Secondary structure calculation program - copyright by David Keith Smith, 1989
1mnmA.pdb
1MNM COMPLEX (TRANSCRIPTION/HOMEOBOX/DNA) MOL_ID: 1; MOL_ID: 1;
Sequence length - 85
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 15 GLN Q 0 0 999.9 40.2 -179.2 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 2 4
2 A 16 LYS K - 0 0 68.6 113.6 179.9 -107.2 999.9 36.4 0 0.0 0 0.0 0 0.0 0 0.0 3 5
3 A 17 GLU E - 0 0 -69.8 143.3 179.9 -161.1 30.1 115.8 0 0.0 0 0.0 0 0.0 0 0.0 4 6
4 A 18 ARG R + 0 0 -130.9 114.6 179.6 162.8 22.9 165.7 0 0.0 0 0.0 0 0.0 0 0.0 4 7
5 A 19 ARG R + 0 0 -120.9 35.1 -179.8 143.8 30.8 94.3 0 0.0 0 0.0 0 0.0 0 0.0 4 10
6 A 20 LYS K - 0 0 -67.3 174.9 179.9 -153.9 33.2 89.0 0 0.0 0 0.0 0 0.0 0 0.0 4 11
7 A 21 ILE I - 0 0 -156.1 131.8 177.8 -135.4 10.4 164.6 0 0.0 0 0.0 0 0.0 0 0.0 4 17
8 A 22 GLU E - 0 0 -79.5 159.8 179.8 -104.1 37.4 120.4 0 0.0 10 -1.5 0 0.0 0 0.0 4 12
9 A 23 ILE I S S S+ 0 0 -91.3 75.9 -179.8 123.8 75.7 123.4 0 0.0 0 0.0 0 0.0 0 0.0 4 13
10 A 24 LYS K S S S- 0 0 -130.3 153.7 178.9 -80.7 72.4 157.8 8 -1.5 0 0.0 0 0.0 0 0.0 4 13
11 A 25 PHE F - 0 0 -53.9 133.3 -179.7 -124.0 47.3 105.1 0 0.0 13 -0.8 0 0.0 0 0.0 4 17
12 A 26 ILE I - 0 0 -88.4 110.3 -178.6 -168.7 22.7 140.6 0 0.0 0 0.0 0 0.0 0 0.0 7 20
13 A 27 GLU E + 0 0 -63.7 -50.6 179.7 84.7 64.1 23.4 11 -0.8 0 0.0 0 0.0 0 0.0 5 16
14 A 28 ASN N S h > TS- 0 0 -59.8 120.1 -179.6 -148.2 71.7 114.9 0 0.0 18 -1.9 0 0.0 0 0.0 6 14
15 A 29 LYS K H H > TS+ 0 0 -56.8 -44.6 -179.0 50.8 93.3 26.7 0 0.0 19 -2.3 0 0.0 0 0.0 7 16
16 A 30 THR T H H > TS+ 0 0 -60.6 -53.9 -179.9 41.9 113.4 19.5 0 0.0 20 -1.9 0 0.0 0 0.0 6 16
17 A 31 ARG R H H > TS+ 0 0 -65.6 -28.4 179.7 52.8 115.2 37.4 0 0.0 21 -1.8 0 0.0 0 0.0 8 21
18 A 32 ARG R H H X TS+ 0 0 -75.3 -39.6 179.5 51.0 107.1 29.5 14 -1.9 22 -1.7 0 0.0 0 0.0 10 22
19 A 33 HIS H H H X TS+ 0 0 -64.7 -42.3 179.7 49.1 110.4 25.3 15 -2.3 23 -2.2 0 0.0 0 0.0 8 23
20 A 34 VAL V H H X TS+ 0 0 -61.8 -51.3 179.9 48.8 111.2 13.5 16 -1.9 24 -2.6 0 0.0 0 0.0 8 21
21 A 35 THR T H H X TS+ 0 0 -58.1 -33.2 179.5 54.2 109.6 34.8 17 -1.8 25 -2.5 0 0.0 0 0.0 8 28
