Secondary structure calculation program - copyright by David Keith Smith, 1989
1jthB.pdb
1JTH ENDOCYTOSIS/EXOCYTOSIS MOL_ID: 1; MOL_ID: 1;
Sequence length - 67
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 B 191 ALA A h > T 0 0 999.9 -76.7 -179.4 999.9 999.9 999.9 0 0.0 5 -2.0 0 0.0 0 0.0 4 8
2 B 192 LEU L H H > T + 0 0 -66.1 -44.9 -179.7 53.8 999.9 23.0 0 0.0 6 -2.4 0 0.0 0 0.0 5 9
3 B 193 SER S H H > TS+ 0 0 -57.2 -42.3 180.0 46.3 111.7 25.6 0 0.0 7 -2.1 0 0.0 0 0.0 6 10
4 B 194 GLU E H H > TS+ 0 0 -66.4 -45.7 179.6 50.4 111.0 23.3 0 0.0 8 -2.5 0 0.0 0 0.0 7 11
5 B 195 ILE I H H X TS+ 0 0 -60.2 -36.3 -179.5 50.6 111.7 29.3 1 -2.0 9 -1.8 0 0.0 0 0.0 8 12
6 B 196 GLU E H H X TS+ 0 0 -68.3 -43.7 -179.6 48.4 110.2 23.6 2 -2.4 10 -2.8 0 0.0 0 0.0 8 13
7 B 197 THR T H H X TS+ 0 0 -64.1 -44.3 179.5 48.4 111.5 26.2 3 -2.1 11 -2.6 0 0.0 0 0.0 8 14
8 B 198 ARG R H H X TS+ 0 0 -64.0 -40.6 178.5 47.1 114.4 26.2 4 -2.5 12 -2.0 0 0.0 0 0.0 8 15
9 B 199 HIS H H H X TS+ 0 0 -64.0 -49.9 -179.4 49.9 112.4 17.9 5 -1.8 13 -2.2 0 0.0 0 0.0 8 16
10 B 200 SER S H H X TS+ 0 0 -56.8 -43.3 179.5 50.2 110.0 27.8 6 -2.8 14 -2.1 0 0.0 0 0.0 8 16
11 B 201 GLU E H H X TS+ 0 0 -63.1 -44.1 -180.0 50.7 109.7 23.4 7 -2.6 15 -1.7 0 0.0 0 0.0 8 16
12 B 202 ILE I H H X TS+ 0 0 -61.8 -41.7 179.7 47.6 111.4 25.3 8 -2.0 16 -2.4 0 0.0 0 0.0 8 16
13 B 203 ILE I H H X TS+ 0 0 -66.2 -40.5 179.3 52.6 109.8 27.1 9 -2.2 17 -2.1 0 0.0 0 0.0 8 16
14 B 204 LYS K H H X TS+ 0 0 -63.0 -32.4 -179.8 49.8 110.6 34.0 10 -2.1 18 -1.5 0 0.0 0 0.0 8 16
15 B 205 LEU L H H X TS+ 0 0 -73.4 -45.2 179.7 51.7 107.4 22.8 11 -1.7 19 -3.0 0 0.0 0 0.0 8 16
16 B 206 GLU E H H X TS+ 0 0 -58.9 -38.0 -179.4 49.7 110.7 28.0 12 -2.4 20 -1.5 0 0.0 0 0.0 8 16
17 B 207 ASN N H H X TS+ 0 0 -67.0 -39.9 179.6 46.5 112.5 27.6 13 -2.1 21 -1.3 0 0.0 0 0.0 8 16
18 B 208 SER S H H X TS+ 0 0 -69.3 -39.3 179.8 52.2 111.4 27.3 14 -1.5 22 -1.6 0 0.0 0 0.0 8 16
19 B 209 ILE I H H X TS+ 0 0 -70.1 -25.2 178.7 56.5 104.6 37.2 15 -3.0 23 -2.1 0 0.0 0 0.0 8 16
20 B 210 ARG R H H X TS+ 0 0 -72.7 -36.4 179.5 49.2 106.9 27.2 16 -1.5 24 -2.1 0 0.0 0 0.0 8 16
21 B 211 GLU E H H X TS+ 0 0 -68.5 -34.9 -179.2 49.6 111.2 31.4 17 -1.3 25 -1.8 0 0.0 0 0.0 8 16
22 B 212 LEU L H H X TS+ 0 0 -70.9 -41.3 178.7 53.4 108.0 25.4 18 -1.6 26 -2.1 0 0.0 0 0.0 8 16
23 B 213 HIS H H H X TS+ 0 0 -58.3 -46.7 179.9 48.9 109.7 20.2 19 -2.1 27 -2.3 0 0.0 0 0.0 8 16
