Secondary structure calculation program - copyright by David Keith Smith, 1989
1jyoE.pdb
1JYO CHAPERONE MOL_ID: 1; MOL_ID: 1;
Sequence length - 102
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 E 36 ASP D 0 0 999.9 -28.9 179.4 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 5 23
2 E 37 LYS K - 0 0 -152.9 158.8 -179.2 -105.2 999.9 169.5 0 0.0 0 0.0 0 0.0 0 0.0 7 21
3 E 38 ALA A - 0 0 -93.1 134.2 179.4 -161.9 25.9 136.6 0 0.0 0 0.0 0 0.0 0 0.0 10 26
4 E 39 TYR Y E E AA - 17 0 -116.7 127.3 178.8 -147.7 8.4 163.3 17 -2.8 17 -3.0 0 0.0 0 0.0 8 21
5 E 40 VAL V E E AA - 16 0 -94.5 128.5 179.7 -121.7 23.0 143.6 0 0.0 0 0.0 0 0.0 0 0.0 8 21
6 E 41 ALA A e - 0 0 -68.1 137.8 -179.9 -137.9 12.7 116.9 15 -3.2 0 0.0 0 0.0 0 0.0 9 17
7 E 42 PRO P S S S+ 0 0 -64.5 -38.6 179.5 47.5 87.2 28.3 0 0.0 0 0.0 0 0.0 0 0.0 4 14
8 E 43 GLU E S S S- 0 0 -108.4 146.2 -178.7 -106.0 92.9 145.9 0 0.0 0 0.0 0 0.0 0 0.0 6 13
9 E 44 LYS K - 0 0 -66.8 159.1 178.7 -145.4 20.0 98.0 0 0.0 0 0.0 0 0.0 0 0.0 9 13
10 E 45 PHE F B B A > TS- 13 0 -126.9 125.6 -178.7 -10.5 82.4 175.5 13 -3.4 13 -2.3 0 0.0 0 0.0 7 13
11 E 46 SER S T T 3 TS- 0 0 52.3 38.0 179.7 -57.3 130.1 29.3 0 0.0 0 0.0 0 0.0 0 0.0 4 10
12 E 47 SER S T T 3 TS+ 0 0 69.6 13.6 -179.7 107.1 120.6 52.2 0 0.0 0 0.0 0 0.0 0 0.0 5 10
13 E 48 LYS K B B A < TS- 10 0 -125.3 152.5 178.6 -104.1 79.9 154.6 10 -2.3 10 -3.4 0 0.0 0 0.0 6 12
14 E 49 VAL V - 0 0 -72.9 122.3 -179.2 -148.9 40.1 127.9 0 0.0 0 0.0 0 0.0 0 0.0 9 17
15 E 50 LEU L e - 0 0 -101.0 128.8 179.8 -178.7 17.5 147.5 0 0.0 6 -3.2 0 0.0 0 0.0 9 18
16 E 51 THR T E E AA - 5 0 -128.7 133.3 176.7 -148.5 20.7 170.5 0 0.0 18 -0.6 0 0.0 0 0.0 8 25
17 E 52 TRP W E E AA - 4 0 -97.8 119.3 -178.2 -156.7 8.9 153.7 4 -3.0 4 -2.8 0 0.0 0 0.0 8 24
18 E 53 LEU L - 0 0 -75.2 -2.9 179.8 -125.6 39.2 59.3 16 -0.6 0 0.0 0 0.0 0 0.0 7 31
19 E 54 GLY G - 0 0 84.6 175.4 179.2 -30.5 47.0 98.1 0 0.0 0 0.0 0 0.0 0 0.0 8 25
20 E 55 LYS K - 0 0 -66.7 141.6 179.6 -140.2 61.6 113.4 0 0.0 0 0.0 0 0.0 0 0.0 6 25
21 E 56 MET M - 0 0 -104.5 144.7 179.7 -105.5 22.2 144.4 0 0.0 0 0.0 0 0.0 0 0.0 8 35
22 E 57 PRO P - 0 0 -63.1 160.9 -179.5 -67.5 59.1 101.8 0 0.0 0 0.0 0 0.0 0 0.0 8 28