22 A 36 PHE F H H X TS+ 0 0 -65.6 -51.4 -179.6 45.6 109.9 15.8 18 -1.7 26 -2.9 0 0.0 0 0.0 8 33
23 A 37 SER S H H X TS+ 0 0 -57.1 -49.4 -179.8 46.7 115.5 22.3 19 -2.2 27 -2.1 0 0.0 0 0.0 8 27
24 A 38 LYS K H H X TS+ 0 0 -62.3 -47.4 179.5 38.6 119.0 22.7 20 -2.6 28 -2.1 0 0.0 0 0.0 8 20
25 A 39 ARG R H H X TS+ 0 0 -76.1 -28.3 179.3 59.1 110.6 35.7 21 -2.5 29 -2.2 0 0.0 0 0.0 8 29
26 A 40 LYS K H H X TS+ 0 0 -61.6 -49.1 179.3 39.9 113.6 13.1 22 -2.9 30 -1.9 0 0.0 0 0.0 9 29
27 A 41 HIS H H H X TS+ 0 0 -64.2 -43.9 -179.4 54.3 113.8 26.6 23 -2.1 31 -1.6 0 0.0 0 0.0 8 25
28 A 42 GLY G H H X TS+ 0 0 -63.0 -31.4 -179.7 42.3 112.7 37.3 24 -2.1 32 -1.6 0 0.0 0 0.0 8 22
29 A 43 ILE I H H X TS+ 0 0 -86.4 -30.4 177.9 56.7 109.1 39.2 25 -2.2 33 -1.9 0 0.0 0 0.0 8 27
30 A 44 MET M H H X TS+ 0 0 -67.8 -29.1 178.3 48.2 110.5 34.6 26 -1.9 34 -1.2 0 0.0 0 0.0 10 31
31 A 45 LYS K H H X TS+ 0 0 -73.1 -51.6 179.4 50.0 109.5 18.2 27 -1.6 35 -2.6 0 0.0 0 0.0 8 27
32 A 46 LYS K H H X TS+ 0 0 -56.0 -34.7 -179.7 53.3 109.5 36.4 28 -1.6 36 -2.0 0 0.0 0 0.0 8 28
33 A 47 ALA A H H X TS+ 0 0 -69.5 -40.1 178.2 46.9 110.1 31.2 29 -1.9 37 -1.8 0 0.0 0 0.0 11 31
34 A 48 PHE F H H X TS+ 0 0 -66.8 -50.1 179.0 48.7 112.1 21.4 30 -1.2 38 -1.9 0 0.0 0 0.0 9 31
35 A 49 GLU E H H X TS+ 0 0 -56.7 -43.2 179.2 51.1 111.7 24.1 31 -2.6 39 -2.8 0 0.0 0 0.0 8 22
36 A 50 LEU L H H X TS+ 0 0 -62.1 -43.0 -179.7 52.1 107.5 24.9 32 -2.0 40 -1.7 0 0.0 0 0.0 10 21
37 A 51 SER S H H X >TS+ 0 0 -62.4 -35.8 -179.3 38.8 117.6 28.0 33 -1.8 42 -0.9 0 0.0 41 -0.7 12 24
38 A 52 VAL V H H < 5TS+ 0 0 -79.0 -57.2 179.9 50.5 112.6 16.9 34 -1.9 0 0.0 0 0.0 0 0.0 8 20
39 A 53 LEU L H H < 5TS+ 0 0 -50.3 -40.5 -178.1 23.4 129.5 30.4 35 -2.8 0 0.0 0 0.0 0 0.0 6 14
40 A 54 THR T H H < 5TS- 0 0 -107.8 -4.6 -180.0 -130.8 98.1 62.1 36 -1.7 0 0.0 0 0.0 0 0.0 6 13
41 A 55 GLY G T h < 5T + 0 0 53.2 56.7 -179.5 139.5 57.2 18.6 37 -0.7 0 0.0 0 0.0 0 0.0 7 18
42 A 56 THR T t T - 0 0 -84.2 163.5 178.3 -103.9 28.4 115.8 54 -2.5 53 -2.9 0 0.0 0 0.0 8 28