24 B 214 ASP D H H X TS+ 0 0 -61.8 -39.3 179.1 55.9 106.7 27.6 20 -2.1 28 -2.9 0 0.0 0 0.0 8 16
25 B 215 MET M H H X TS+ 0 0 -60.0 -41.6 -179.8 45.3 110.1 25.9 21 -1.8 29 -1.8 0 0.0 0 0.0 8 16
26 B 216 PHE F H H X TS+ 0 0 -69.5 -39.6 178.9 51.0 112.1 26.2 22 -2.1 30 -2.7 0 0.0 0 0.0 8 16
27 B 217 MET M H H X TS+ 0 0 -61.6 -47.5 179.8 45.1 113.7 19.9 23 -2.3 31 -1.8 0 0.0 0 0.0 8 16
28 B 218 ASP D H H X TS+ 0 0 -65.3 -32.3 -179.3 55.3 110.9 33.1 24 -2.9 32 -2.4 0 0.0 0 0.0 8 16
29 B 219 MET M H H X TS+ 0 0 -66.0 -49.0 -180.0 48.1 106.6 18.1 25 -1.8 33 -2.9 0 0.0 0 0.0 8 16
30 B 220 ALA A H H X TS+ 0 0 -59.7 -36.9 179.6 52.7 111.4 28.7 26 -2.7 34 -2.2 0 0.0 0 0.0 8 16
31 B 221 MET M H H X TS+ 0 0 -63.7 -52.0 179.4 42.8 112.6 15.2 27 -1.8 35 -2.0 0 0.0 0 0.0 8 16
32 B 222 LEU L H H X TS+ 0 0 -59.8 -44.3 -178.9 51.7 114.0 26.0 28 -2.4 36 -2.6 0 0.0 0 0.0 8 16
33 B 223 VAL V H H X TS+ 0 0 -63.3 -40.8 180.0 48.5 109.6 25.4 29 -2.9 37 -1.8 0 0.0 0 0.0 8 16
34 B 224 GLU E H H X TS+ 0 0 -66.3 -39.8 179.6 49.2 112.8 24.2 30 -2.2 38 -1.2 0 0.0 0 0.0 8 16
35 B 225 SER S H H X TS+ 0 0 -64.9 -43.8 180.0 46.7 111.9 24.3 31 -2.0 39 -1.3 0 0.0 0 0.0 8 16
36 B 226 GLN Q H H X TS+ 0 0 -69.2 -26.6 177.9 63.8 104.6 35.0 32 -2.6 40 -2.3 0 0.0 0 0.0 8 16
37 B 227 GLY G H H X TS+ 0 0 -64.3 -33.8 179.4 50.3 100.9 32.0 33 -1.8 41 -2.2 0 0.0 0 0.0 8 16
38 B 228 GLU E H H X TS+ 0 0 -72.7 -34.0 179.2 49.2 110.6 30.9 34 -1.2 42 -1.7 0 0.0 0 0.0 8 16
39 B 229 MET M H H X TS+ 0 0 -72.0 -32.6 179.2 51.9 110.1 31.9 35 -1.3 43 -2.3 0 0.0 0 0.0 8 16
40 B 230 ILE I H H X TS+ 0 0 -68.8 -41.7 178.9 56.4 104.4 23.8 36 -2.3 44 -3.0 0 0.0 0 0.0 8 16
41 B 231 ASP D H H X TS+ 0 0 -52.5 -49.4 -179.1 43.8 111.3 20.4 37 -2.2 45 -1.8 0 0.0 0 0.0 8 16
42 B 232 ARG R H H X TS+ 0 0 -63.6 -47.0 -179.7 50.6 112.4 24.5 38 -1.7 46 -2.8 0 0.0 0 0.0 8 16
43 B 233 ILE I H H X TS+ 0 0 -58.4 -43.9 179.5 53.3 108.5 23.1 39 -2.3 47 -2.4 0 0.0 0 0.0 8 16
44 B 234 GLU E H H X TS+ 0 0 -55.6 -43.2 -179.9 47.7 111.2 23.9 40 -3.0 48 -1.9 0 0.0 0 0.0 8 16
45 B 235 TYR Y H H X TS+ 0 0 -64.6 -46.1 -179.7 48.9 110.8 25.0 41 -1.8 49 -2.0 0 0.0 0 0.0 8 16
46 B 236 ASN N H H X TS+ 0 0 -65.6 -30.5 -179.8 54.4 109.9 34.1 42 -2.8 50 -2.1 0 0.0 0 0.0 8 17
47 B 237 VAL V H H X TS+ 0 0 -70.6 -42.9 179.5 46.4 108.1 23.7 43 -2.4 51 -2.6 0 0.0 0 0.0 8 16
48 B 238 GLU E H H X TS+ 0 0 -64.6 -39.9 179.8 52.4 112.4 25.6 44 -1.9 52 -2.2 0 0.0 0 0.0 8 16
