Secondary structure calculation program - copyright by David Keith Smith, 1989
1hyiA.pdb
1HYI ENDOCYTOSIS/EXOCYTOSIS MOL_ID: 1; MOL_ID: 1;
Sequence length - 65
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 1 ARG R 0 0 999.9 -75.7 -180.0 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 5 13
2 A 2 LYS K + 0 0 -64.1 -27.8 179.9 61.7 999.9 34.1 0 0.0 0 0.0 0 0.0 0 0.0 3 16
3 A 3 TRP W S S S- 0 0 -100.4 147.8 -179.8 -112.3 96.4 138.4 0 0.0 5 -2.0 0 0.0 0 0.0 5 22
4 A 4 ALA A + 0 0 -76.8 81.9 -180.0 161.7 48.4 119.8 0 0.0 6 -0.8 0 0.0 0 0.0 11 28
5 A 5 GLU E S S S- 0 0 -99.0 58.4 179.9 -77.4 76.3 112.7 3 -2.0 0 0.0 0 0.0 0 0.0 5 26
6 A 6 ASP D S S S+ 0 0 58.5 18.7 179.7 149.2 84.8 41.4 4 -0.8 0 0.0 0 0.0 0 0.0 6 26
7 A 7 ASN N S S S- 0 0 -53.2 -29.9 179.7 -37.6 90.2 32.1 0 0.0 0 0.0 0 0.0 0 0.0 6 18
8 A 8 GLU E S S S+ 0 0 174.7 33.0 -179.5 109.4 110.9 77.8 0 0.0 0 0.0 0 0.0 0 0.0 4 23
9 A 9 VAL V + 0 0 -86.6 -76.2 -179.7 156.7 20.5 21.5 0 0.0 0 0.0 0 0.0 0 0.0 8 30
10 A 10 GLN Q + 0 0 53.7 32.3 -179.7 78.5 62.2 30.6 0 0.0 0 0.0 0 0.0 0 0.0 8 29
11 A 11 ASN N S S S- 0 0 -170.6 112.1 179.5 -122.1 82.2 132.8 0 0.0 0 0.0 0 0.0 0 0.0 12 33
12 A 12 CYS C - 0 0 -47.9 166.8 179.4 -130.6 22.3 88.5 17 -1.4 0 0.0 0 0.0 0 0.0 16 39
13 A 13 MET M S S S+ 0 0 -90.1 -50.3 179.8 33.6 95.8 25.4 34 -2.9 0 0.0 0 0.0 0 0.0 10 37
14 A 14 ALA A S S S+ 0 0 -69.7 -91.6 179.9 22.8 133.7 21.2 0 0.0 0 0.0 0 0.0 0 0.0 6 33
15 A 15 CYS C S S S- 0 0 -46.6 -27.1 179.1 -152.2 94.3 32.9 0 0.0 0 0.0 0 0.0 0 0.0 8 29
16 A 16 GLY G + 0 0 55.7 43.4 179.9 167.3 30.7 22.5 0 0.0 0 0.0 0 0.0 0 0.0 9 26
17 A 17 LYS K - 0 0 -90.6 146.2 179.8 -107.4 46.3 131.1 0 0.0 12 -1.4 0 0.0 19 -1.2 8 27
18 A 18 GLY G - 0 0 -72.9 99.4 -179.9 -121.4 42.1 123.3 0 0.0 0 0.0 0 0.0 0 0.0 7 25
19 A 19 PHE F + 0 0 -39.7 132.9 -179.8 166.4 47.1 93.3 17 -1.2 0 0.0 0 0.0 0 0.0 12 30
20 A 20 SER S - 0 0 -138.1 -166.4 -179.8 -73.8 54.2 132.6 23 -0.9 0 0.0 0 0.0 0 0.0 6 22
