Secondary structure calculation program - copyright by David Keith Smith, 1989
1i5jA.pdb
1I5J LIPID TRANSPORT MOL_ID: 1; MOL_ID: 1;
Sequence length - 67
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 13 THR T 0 0 999.9 -173.5 179.9 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 4 8
2 A 14 PHE F h > T + 0 0 -164.3 -61.0 -180.0 49.1 999.9 82.2 0 0.0 6 -1.6 0 0.0 0 0.0 5 9
3 A 15 LEU L H H > > TS+ 0 0 -60.1 -56.3 -179.9 45.1 115.1 14.8 0 0.0 7 -1.2 0 0.0 6 -0.5 6 10
4 A 16 THR T H H > 3 TS+ 0 0 -58.9 -28.7 -180.0 64.1 106.8 37.3 0 0.0 8 -2.2 0 0.0 0 0.0 7 11
5 A 17 GLN Q H H > 3 TS+ 0 0 -61.6 -47.1 -180.0 52.6 97.8 21.6 0 0.0 9 -1.5 0 0.0 0 0.0 8 13
6 A 18 VAL V H H X < TS+ 0 0 -57.6 -36.2 179.9 51.7 109.6 31.4 2 -1.6 10 -2.6 3 -0.5 0 0.0 8 14
7 A 19 LYS K H H X TS+ 0 0 -64.5 -61.0 179.6 44.8 109.7 9.3 3 -1.2 11 -3.1 0 0.0 0 0.0 8 14
8 A 20 GLU E H H X TS+ 0 0 -56.1 -21.1 179.9 56.5 114.4 43.2 4 -2.2 12 -1.4 0 0.0 0 0.0 8 17
9 A 21 SER S H H X TS+ 0 0 -75.6 -57.3 179.9 36.4 111.3 15.0 5 -1.5 13 -1.6 0 0.0 0 0.0 8 16
10 A 22 LEU L H H X TS+ 0 0 -64.4 -35.2 179.8 47.5 122.6 31.1 6 -2.6 14 -0.7 0 0.0 0 0.0 8 16
11 A 23 SER S H H X > TS+ 0 0 -73.9 -36.6 179.7 58.6 105.2 30.6 7 -3.1 15 -2.0 0 0.0 14 -0.7 8 16
12 A 24 SER S H H X 3 TS+ 0 0 -60.3 -37.0 179.6 64.0 95.9 29.6 8 -1.4 16 -1.3 0 0.0 0 0.0 8 17
13 A 25 TYR Y H H < 3 TS+ 0 0 -54.0 -38.8 179.6 28.2 117.2 29.2 9 -1.6 0 0.0 0 0.0 0 0.0 8 16
14 A 26 TRP W H H X < TS+ 0 0 -97.2 -15.9 -179.7 84.9 102.3 53.7 11 -0.7 18 -2.0 10 -0.7 0 0.0 8 16
15 A 27 GLU E H H X TS+ 0 0 -53.3 -42.6 179.9 52.5 89.1 26.9 11 -2.0 19 -1.8 0 0.0 0 0.0 8 19
16 A 28 SER S H H X TS+ 0 0 -61.4 -39.9 179.1 53.1 106.3 26.5 12 -1.3 20 -3.0 0 0.0 0 0.0 8 18
17 A 29 ALA A H H > TS+ 0 0 -62.4 -36.9 178.7 46.0 111.6 28.0 0 0.0 21 -1.1 0 0.0 0 0.0 8 18
18 A 30 LYS K H H X TS+ 0 0 -75.4 -26.1 179.7 52.9 112.8 40.0 14 -2.0 22 -0.9 0 0.0 0 0.0 8 19
19 A 31 THR T H H X > TS+ 0 0 -72.5 -59.6 179.6 40.5 111.6 11.8 15 -1.8 23 -3.0 0 0.0 22 -0.7 8 19
20 A 32 ALA A H H X 3 TS+ 0 0 -59.8 -27.1 179.3 52.0 118.0 37.4 16 -3.0 24 -1.4 0 0.0 0 0.0 8 17
21 A 33 ALA A H H < 3 TS+ 0 0 -80.1 -25.6 179.6 45.9 111.8 41.3 17 -1.1 0 0.0 0 0.0 0 0.0 8 19