49 B 239 HIS H H H X TS+ 0 0 -61.5 -45.2 -179.7 45.2 112.1 22.8 45 -2.0 53 -1.8 0 0.0 0 0.0 8 16
50 B 240 ALA A H H X TS+ 0 0 -66.6 -40.4 -179.9 58.4 107.6 26.4 46 -2.1 54 -3.3 0 0.0 0 0.0 8 17
51 B 241 VAL V H H X TS+ 0 0 -54.8 -48.5 178.6 45.4 108.3 20.0 47 -2.6 55 -2.7 0 0.0 0 0.0 8 16
52 B 242 ASP D H H X TS+ 0 0 -62.7 -39.8 179.3 48.8 114.6 27.9 48 -2.2 56 -1.7 0 0.0 0 0.0 8 16
53 B 243 TYR Y H H X TS+ 0 0 -63.2 -55.7 179.5 42.7 115.3 12.0 49 -1.8 57 -2.8 0 0.0 0 0.0 8 16
54 B 244 VAL V H H X TS+ 0 0 -57.5 -40.3 -178.9 55.7 112.0 30.6 50 -3.3 58 -2.6 0 0.0 0 0.0 8 16
55 B 245 GLU E H H X TS+ 0 0 -64.4 -35.7 179.5 42.5 111.6 30.3 51 -2.7 59 -1.5 0 0.0 0 0.0 8 17
56 B 246 ARG R H H X TS+ 0 0 -75.9 -41.0 179.6 56.4 111.3 25.3 52 -1.7 60 -3.0 0 0.0 0 0.0 8 16
57 B 247 ALA A H H X TS+ 0 0 -55.9 -45.1 179.2 43.1 110.9 24.8 53 -2.8 61 -1.9 0 0.0 0 0.0 8 16
58 B 248 VAL V H H X TS+ 0 0 -70.3 -35.9 178.7 54.6 111.8 28.4 54 -2.6 62 -2.3 0 0.0 0 0.0 8 16
59 B 249 SER S H H X TS+ 0 0 -61.8 -43.6 179.2 51.8 106.9 22.2 55 -1.5 63 -2.7 0 0.0 0 0.0 8 17
60 B 250 ASP D H H X TS+ 0 0 -56.3 -52.2 -178.7 44.3 112.5 17.8 56 -3.0 64 -2.6 0 0.0 0 0.0 8 15
61 B 251 THR T H H X TS+ 0 0 -63.6 -32.7 -179.7 53.5 111.9 34.5 57 -1.9 65 -2.5 0 0.0 0 0.0 8 14
62 B 252 LYS K H H X TS+ 0 0 -69.2 -42.5 177.9 47.5 109.9 23.7 58 -2.3 66 -2.2 0 0.0 0 0.0 8 13
63 B 253 LYS K H H X TS+ 0 0 -61.2 -49.7 179.6 51.6 111.3 19.0 59 -2.7 67 -1.7 0 0.0 0 0.0 8 12
64 B 254 ALA A H H < > TS+ 0 0 -51.8 -57.3 179.5 48.7 109.4 16.6 60 -2.6 67 -0.9 0 0.0 0 0.0 7 11
65 B 255 VAL V H H < 3 TS+ 0 0 -49.6 -45.4 -179.4 59.1 106.5 24.6 61 -2.5 0 0.0 0 0.0 0 0.0 6 10
66 B 256 LYS K H H < 3 T 0 0 -53.1 -40.8 -179.6 999.9 999.9 31.2 62 -2.2 0 0.0 0 0.0 0 0.0 5 9
67 B 257 TYR Y h < < T 0 0 -104.9 999.9 999.9 999.9 999.9 71.6 63 -1.7 0 0.0 64 -0.9 0 0.0 4 8
1jthB.pdb
1JTH ENDOCYTOSIS/EXOCYTOSIS MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Kabs/Sand
chirality ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ chirality
bends SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS bends
turns TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT turns
5-turns 5-turns
3-turns >33< 3-turns
bridge-2 bridge-2
bridge-1 bridge-1
sheets sheets
4-turns >>>>XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX<<<< 4-turns
summary hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh summary
sequence ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY sequence
10 20 30 40 50 60