Secondary structure calculation program - copyright by David Keith Smith, 1989
1j75A.pdb
1J75 IMMUNE SYSTEM/DNA MOL_ID: 1; MOL_ID: 1;
Sequence length - 57
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 113 ASN N h > T 0 0 999.9 111.5 174.3 999.9 999.9 999.9 0 0.0 5 -1.5 0 0.0 0 0.0 4 18
2 A 114 LEU L H H > T + 0 0 -59.6 -41.5 179.9 62.9 999.9 30.0 0 0.0 6 -2.7 0 0.0 0 0.0 8 29
3 A 115 GLU E H H > TS+ 0 0 -54.3 -47.5 -179.4 44.2 105.3 23.6 0 0.0 7 -2.3 0 0.0 0 0.0 7 38
4 A 116 GLN Q H H > TS+ 0 0 -67.4 -38.2 -179.6 52.6 112.6 27.0 0 0.0 8 -2.3 0 0.0 0 0.0 7 27
5 A 117 LYS K H H X TS+ 0 0 -64.8 -40.2 178.7 48.6 109.7 27.6 1 -1.5 9 -2.3 0 0.0 0 0.0 9 34
6 A 118 ILE I H H X TS+ 0 0 -63.5 -46.3 -178.2 49.1 111.8 18.8 2 -2.7 10 -2.6 0 0.0 0 0.0 10 50
7 A 119 LEU L H H X TS+ 0 0 -62.0 -39.4 179.5 50.0 111.1 27.3 3 -2.3 11 -2.4 0 0.0 0 0.0 9 43
8 A 120 GLN Q H H X TS+ 0 0 -63.8 -49.6 178.2 49.7 110.3 22.9 4 -2.3 12 -2.8 0 0.0 0 0.0 8 33
9 A 121 VAL V H H X TS+ 0 0 -53.9 -51.0 -179.4 44.4 114.6 19.4 5 -2.3 13 -2.3 0 0.0 0 0.0 10 39
10 A 122 LEU L H H X TS+ 0 0 -63.1 -40.6 -179.7 47.8 115.1 29.6 6 -2.6 14 -2.7 0 0.0 0 0.0 14 41
11 A 123 SER S H H < TS+ 0 0 -68.9 -47.4 176.2 48.6 112.2 20.2 7 -2.4 0 0.0 0 0.0 0 0.0 10 30
12 A 124 ASP D H H < TS+ 0 0 -58.1 -46.9 178.4 47.4 113.7 24.4 8 -2.8 0 0.0 0 0.0 0 0.0 6 23
13 A 125 ASP D H H < TS- 0 0 -60.3 -52.8 179.0 -163.2 87.0 15.2 9 -2.3 0 0.0 0 0.0 0 0.0 8 27
14 A 126 GLY G h < T + 0 0 90.2 -20.1 -179.8 62.2 59.1 78.8 10 -2.7 0 0.0 0 0.0 0 0.0 8 24
15 A 127 GLY G S S S- 0 0 -125.9 -168.6 -177.8 -46.3 102.0 122.5 0 0.0 0 0.0 0 0.0 0 0.0 8 26
16 A 128 PRO P - 0 0 -67.5 127.1 -177.3 -162.7 55.4 117.7 0 0.0 0 0.0 0 0.0 0 0.0 10 31
17 A 129 VAL V E E AA - 54 0 -119.1 131.6 179.4 -127.9 13.6 163.7 54 -3.1 54 -3.2 0 0.0 0 0.0 11 37
18 A 130 LYS K E E >AA > T - 53 0 -75.6 148.2 -179.8 -121.2 20.4 119.2 0 0.0 22 -1.7 0 0.0 21 -0.6 9 39
19 A 131 ILE I H H > 3 TS+ 0 0 -54.6 -39.9 -179.5 57.3 115.1 27.3 52 -2.0 23 -1.9 0 0.0 0 0.0 11 42
20 A 132 GLY G H H > 3 TS+ 0 0 -60.4 -39.2 178.6 50.7 104.3 29.9 0 0.0 24 -1.5 0 0.0 0 0.0 7 29
21 A 133 GLN Q H H > < TS+ 0 0 -69.3 -33.7 175.9 54.5 107.1 32.2 18 -0.6 25 -1.7 0 0.0 0 0.0 8 35
22 A 134 LEU L H H X TS+ 0 0 -66.7 -37.3 174.0 58.9 101.8 31.4 18 -1.7 26 -3.3 0 0.0 0 0.0 13 44
23 A 135 VAL V H H X TS+ 0 0 -54.0 -49.1 -180.0 44.4 108.6 19.0 19 -1.9 27 -2.5 0 0.0 0 0.0 12 31
24 A 136 LYS K H H < TS+ 0 0 -61.6 -41.2 -175.0 42.6 119.2 26.1 20 -1.5 0 0.0 0 0.0 0 0.0 8 23
25 A 137 LYS K H H < TS+ 0 0 -75.9 -36.7 -178.2 32.6 125.2 32.1 21 -1.7 0 0.0 0 0.0 0 0.0 7 29
26 A 138 CYS C H H < TS- 0 0 -99.1 -16.1 174.0 -139.2 93.0 54.5 22 -3.3 0 0.0 0 0.0 0 0.0 9 34
27 A 139 GLN Q h < T + 0 0 60.1 42.5 175.9 106.8 64.1 29.5 23 -2.5 0 0.0 0 0.0 0 0.0 7 25
28 A 140 VAL V S S S- 0 0 -143.1 157.4 -179.6 -84.6 75.6 161.3 0 0.0 0 0.0 0 0.0 0 0.0 8 26
29 A 141 PRO P h > T - 0 0 -64.9 155.6 -176.9 -112.8 35.3 99.3 0 0.0 33 -1.9 0 0.0 0 0.0 7 24