22 A 34 GLN Q H H X <>TS+ 0 0 -81.2 -48.8 -180.0 52.2 109.7 23.0 18 -0.9 26 -2.2 19 -0.7 27 -1.8 10 20
23 A 35 ASN N H H < >TS+ 0 0 -51.7 -56.7 179.5 43.6 113.1 18.8 19 -3.0 29 -1.8 0 0.0 28 -1.3 10 21
24 A 36 LEU L T h < 5TS+ 0 0 -60.5 -28.3 179.8 55.5 115.3 36.9 20 -1.4 0 0.0 0 0.0 0 0.0 9 17
25 A 37 TYR Y T T 4 5TS- 0 0 -66.6 -78.0 -179.9 -60.1 136.5 5.2 0 0.0 0 0.0 0 0.0 0 0.0 8 18
26 A 38 GLU E T T < 5TS+ 0 0 -163.7 26.9 179.7 101.6 107.0 83.7 22 -2.2 0 0.0 0 0.0 0 0.0 9 18
27 A 39 LYS K T T T - 0 0 66.2 98.7 177.9 -60.0 68.3 19.6 0 0.0 36 -1.4 0 0.0 37 -0.9 9 24
35 A 47 GLU E T T 3 TS+ 0 0 37.6 -74.4 -179.7 66.3 135.6 92.2 0 0.0 0 0.0 0 0.0 0 0.0 6 24
36 A 48 LYS K T T 3 TS+ 0 0 -39.5 -33.9 178.8 21.0 123.5 36.1 34 -1.4 0 0.0 0 0.0 0 0.0 7 18
37 A 49 LEU L S t < TS+ 0 0 -107.4 -25.2 -179.8 59.3 123.0 50.5 34 -0.9 0 0.0 0 0.0 0 0.0 8 20
38 A 50 ARG R S S S+ 0 0 -96.8 35.7 179.8 56.9 101.9 96.3 0 0.0 0 0.0 0 0.0 0 0.0 9 27
39 A 51 ASP D S S S+ 0 0 -130.1 -39.0 179.8 65.2 88.2 54.2 0 0.0 0 0.0 0 0.0 0 0.0 9 23
40 A 52 LEU L S t > TS+ 0 0 -56.2 -38.1 -179.8 32.6 116.9 28.8 0 0.0 44 -0.6 0 0.0 0 0.0 8 18
41 A 53 TYR Y T T 4 > TS+ 0 0 -83.0 -55.1 -178.4 47.0 120.5 20.9 0 0.0 47 -0.8 0 0.0 44 -0.6 11 20
42 A 54 SER S T T 4 3 TS+ 0 0 -76.6 19.6 178.2 46.6 117.3 78.7 0 0.0 0 0.0 0 0.0 0 0.0 11 22
43 A 55 LYS K T T 4 3 TS+ 0 0 -131.8 -18.9 178.0 90.8 79.2 59.3 0 0.0 0 0.0 0 0.0 0 0.0 10 19
44 A 56 SER S S t < < TS- 0 0 -45.9 -34.2 179.3 -36.0 133.4 32.3 41 -0.6 0 0.0 40 -0.6 0 0.0 8 16
45 A 57 THR T S S S- 0 0 178.5 32.6 -178.3 -61.9 106.7 83.2 0 0.0 0 0.0 0 0.0 0 0.0 6 15
46 A 58 ALA A S t >TS+ 0 0 75.5 42.9 -179.0 164.3 74.7 25.0 0 0.0 51 -0.6 0 0.0 0 0.0 10 19
47 A 59 ALA A T T 5TS+ 0 0 -61.3 -33.1 -179.9 1.0 85.6 34.4 41 -0.8 0 0.0 0 0.0 0 0.0 10 19
48 A 60 MET M T T 5TS+ 0 0 -135.7 0.0 179.9 74.4 123.3 70.9 0 0.0 0 0.0 0 0.0 0 0.0 9 25
49 A 61 SER S T T 5TS+ 0 0 -80.0 -56.6 179.7 12.7 117.7 17.0 0 0.0 0 0.0 0 0.0 0 0.0 8 23
50 A 62 THR T T h > >5TS+ 0 0 -95.0 -14.6 179.8 71.1 120.0 53.8 0 0.0 53 -0.9 0 0.0 54 -0.6 8 20
51 A 63 TYR Y H H > > 3 TS+ 0 0 -53.5 -24.9 179.0 41.8 103.2 39.0 0 0.0 56 -0.5 0 0.0 0 0.0 8 21