51 A 65 GLU E T T 3 TS+ 0 0 -53.2 -32.3 179.3 60.8 124.5 35.3 0 0.0 0 0.0 0 0.0 0 0.0 5 26
52 A 66 THR T T T 3 TS- 0 0 -72.5 -9.1 -180.0 -108.0 123.3 57.0 0 0.0 0 0.0 0 0.0 0 0.0 5 19
53 A 67 GLY G t < T + 0 0 90.2 16.2 178.8 147.3 68.6 48.0 50 -2.9 0 0.0 0 0.0 0 0.0 6 21
54 A 68 LEU L e - 0 0 -87.5 131.1 179.9 -142.0 42.0 138.3 0 0.0 50 -2.5 0 0.0 56 -1.0 7 23
55 A 69 VAL V E E AA - 49 0 -98.1 92.8 177.7 -168.8 16.8 140.7 0 0.0 0 0.0 0 0.0 0 0.0 8 33
56 A 70 TYR Y E E AA - 48 0 -78.0 134.0 -178.0 -178.9 16.3 129.3 48 -2.6 48 -3.2 54 -1.0 0 0.0 8 35
57 A 71 THR T E E AA - 47 0 -137.4 158.6 174.7 -166.5 26.0 155.6 0 0.0 0 0.0 0 0.0 0 0.0 9 39
58 A 72 PHE F E E AA + 46 0 -141.3 129.6 -179.9 172.5 21.6 164.0 46 -1.7 46 -2.3 0 0.0 0 0.0 11 37
59 A 73 SER S E E AA - 45 0 -145.3 147.1 176.2 -137.1 28.7 175.3 0 0.0 0 0.0 0 0.0 0 0.0 11 34
60 A 74 THR T e > > T - 0 0 -88.1 164.3 -179.6 -86.2 52.8 121.5 44 -1.5 63 -1.0 0 0.0 64 -0.9 10 29
61 A 75 PRO P T T 4 3 TS+ 0 0 -41.7 -45.4 -178.8 51.5 124.2 38.1 0 0.0 0 0.0 0 0.0 0 0.0 6 22
62 A 76 LYS K T T 4 3 TS+ 0 0 -67.1 -34.8 -179.0 41.3 114.8 34.2 0 0.0 0 0.0 0 0.0 0 0.0 7 22
63 A 77 PHE F T T 4 X TS+ 0 0 -91.0 -4.7 -178.0 95.0 88.3 61.7 60 -1.0 66 -1.6 0 0.0 0 0.0 11 27
64 A 78 GLU E T h X > TS+ 0 0 -57.2 -40.4 179.9 63.4 73.3 29.0 60 -0.9 67 -1.7 0 0.0 68 -0.8 9 28
65 A 79 PRO P H H > 3 TS+ 0 0 -59.6 -15.7 179.4 66.6 93.5 45.3 0 0.0 69 -1.6 0 0.0 0 0.0 8 24
66 A 80 ILE I H H 4 < TS+ 0 0 -74.9 -28.8 179.6 31.4 111.0 36.7 63 -1.6 0 0.0 0 0.0 0 0.0 10 29
67 A 81 VAL V H H 4 < TS+ 0 0 -111.0 7.9 179.6 41.4 126.9 70.0 64 -1.7 0 0.0 0 0.0 0 0.0 9 32
68 A 82 THR T H H < TS+ 0 0 -123.4 -26.8 180.0 65.4 103.5 52.2 64 -0.8 0 0.0 0 0.0 0 0.0 8 25
69 A 83 GLN Q S h X TS- 0 0 -99.4 168.1 -178.4 -111.3 83.1 123.4 65 -1.6 73 -1.9 0 0.0 0 0.0 8 18
70 A 84 GLN Q H H > TS+ 0 0 -66.2 -44.2 -178.4 58.1 106.8 26.5 0 0.0 74 -2.7 0 0.0 0 0.0 7 15
71 A 85 GLU E H H > TS+ 0 0 -55.8 -47.8 179.5 34.5 115.8 25.2 0 0.0 75 -1.5 0 0.0 0 0.0 7 16
72 A 86 GLY G H H > TS+ 0 0 -72.3 -47.7 179.5 52.9 117.1 20.9 0 0.0 76 -2.2 0 0.0 0 0.0 11 24