21 A 21 VAL V S S S+ 0 0 -69.2 -19.0 -179.5 46.4 129.9 43.0 0 0.0 0 0.0 0 0.0 0 0.0 5 14
22 A 22 THR T S S S+ 0 0 -89.2 -49.7 -179.4 45.0 112.8 24.6 0 0.0 0 0.0 0 0.0 0 0.0 5 15
23 A 23 VAL V S S S- 0 0 -98.8 135.8 179.6 -152.3 74.6 143.0 0 0.0 20 -0.9 0 0.0 0 0.0 8 26
24 A 24 ARG R e - 0 0 -92.4 -174.0 179.6 -114.3 16.9 104.8 0 0.0 37 -0.9 0 0.0 0 0.0 9 31
25 A 25 ARG R E E AA + 36 0 -126.5 139.4 180.0 173.0 30.3 166.0 0 0.0 0 0.0 0 0.0 0 0.0 12 40
26 A 26 HIS H E E AA - 35 0 -145.7 124.0 -179.0 -153.1 15.2 163.3 35 -3.0 35 -3.7 0 0.0 0 0.0 11 47
27 A 27 HIS H E E AA - 34 0 -101.0 148.6 -180.0 -109.2 26.6 137.9 0 0.0 0 0.0 0 0.0 0 0.0 14 48
28 A 28 CYS C e > T - 0 0 -73.5 123.2 -179.7 -153.3 18.2 124.6 33 -2.9 32 -1.1 0 0.0 0 0.0 13 46
29 A 29 ARG R T T 4 TS+ 0 0 -72.0 -11.8 180.0 52.0 91.2 48.7 54 -2.8 0 0.0 0 0.0 0 0.0 9 43
30 A 30 GLN Q T T 4 TS+ 0 0 -87.5 -72.9 179.7 16.9 124.8 21.6 0 0.0 0 0.0 0 0.0 0 0.0 6 37
31 A 31 CYS C T T 4 TS- 0 0 -68.7 -34.8 -179.8 -124.4 102.8 28.3 0 0.0 0 0.0 0 0.0 0 0.0 7 34
32 A 32 GLY G t < T + 0 0 92.3 49.0 -179.7 140.8 58.3 27.1 28 -1.1 0 0.0 0 0.0 0 0.0 9 35
33 A 33 ASN N e - 0 0 -123.0 156.4 179.7 -115.8 53.7 152.3 0 0.0 28 -2.9 0 0.0 35 -0.6 10 43
34 A 34 ILE I E E AA + 27 0 -92.5 120.4 179.8 177.5 37.6 141.6 0 0.0 13 -2.9 0 0.0 0 0.0 13 45
35 A 35 PHE F E E AA - 26 0 -122.4 149.0 -179.5 -118.6 26.3 156.5 26 -3.7 26 -3.0 33 -0.6 0 0.0 18 45
36 A 36 CYS C E E >AA > T - 25 0 -79.2 168.4 -179.1 -86.2 45.9 107.7 0 0.0 40 -3.2 0 0.0 39 -0.6 18 40
37 A 37 ALA A T e 4 3 TS+ 0 0 -46.5 -23.0 -179.7 48.5 133.1 40.8 24 -0.9 0 0.0 0 0.0 0 0.0 10 33
38 A 38 GLU E T T 4 > TS+ 0 0 -88.2 -37.9 179.8 40.7 115.0 30.1 0 0.0 41 -0.7 0 0.0 0 0.0 6 33
39 A 39 CYS C T T 4 < TS+ 0 0 -76.9 -38.4 180.0 44.7 119.8 26.7 36 -0.6 57 -1.1 0 0.0 0 0.0 11 38
40 A 40 SER S T T < 3 TS+ 0 0 -90.9 23.3 -179.7 116.5 78.1 82.6 36 -3.2 42 -0.6 0 0.0 0 0.0 15 41
41 A 41 ALA A t < T + 0 0 -81.8 37.5 180.0 75.2 62.5 91.4 38 -0.7 0 0.0 0 0.0 0 0.0 9 32