53 A 65 GLY G H H > < TS+ 0 0 -95.2 -20.4 179.6 47.9 115.7 48.5 50 -0.9 57 -0.6 0 0.0 0 0.0 7 17
54 A 66 ILE I H H X < TS+ 0 0 -94.3 -12.4 179.9 73.9 97.2 55.1 51 -0.7 58 -1.1 50 -0.6 0 0.0 8 21
55 A 67 PHE F H H < TS+ 0 0 -64.1 -54.6 179.9 33.4 105.1 15.5 51 -2.6 0 0.0 0 0.0 0 0.0 8 20
56 A 68 THR T H H X > TS+ 0 0 -71.3 -32.7 -179.8 67.4 109.8 34.4 52 -0.5 59 -2.5 0 0.0 60 -1.9 9 19
57 A 69 ASP D H H X 3 TS+ 0 0 -57.5 -30.7 179.7 47.0 102.8 35.2 53 -0.6 61 -0.7 0 0.0 0 0.0 9 18
58 A 70 GLN Q H H < 3 TS+ 0 0 -94.9 12.1 179.8 55.8 111.0 76.2 54 -1.1 0 0.0 0 0.0 0 0.0 9 17
59 A 71 VAL V H H > < TS+ 0 0 -106.2 -57.9 179.5 31.2 112.8 35.7 56 -2.5 63 -2.1 0 0.0 0 0.0 10 16
60 A 72 LEU L H H X TS+ 0 0 -69.8 -37.1 179.5 51.2 122.8 28.4 56 -1.9 64 -2.5 0 0.0 66 -1.6 11 15
61 A 73 SER S H H < TS+ 0 0 -75.2 -9.1 180.0 35.5 121.0 55.6 57 -0.7 0 0.0 0 0.0 0 0.0 10 14
62 A 74 VAL V H H 4 TS+ 0 0 -116.8 -18.2 179.8 40.8 123.9 57.1 0 0.0 0 0.0 0 0.0 0 0.0 9 13
63 A 75 LEU L H H < TS+ 0 0 -98.3 -38.0 179.4 12.0 139.3 37.4 59 -2.1 0 0.0 0 0.0 0 0.0 7 13
64 A 76 LYS K S h < TS- 0 0 -115.5 -7.3 -178.9 -124.0 97.8 65.7 60 -2.5 0 0.0 0 0.0 0 0.0 8 11
65 A 77 GLY G S S S+ 0 0 64.2 35.9 -178.6 83.6 94.0 28.7 0 0.0 0 0.0 0 0.0 0 0.0 7 11
66 A 78 GLU E 0 0 -137.7 -29.8 -179.1 999.9 999.9 57.8 60 -1.6 0 0.0 0 0.0 0 0.0 7 13
67 A 79 GLU E 0 0 74.1 999.9 999.9 999.9 999.9 39.7 0 0.0 0 0.0 0 0.0 0 0.0 10 14
1i5jA.pdb
1I5J LIPID TRANSPORT MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand HHHHHHHHHHHHHHHHHHHHHTTTTSSS S TTSSSSTTTSSSTTTTHHHHHHHHHHHHHSS Kabs/Sand
chirality +++++++++++++++++++++++-+-+-+-++-+++++++++--++++++++++++++++++-+ chirality
bends SSSSSSSSSSSSSSSSSSSSSSSSSSSS S SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS bends
turns TTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT TTTTT TTTTTTTTTTTTTTTTTTT turns
5-turns >>555<< >5555< 5-turns
3-turns >33< >33< >33< >33< >33< >>3<< >33< 3-turns
bridge-2 bridge-2
bridge-1 bridge-1
sheets sheets
4-turns >>>>XXXXXXXXXX444< >>>>XX<4<< 4-turns
summary hHHHHHHHHHHHHHHHHHHHHHhTTTtSS S tTTtSStTTTtStTTThHHHHHHHHHHHHHhS summary
sequence TFLTQVKESLSSYWESAKTAAQNLYEKTYLPAVDEKLRDLYSKSTAAMSTYTGIFTDQVLSVLKGEE sequence
10 20 30 40 50 60