30 A 142 LYS K H H > TS+ 0 0 -57.5 -47.1 179.3 55.3 114.8 28.1 0 0.0 34 -3.0 0 0.0 0 0.0 9 28
31 A 143 LYS K H H > TS+ 0 0 -53.6 -48.3 179.9 49.5 108.3 21.3 0 0.0 35 -2.3 0 0.0 0 0.0 6 25
32 A 144 THR T H H > TS+ 0 0 -59.6 -40.1 177.6 48.2 112.0 27.1 0 0.0 36 -1.2 0 0.0 0 0.0 8 28
33 A 145 LEU L H H X TS+ 0 0 -65.0 -45.9 -176.5 51.7 109.8 21.8 29 -1.9 37 -3.3 0 0.0 0 0.0 13 41
34 A 146 ASN N H H X TS+ 0 0 -64.4 -35.3 177.0 59.5 101.6 28.2 30 -3.0 38 -2.8 0 0.0 0 0.0 8 40
35 A 147 GLN Q H H X TS+ 0 0 -56.3 -44.9 179.6 36.2 115.8 20.7 31 -2.3 39 -1.0 0 0.0 0 0.0 8 31
36 A 148 VAL V H H X TS+ 0 0 -72.4 -47.9 179.2 53.7 116.1 19.5 32 -1.2 40 -3.3 0 0.0 0 0.0 10 40
37 A 149 LEU L H H X TS+ 0 0 -54.3 -47.1 -178.4 46.8 109.6 24.5 33 -3.3 41 -2.5 0 0.0 0 0.0 9 49
38 A 150 TYR Y H H X TS+ 0 0 -69.0 -30.5 176.4 50.4 112.8 32.3 34 -2.8 42 -1.8 0 0.0 0 0.0 8 34
39 A 151 ARG R H H X TS+ 0 0 -67.5 -50.6 178.4 48.4 110.6 11.9 35 -1.0 43 -1.3 0 0.0 0 0.0 8 27
40 A 152 LEU L H H < >TS+ 0 0 -54.5 -38.5 -178.6 53.7 110.6 27.9 36 -3.3 45 -2.7 0 0.0 0 0.0 10 34
41 A 153 LYS K H H < >5TS+ 0 0 -65.5 -39.8 -179.1 51.8 104.6 27.5 37 -2.5 44 -1.9 0 0.0 0 0.0 11 30
42 A 154 LYS K H H < 35TS+ 0 0 -69.7 -20.2 177.1 55.5 107.6 45.0 38 -1.8 0 0.0 0 0.0 0 0.0 7 20
43 A 155 GLU E T h < 35TS- 0 0 -92.3 10.2 -178.7 -117.7 116.4 77.2 39 -1.3 0 0.0 0 0.0 0 0.0 7 20
44 A 156 ASP D T T <5TS+ 0 0 56.9 28.6 -177.8 118.1 84.6 39.9 41 -1.9 0 0.0 0 0.0 0 0.0 8 19
45 A 157 ARG R S e TS- 53 0 -142.8 162.8 -179.3 -74.3 105.0 163.3 53 -0.6 53 -1.9 0 0.0 0 0.0 6 21
51 A 163 PRO P T T 3 TS- 0 0 -64.8 133.6 -179.1 -1.4 116.6 108.8 0 0.0 0 0.0 0 0.0 0 0.0 5 21
52 A 164 ALA A T e 3 TS+ 0 0 56.6 26.1 177.0 113.9 111.5 41.2 0 0.0 19 -2.0 0 0.0 0 0.0 7 34
53 A 165 THR T E E AAB< T - 18 50 -127.7 137.4 -169.6 -168.5 47.4 171.9 50 -1.9 50 -0.6 0 0.0 0 0.0 11 36
54 A 166 TRP W E E AA* + 17 0 -134.7 147.1 177.0 167.6 12.5 159.0 17 -3.2 17 -3.1 0 0.0 0 0.0 14 47
55 A 167 SER S E E A B - 0 47 -146.6 173.4 -177.6 -76.1 44.0 163.3 47 -2.1 47 -2.0 0 0.0 0 0.0 14 43
56 A 168 ILE I E E A B 0 46 -78.2 138.9 -179.2 999.9 999.9 117.3 0 0.0 0 0.0 0 0.0 0 0.0 11 38
57 A 169 GLY G e 0 0 94.3 999.9 999.9 999.9 999.9 52.7 45 -1.0 0 0.0 0 0.0 0 0.0 6 31
1j75A.pdb
1J75 IMMUNE SYSTEM/DNA MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand HHHHHHHHHHHH S EEHHHHHHHH S HHHHHHHHHHHHHTTSEEEEETTEEEE Kabs/Sand
chirality +++++++++++-+----+++++++-+--+++++++++++++-++--++--+-+- chirality
bends SSSSSSSSSSS S SSSSSSSS S SSSSSSSSSSSSSSSSS SSSS bends
turns TTTTTTTTTTTTTT TTTTTTTTTT TTTTTTTTTTTTTTTTT TTTT turns
5-turns >5555< 5-turns
3-turns >33< >33< >33< 3-turns
bridge-2 B*BB bridge-2
bridge-1 AA BB**B AA bridge-1
sheets AA AAAAA AAAA sheets
4-turns >>>>XXXXXX<<<< >>>>XX<<<< >>>>XXXXXXX<<<< 4-turns
summary hHHHHHHHHHHHHhS EEHHHHHHHHhShHHHHHHHHHHHHHhTeEEEEETeEEEEe summary
sequence NLEQKILQVLSDDGGPVKIGQLVKKCQVPKKTLNQVLYRLKKEDRVSSPEPATWSIG sequence
10 20 30 40 50