 113.4 37.6 0 0.0 53 -1.6 0 0.0 0 0.0 8 35
50 C 162 LEU L H H X TS+ 0 0 -69.0 -49.5 179.8 52.4 107.0 20.6 46 -2.4 54 -1.8 0 0.0 0 0.0 12 36
51 C 163 GLU E H H X TS+ 0 0 -53.6 -46.1 180.0 52.4 107.4 29.0 47 -1.4 55 -1.7 0 0.0 0 0.0 8 25
52 C 164 ASN N H H X > TS+ 0 0 -54.9 -59.4 -179.7 49.5 108.3 12.7 48 -2.1 56 -3.0 0 0.0 55 -0.9 8 29
53 C 165 LEU L H H X 3 TS+ 0 0 -50.6 -37.8 179.4 55.1 107.7 37.6 49 -1.6 57 -2.8 0 0.0 0 0.0 13 40
54 C 166 MET M H H X 3 TS+ 0 0 -66.3 -38.8 178.9 42.1 112.6 29.1 50 -1.8 58 -1.5 0 0.0 0 0.0 12 32
55 C 167 LYS K H H < < TS+ 0 0 -71.5 -47.3 -179.1 45.8 119.0 17.8 51 -1.7 0 0.0 52 -0.9 0 0.0 8 22
56 C 168 ASN N H H < TS+ 0 0 -65.1 -37.7 -178.3 24.1 128.1 36.6 52 -3.0 0 0.0 0 0.0 0 0.0 7 27
57 C 169 THR T H H < TS- 0 0 -100.3 -31.5 -178.5 -137.6 87.5 42.3 53 -2.8 0 0.0 0 0.0 0 0.0 8 33
58 C 170 SER S h < T + 0 0 77.3 16.8 179.4 134.8 60.3 50.8 54 -1.5 0 0.0 0 0.0 0 0.0 7 32
59 C 171 LEU L - 0 0 -97.3 144.6 -178.3 -98.6 59.3 139.8 0 0.0 0 0.0 0 0.0 0 0.0 9 37
60 C 172 SER S h > T - 0 0 -61.2 162.8 179.8 -108.6 28.0 89.5 0 0.0 64 -2.1 0 0.0 0 0.0 7 29
61 C 173 ARG R H H > TS+ 0 0 -56.5 -40.7 -179.7 53.2 121.0 28.7 0 0.0 65 -2.9 0 0.0 0 0.0 8 29
62 C 174 ILE I H H > TS+ 0 0 -64.1 -43.0 179.8 47.7 108.7 26.8 0 0.0 66 -2.2 0 0.0 0 0.0 6 30
63 C 175 GLN Q H H > TS+ 0 0 -68.3 -35.3 179.1 45.2 115.4 32.7 0 0.0 67 -2.2 0 0.0 0 0.0 8 37
64 C 176 ILE I H H X TS+ 0 0 -70.9 -52.6 179.7 47.7 113.9 17.3 60 -2.1 68 -2.6 0 0.0 0 0.0 12 42
65 C 177 LYS K H H X TS+ 0 0 -54.5 -40.9 -179.9 46.3 116.6 29.6 61 -2.9 69 -1.8 0 0.0 0 0.0 10 37
66 C 178 ASN N H H X TS+ 0 0 -70.6 -46.4 179.5 49.4 110.5 27.8 62 -2.2 70 -3.0 0 0.0 0 0.0 8 36
67 C 179 TRP W H H X TS+ 0 0 -59.5 -47.4 179.7 48.2 113.4 20.2 63 -2.2 71 -0.9 0 0.0 0 0.0 9 44
68 C 180 VAL V H H X TS+ 0 0 -58.6 -45.0 179.2 47.2 113.5 26.5 64 -2.6 72 -2.1 0 0.0 0 0.0 13 45
69 C 181 SER S H H X TS+ 0 0 -62.5 -48.2 178.9 49.0 112.1 21.5 65 -1.8 73 -1.9 0 0.0 0 0.0 8 30
70 C 182 ASN N H H X TS+ 0 0 -65.8 -15.8 179.5 54.9 110.6 49.5 66 -3.0 74 -1.2 0 0.0 0 0.0 8 29
71 C 183 ARG R H H X TS+ 0 0 -86.1 -41.0 178.4 49.1 104.1 29.7 67 -0.9 75 -2.5 0 0.0 0 0.0 8 35
72 C 184 ARG R H H X TS+ 0 0 -63.0 -37.0 179.2 55.8 110.2 27.8 68 -2.1 76 -1.7 0 0.0 0 0.0 9 27
73 C 185 ARG R H H < TS+ 0 0 -57.3 -50.0 179.8 42.9 110.1 21.1 69 -1.9 0 0.0 0 0.0 0 0.0 8 18
74 C 186 LYS K H H < > TS+ 0 0 -65.7 -34.0 -179.1 62.8 108.1 32.5 70 -1.2 77 -1.5 0 0.0 0 0.0 7 17
75 C 187 GLU E H H < 3 TS+ 0 0 -61.3 -39.8 178.6 60.3 91.7 32.0 71 -2.5 0 0.0 0 0.0 0 0.0 6 24
76 C 188 LYS K T h < 3 T 0 0 -70.1 8.5 -179.4 999.9 999.9 67.1 72 -1.7 0 0.0 0 0.0 0 0.0 5 15
77 C 189 THR T t < T 0 0 73.7 999.9 999.9 999.9 999.9 23.0 74 -1.5 0 0.0 0 0.0 0 0.0 4 8
1mnmC.pdb
1MNM COMPLEX (TRANSCRIPTION/HOMEOBOX/DNA) MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand EEE TTS EEESS TT HHHHHHHHHHHHHTTSS HHHHHHHHHHH HHHHHHHHHHHHHHHT Kabs/Sand
chirality -------+-+--------++----++++++++++++++++-+---++++++++++-+--+++++++++++++++ chirality
bends SSS SS SS SSSSSSSSSSSSSS SS SSSSSSSSSSS SSSSSSSSSSSSSSS bends
turns TTTT TTTT TTTTTTTTTTTTTTTTT TTTTTTTTTTTTT TTTTTTTTTTTTTTTTTT turns
5-turns 5-turns
3-turns >33< >33< >>3<< >33< >33< 3-turns
bridge-2 bridge-2
bridge-1 AAA AAA bridge-1
sheets AAA AAA sheets
4-turns >>>>XXXXXXX<<<< >>>>XXXXX<<<< >>>>XXXXXXXXX<<<< 4-turns
summary eEEEeTTteEEEeS tTTt hHHHHHHHHHHHHHhTtS hHHHHHHHHHHHh hHHHHHHHHHHHHHHHht summary
sequence GLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT sequence
10 20 30 40 50 60 70