23 E 58 LEU L t > T - 0 0 -51.1 129.5 -177.8 -132.8 46.6 104.3 0 0.0 26 -1.0 0 0.0 0 0.0 6 24
24 E 59 PHE F T T 3 TS+ 0 0 -59.1 -29.1 -179.4 69.1 98.7 40.4 0 0.0 0 0.0 0 0.0 0 0.0 8 28
25 E 60 LYS K T T 3 TS+ 0 0 -59.4 -37.6 180.0 72.0 84.9 29.1 0 0.0 27 -2.3 0 0.0 0 0.0 5 23
26 E 61 ASN N h > X T + 0 0 -80.3 71.3 -178.5 178.4 69.2 118.1 23 -1.0 30 -2.1 0 0.0 29 -1.1 8 20
27 E 62 THR T H H > 3 TS+ 0 0 -42.2 -48.4 -179.4 47.1 75.0 36.4 25 -2.3 31 -2.3 0 0.0 0 0.0 7 25
28 E 63 GLU E H H > 3 TS+ 0 0 -70.5 -28.9 179.0 53.5 109.9 36.8 0 0.0 32 -2.2 0 0.0 0 0.0 6 20
29 E 64 VAL V H H > < TS+ 0 0 -69.9 -43.0 179.1 47.3 110.6 23.6 26 -1.1 33 -2.0 0 0.0 0 0.0 8 22
30 E 65 VAL V H H X TS+ 0 0 -60.6 -51.3 179.6 50.0 112.3 18.2 26 -2.1 34 -2.4 0 0.0 0 0.0 12 34
31 E 66 GLN Q H H X TS+ 0 0 -53.3 -49.1 -178.9 50.2 110.1 24.3 27 -2.3 35 -1.0 0 0.0 0 0.0 9 34
32 E 67 LYS K H H X TS+ 0 0 -60.9 -39.5 179.9 49.0 110.9 28.7 28 -2.2 36 -1.3 0 0.0 0 0.0 8 28
33 E 68 HIS H H H X TS+ 0 0 -67.6 -42.3 -179.7 61.3 102.5 25.4 29 -2.0 37 -0.7 0 0.0 0 0.0 10 33
34 E 69 THR T H H < TS+ 0 0 -55.3 -28.6 -179.9 46.8 107.3 39.0 30 -2.4 0 0.0 0 0.0 0 0.0 10 35
35 E 70 GLU E H H < TS+ 0 0 -82.9 -36.0 -178.5 57.3 105.8 32.5 31 -1.0 0 0.0 0 0.0 0 0.0 9 29
36 E 71 ASN N H H < TS+ 0 0 -75.2 -4.2 -179.6 84.6 93.7 60.5 32 -1.3 0 0.0 0 0.0 0 0.0 6 26
37 E 72 ILE I S h < TS- 0 0 -105.4 148.2 -179.0 -103.5 91.2 141.3 33 -0.7 39 -1.8 0 0.0 0 0.0 8 29
38 E 73 ARG R + 0 0 -68.6 84.4 179.0 132.3 68.8 116.4 0 0.0 0 0.0 0 0.0 0 0.0 6 27
39 E 74 VAL V - 0 0 -138.5 129.9 -179.3 -156.0 44.4 175.3 37 -1.8 0 0.0 0 0.0 0 0.0 6 30
40 E 75 GLN Q S S S+ 0 0 -67.6 -67.8 179.7 51.3 90.4 3.7 0 0.0 42 -2.7 0 0.0 0 0.0 4 21
41 E 76 ASP D h > T + 0 0 -72.9 71.7 -179.3 160.5 66.6 114.4 0 0.0 45 -2.1 0 0.0 0 0.0 6 20
42 E 77 GLN Q H H > TS+ 0 0 -65.3 -27.5 179.8 51.1 72.1 39.1 40 -2.7 46 -1.6 0 0.0 0 0.0 9 22
43 E 78 LYS K H H > TS+ 0 0 -79.9 -38.5 178.5 50.3 106.7 29.7 0 0.0 47 -1.2 0 0.0 0 0.0 6 21
44 E 79 ILE I H H > TS+ 0 0 -64.8 -43.1 176.0 60.2 108.9 22.5 0 0.0 48 -2.0 0 0.0 0 0.0 7 20
45 E 80 LEU L H H X TS+ 0 0 -59.4 -61.9 150.4 38.2 104.8 20.6 41 -2.1 49 -2.1 0 0.0 0 0.0 9 33