73 A 87 ARG R H H X TS+ 0 0 -54.8 -40.5 179.3 49.5 110.4 30.4 69 -1.9 77 -2.1 0 0.0 0 0.0 11 30
74 A 88 ASN N H H X TS+ 0 0 -66.2 -45.3 179.5 49.9 109.8 24.6 70 -2.7 78 -2.5 0 0.0 0 0.0 8 18
75 A 89 LEU L H H X TS+ 0 0 -63.2 -34.0 179.1 50.4 111.2 32.9 71 -1.5 79 -2.4 0 0.0 0 0.0 8 19
76 A 90 ILE I H H X TS+ 0 0 -69.8 -46.9 178.8 45.6 111.8 21.1 72 -2.2 80 -1.8 0 0.0 0 0.0 8 31
77 A 91 GLN Q H H X TS+ 0 0 -61.3 -41.2 179.0 54.0 112.1 25.0 73 -2.1 81 -1.6 0 0.0 0 0.0 8 27
78 A 92 ALA A H H < > TS+ 0 0 -56.0 -54.4 -179.5 49.0 107.8 14.7 74 -2.5 81 -0.9 0 0.0 0 0.0 8 19
79 A 93 CYS C H H < > TS+ 0 0 -54.3 -38.8 -179.0 48.4 112.6 35.5 75 -2.4 82 -0.7 0 0.0 0 0.0 7 22
80 A 94 LEU L H H < 3 TS+ 0 0 -77.5 -23.5 179.7 66.0 98.8 46.1 76 -1.8 0 0.0 0 0.0 0 0.0 6 23
81 A 95 ASN N T h < < TS+ 0 0 -78.8 1.7 179.7 109.8 82.1 64.2 77 -1.6 0 0.0 78 -0.9 0 0.0 6 18
82 A 96 ALA A S t < TS- 0 0 -78.0 153.4 -179.8 -84.0 81.8 114.3 79 -0.7 0 0.0 0 0.0 0 0.0 6 12
83 A 97 PRO P - 0 0 -62.0 134.8 -179.2 -134.6 29.4 109.5 0 0.0 0 0.0 0 0.0 0 0.0 4 9
84 A 98 ASP D 0 0 -51.2 -65.2 179.7 999.9 999.9 23.3 0 0.0 0 0.0 0 0.0 0 0.0 3 9
85 A 99 ASP D 0 0 52.5 999.9 999.9 999.9 999.9 99.9 0 0.0 0 0.0 0 0.0 0 0.0 2 6
1mnmA.pdb
1MNM COMPLEX (TRANSCRIPTION/HOMEOBOX/DNA) MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand SS SHHHHHHHHHHHHHHHHHHHHHHHHHHT EEEEE TT EEEEE TTTTHHHHSHHHHHHHHHHHTS Kabs/Sand
chirality --++---+---+-+++++++++++++++++++++++++-+---+-+---+-+----+--++++++++-++++++++++++-- chirality
bends SS SSSSSSSSSSSSSSSSSSSSSSSSSSS SS SSSSSSSSSSSSSSSSSSSSSS bends
turns TTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT TTTTTTTTTTTTTTTTTTTTTTT turns
5-turns >5555< 5-turns
3-turns >33< >33X>3<< >>3<< 3-turns
bridge-2 bridge-2
bridge-1 AAAAA AAAAA bridge-1
sheets AAAAA AAAAA sheets
4-turns >>>>XXXXXXXXXXXXXXXXXXXX<<<< >444X>44>>XXXXX<<<< 4-turns
summary SS hHHHHHHHHHHHHHHHHHHHHHHHHHHht eEEEEEeTTteEEEEEeTTThHHHHhHHHHHHHHHHHht summary
sequence QKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNLIQACLNAPDD sequence
10 20 30 40 50 60 70 80