42 A 42 LYS K E E BB + 55 0 -150.6 130.7 179.8 178.2 53.8 164.3 40 -0.6 55 -1.6 55 -0.6 0 0.0 10 35
43 A 43 ASN N E E BB - 54 0 -131.1 150.7 -179.5 -164.4 7.4 162.8 0 0.0 0 0.0 0 0.0 0 0.0 12 37
44 A 44 ALA A E E BB - 53 0 -136.6 150.0 179.5 -116.9 23.4 168.4 53 -1.7 53 -2.0 0 0.0 0 0.0 13 31
45 A 45 LEU L E E BB - 52 0 -85.8 126.6 -179.9 -158.8 31.3 134.8 0 0.0 0 0.0 0 0.0 0 0.0 9 25
46 A 46 THR T E E >BB >T - 51 0 -108.8 141.7 179.3 -141.5 22.1 149.9 51 -1.8 50 -1.4 0 0.0 51 -1.1 11 25
47 A 47 PRO P T T 4 5TS+ 0 0 -73.2 -6.2 179.9 80.0 94.9 56.5 0 0.0 0 0.0 0 0.0 0 0.0 6 17
48 A 48 SER S T T 4 5TS- 0 0 -70.1 -34.6 -179.9 -0.8 121.2 29.5 0 0.0 0 0.0 0 0.0 0 0.0 5 15
49 A 49 SER S T T 4 5TS- 0 0 -137.1 7.8 180.0 -116.9 95.1 73.9 0 0.0 0 0.0 0 0.0 0 0.0 5 15
50 A 50 LYS K T T < 5TS+ 0 0 55.7 44.2 -180.0 107.6 80.2 21.7 46 -1.4 0 0.0 0 0.0 0 0.0 7 14
51 A 51 LYS K E E BB T - 0 0 -70.4 174.0 -178.2 -95.0 50.2 97.1 0 0.0 60 -2.1 0 0.0 0 0.0 14 40
57 A 57 ASP D H H > TS+ 0 0 -58.0 -46.2 -178.5 48.2 120.7 22.7 39 -1.1 61 -1.4 0 0.0 0 0.0 11 37
58 A 58 ALA A H H > > TS+ 0 0 -61.3 -65.9 -179.2 39.5 115.8 4.5 0 0.0 62 -2.3 0 0.0 61 -1.0 6 32
59 A 59 CYS C H H > 3>TS+ 0 0 -53.4 -37.2 179.9 67.3 107.3 27.2 0 0.0 63 -2.9 0 0.0 64 -0.6 11 33
60 A 60 PHE F H H X 35TS+ 0 0 -50.8 -43.9 180.0 31.7 112.4 22.3 56 -2.1 64 -1.4 0 0.0 0 0.0 12 33
61 A 61 ASN N H H < <5TS+ 0 0 -85.7 -23.9 -180.0 58.6 116.8 40.8 57 -1.4 0 0.0 58 -1.0 0 0.0 9 25
62 A 62 ASP D H H < 5TS+ 0 0 -75.6 -25.3 -179.8 28.5 119.7 38.1 58 -2.3 0 0.0 0 0.0 0 0.0 7 24
63 A 63 LEU L H H < 5TS+ 0 0 -106.5 -24.0 179.6 78.8 101.4 46.9 59 -2.9 0 0.0 0 0.0 0 0.0 8 28
64 A 64 GLN Q h < 5555< >5555< 5-turns
3-turns >3><3< >33< 3-turns
bridge-2 bridge-2
bridge-1 AAA AAA BBBBB BBBBB bridge-1
sheets AAA AAA BBBBB BBBBB sheets
4-turns >444< >444< >444< >>>>X<<<< 4-turns
summary S SSSS S SSS SSSeEEEeTTTteEEEeTTTtEEEEETTTTEEEEEhHHHHHHHh summary
sequence RKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQG sequence
10 20 30 40 50 60