46 E 81 GLN Q H H X TS+ 0 0 -45.9 -31.6 177.7 60.5 112.3 31.0 42 -1.6 50 -3.3 0 0.0 0 0.0 10 36
47 E 82 THR T H H X TS+ 0 0 -61.4 -44.1 178.8 45.5 107.6 18.7 43 -1.2 51 -2.4 0 0.0 0 0.0 8 26
48 E 83 PHE F H H X TS+ 0 0 -62.1 -43.7 179.1 49.4 113.7 22.7 44 -2.0 52 -2.5 0 0.0 0 0.0 8 25
49 E 84 LEU L H H X TS+ 0 0 -64.2 -36.2 178.5 52.4 108.7 30.3 45 -2.1 53 -1.9 0 0.0 0 0.0 8 35
50 E 85 HIS H H H X TS+ 0 0 -64.2 -42.4 -179.5 49.4 110.3 23.1 46 -3.3 54 -2.2 0 0.0 0 0.0 8 31
51 E 86 ALA A H H X TS+ 0 0 -62.8 -45.9 179.4 48.4 110.5 22.3 47 -2.4 55 -1.2 0 0.0 0 0.0 8 23
52 E 87 LEU L H H < TS+ 0 0 -63.2 -35.2 -179.8 52.0 111.4 30.8 48 -2.5 0 0.0 0 0.0 0 0.0 8 26
53 E 88 THR T H H < > TS+ 0 0 -67.5 -44.1 -178.5 51.7 107.0 22.9 49 -1.9 56 -1.2 0 0.0 0 0.0 10 27
54 E 89 GLU E H H < > TS+ 0 0 -67.5 -22.9 -179.7 82.9 86.5 43.9 50 -2.2 57 -2.3 0 0.0 0 0.0 8 24
55 E 90 LYS K T h < 3 TS+ 0 0 -53.1 -27.1 -179.8 31.1 105.7 39.2 51 -1.2 0 0.0 0 0.0 0 0.0 7 19
56 E 91 TYR Y T T < TS+ 0 0 -123.7 34.4 179.0 124.0 96.4 94.5 53 -1.2 0 0.0 0 0.0 0 0.0 8 20
57 E 92 GLY G S h > < TS- 0 0 -81.6 -172.4 -179.4 -83.8 78.8 94.1 54 -2.3 61 -2.4 0 0.0 0 0.0 8 21
58 E 93 GLU E H H > TS+ 0 0 -58.9 -55.3 -179.3 50.0 126.3 18.0 0 0.0 62 -2.8 0 0.0 0 0.0 6 18
59 E 94 THR T H H > TS+ 0 0 -50.8 -48.0 -179.7 48.1 112.9 24.6 0 0.0 63 -2.2 0 0.0 0 0.0 6 16
60 E 95 ALA A H H > TS+ 0 0 -59.4 -52.3 -179.8 48.8 111.5 18.9 0 0.0 64 -1.6 0 0.0 0 0.0 10 18
61 E 96 VAL V H H X TS+ 0 0 -55.7 -44.4 -179.4 48.0 113.1 25.6 57 -2.4 65 -1.4 0 0.0 0 0.0 9 17
62 E 97 ASN N H H X TS+ 0 0 -67.2 -36.5 179.4 53.1 108.5 31.1 58 -2.8 66 -1.9 0 0.0 0 0.0 8 16
63 E 98 ASP D H H X TS+ 0 0 -68.8 -27.5 179.5 54.3 106.8 37.5 59 -2.2 67 -2.2 0 0.0 0 0.0 8 17
64 E 99 ALA A H H X TS+ 0 0 -73.5 -35.7 179.0 49.6 107.2 32.6 60 -1.6 68 -2.3 0 0.0 0 0.0 8 18
65 E 100 LEU L H H X TS+ 0 0 -69.4 -39.2 179.6 48.2 112.2 27.7 61 -1.4 69 -0.6 0 0.0 0 0.0 8 17
66 E 101 LEU L H H X > TS+ 0 0 -66.4 -45.7 179.0 50.4 110.9 21.8 62 -1.9 70 -2.5 0 0.0 69 -0.8 8 15
67 E 102 MET M H H X 3 TS+ 0 0 -56.8 -48.1 -179.5 50.4 109.6 20.2 63 -2.2 71 -3.3 0 0.0 0 0.0 8 14
68 E 103 SER S H H < 3 TS+ 0 0 -64.7 -16.3 179.9 50.9 111.6 47.5 64 -2.3 0 0.0 0 0.0 0 0.0 8 14
69 E 104 ARG R H H < < TS+ 0 0 -87.4 -39.1 179.6 41.4 114.0 32.9 66 -0.8 0 0.0 65 -0.6 0 0.0 7 13
70 E 105 ILE I H H < TS+ 0 0 -76.3 -35.3 -179.2 94.4 95.2 32.8 66 -2.5 0 0.0 0 0.0 0 0.0 6 12
71 E 106 ASN N h < T - 0 0 -66.6 115.4 178.7 -158.9 62.2 117.0 67 -3.3 73 -1.0 0 0.0 0 0.0 6 13
72 E 107 MET M - 0 0 -97.3 93.2 -178.8 -149.7 10.0 144.7 0 0.0 74 -4.1 0 0.0 0 0.0 6 14
73 E 108 ASN N + 0 0 -61.8 53.4 -179.5 177.4 30.0 100.0 71 -1.0 0 0.0 0 0.0 0 0.0 4 14
74 E 109 LYS K - 0 0 -64.1 142.5 180.0 -100.4 37.0 107.2 72 -4.1 0 0.0 0 0.0 0 0.0 6 13
75 E 110 PRO P g > > T - 0 0 -65.9 124.2 179.3 -148.9 21.3 117.4 0 0.0 78 -1.5 0 0.0 79 -0.6 6 10
76 E 111 LEU L G G 4 > TS+ 0 0 -61.5 -35.2 -180.0 63.3 97.0 29.0 0 0.0 79 -1.2 0 0.0 0 0.0 5 11
77 E 112 THR T G G 4 3 TS+ 0 0 -64.5 -13.7 -179.8 47.8 104.1 51.4 0 0.0 0 0.0 0 0.0 0 0.0 4 9
78 E 113 GLN Q G G 4 < TS+ 0 0 -106.2 -6.7 178.7 100.7 88.2 59.6 75 -1.5 0 0.0 0 0.0 0 0.0 6 10
79 E 114 ARG R S g < < TS- 0 0 -76.0 152.4 178.6 -105.4 84.1 117.6 76 -1.2 0 0.0 75 -0.6 0 0.0 7 11
80 E 115 LEU L - 0 0 -77.2 129.0 -179.1 -164.7 44.5 130.9 0 0.0 0 0.0 0 0.0 0 0.0 4 10
81 E 116 ALA A + 0 0 -127.7 133.5 179.0 171.6 17.3 166.7 0 0.0 0 0.0 0 0.0 0 0.0 4 11
82 E 117 VAL V - 0 0 -135.4 139.2 179.3 -131.0 28.6 174.5 0 0.0 84 -0.6 0 0.0 0 0.0 4 11
83 E 118 GLN Q - 0 0 -93.1 121.4 -179.8 -140.0 22.5 144.3 0 0.0 0 0.0 0 0.0 0 0.0 4 9
84 E 119 ILE I + 0 0 -81.3 127.7 -180.0 143.9 41.1 133.4 82 -0.6 0 0.0 0 0.0 0 0.0 5 11
85 E 120 THR T + 0 0 -135.3 -31.4 -177.9 30.8 66.8 49.7 0 0.0 0 0.0 0 0.0 0 0.0 5 11
86 E 121 GLU E S h > TS+ 0 0 -117.8 11.8 -178.0 104.9 82.7 74.9 0 0.0 90 -2.6 0 0.0 0 0.0 6 14
87 E 122 CYS C H H > TS+ 0 0 -63.6 -40.3 178.9 47.7 81.3 28.8 0 0.0 91 -1.6 0 0.0 0 0.0 7 18
88 E 123 VAL V H H > TS+ 0 0 -66.6 -42.4 179.4 49.8 113.2 20.9 0 0.0 92 -3.1 0 0.0 0 0.0 7 14
89 E 124 LYS K H H > TS+ 0 0 -58.7 -49.6 179.9 52.0 108.8 19.6 0 0.0 93 -3.3 0 0.0 0 0.0 7 14
90 E 125 ALA A H H < >TS+ 0 0 -56.7 -34.5 179.8 45.0 113.6 33.1 86 -2.6 95 -1.6 0 0.0 96 -1.4 10 16
91 E 126 ALA A H H < >5TS+ 0 0 -74.9 -50.2 -179.7 45.8 114.6 18.0 87 -1.6 94 -1.5 0 0.0 0 0.0 10 17
92 E 127 ASP D H H < 35TS+ 0 0 -59.2 -39.8 -179.2 54.1 111.3 27.2 88 -3.1 0 0.0 0 0.0 0 0.0 7 15
93 E 128 GLU E T h < 35TS- 0 0 -73.1 -7.0 179.2 -118.1 114.7 58.6 89 -3.3 0 0.0 0 0.0 0 0.0 6 14
94 E 129 GLY G T h > <5TS+ 0 0 83.2 6.2 -179.7 122.0 79.7 58.8 91 -1.5 98 -1.7 0 0.0 0 0.0 8 16
95 E 130 PHE F H H > TS+ 0 0 -64.6 -40.8 178.4 53.8 108.7 25.8 90 -1.4 100 -2.4 0 0.0 0 0.0 8 16
97 E 132 ASN N H H > TS+ 0 0 -58.8 -40.7 179.5 50.5 109.5 26.2 0 0.0 101 -1.4 0 0.0 0 0.0 8 15
98 E 133 LEU L H H X TS+ 0 0 -63.5 -52.0 -178.9 45.7 110.9 18.1 94 -1.7 102 -2.4 0 0.0 0 0.0 8 14
99 E 134 ILE I H H < TS+ 0 0 -60.7 -40.6 -179.7 51.0 112.6 26.4 95 -2.4 0 0.0 0 0.0 0 0.0 7 13
100 E 135 LYS K H H < TS+ 0 0 -67.2 -29.3 -179.1 46.4 113.4 37.4 96 -2.4 0 0.0 0 0.0 0 0.0 6 13
101 E 136 SER S H H < T 0 0 -82.4 -39.8 -179.5 999.9 999.9 29.4 97 -1.4 0 0.0 0 0.0 0 0.0 5 9
102 E 137 LYS K h < T 0 0 -52.9 999.9 999.9 999.9 999.9 22.0 98 -2.4 0 0.0 0 0.0 0 0.0 4 8
1jyoE.pdb
1JYO CHAPERONE MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand EE SS BTTB EE TT HHHHHHHHHHS S HHHHHHHHHHHHHTTSHHHHHHHHHHHHH GGGS SHHHHHHTTHHHHHH Kabs/Sand
chirality -----+----+-----------+++++++++++++-+-+++++++++++++++++-+++++++++++++--+--+++--+--+++++++++-+++++++ chirality
bends SS SSSS SS SSSSSSSSSSS S SSSSSSSSSSSSSSSSSSSSSSSSSSSSS SSSS SSSSSSSSSSSSSSS bends
turns TTTT TTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTT TTTTTTTTTTTTTTT turns
5-turns >5555< 5-turns
3-turns >33< >33X33< >>3<< >33< >>3<< >33< 3-turns
bridge-2 bridge-2
bridge-1 AA A A AA bridge-1
sheets AA AA sheets
4-turns >>>>XXXX<<<< >>>>XXXXXXX<<<< >>>>XXXXXXX<<<< >444< >>>><<<<>>>>X<< 4-turns
summary EEeSS BTTB eEE tTThHHHHHHHHHHh ShHHHHHHHHHHHHHhThHHHHHHHHHHHHHh gGGGg hHHHHHHhhHHHHHH summary
sequence DKAYVAPEKFSSKVLTWLGKMPLFKNTEVVQKHTENIRVQDQKILQTFLHALTEKYGETAVNDALLMSRINMNKPLTQRLAVQITECVKAADEGFINLIK sequence
10 20 30 40 50 60 70 80 90 100
author author
Kabs/Sand H Kabs/Sand
chirality chirality
bends bends
turns TT turns
5-turns 5-turns
3-turns 3-turns
bridge-2 bridge-2
bridge-1 bridge-1
sheets sheets
4-turns << 4-turns
summary Hh summary
sequence SK sequence