Secondary structure calculation program - copyright by David Keith Smith, 1989
1hstA.pdb
1HST CHROMOSOMAL PROTEIN HISTONE H5 (GLOBULAR DOMAIN) CHICKEN (GALLUS GALLUS) ERYTHROCYTES RECOMBINANT F
Sequence length - 74
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 24 SER S 0 0 999.9 174.3 174.9 999.9 999.9 999.9 0 0.0 36 -0.6 0 0.0 0 0.0 3 15
2 A 25 HIS H - 0 0 -165.6 165.1 172.9 -86.5 999.9 149.8 0 0.0 0 0.0 0 0.0 0 0.0 7 23
3 A 26 PRO P - 0 0 -71.3 -177.9 178.5 -62.5 67.3 95.9 0 0.0 0 0.0 0 0.0 0 0.0 7 23
4 A 27 THR T h > T - 0 0 -60.6 155.2 176.0 -108.2 49.2 106.0 0 0.0 8 -2.8 0 0.0 0 0.0 6 32
5 A 28 TYR Y H H > TS+ 0 0 -51.7 -46.0 174.9 52.8 122.0 23.8 0 0.0 9 -2.8 0 0.0 0 0.0 9 41
6 A 29 SER S H H > TS+ 0 0 -61.1 -33.9 -178.2 48.3 108.6 36.2 0 0.0 10 -2.2 0 0.0 0 0.0 10 44
7 A 30 GLU E H H > TS+ 0 0 -79.1 -34.6 176.2 49.0 112.9 27.1 0 0.0 11 -2.0 0 0.0 0 0.0 8 38
8 A 31 MET M H H X TS+ 0 0 -67.9 -37.5 174.6 51.4 110.5 24.4 4 -2.8 12 -2.6 0 0.0 0 0.0 11 47
9 A 32 ILE I H H X TS+ 0 0 -68.1 -39.7 171.4 48.8 109.8 26.6 5 -2.8 13 -1.6 0 0.0 0 0.0 12 53
10 A 33 ALA A H H X TS+ 0 0 -65.6 -36.6 177.8 48.4 112.1 20.0 6 -2.2 14 -2.6 0 0.0 0 0.0 9 49
11 A 34 ALA A H H X TS+ 0 0 -63.6 -43.0 174.4 52.4 111.2 17.8 7 -2.0 15 -1.4 0 0.0 0 0.0 8 40
12 A 35 ALA A H H < TS+ 0 0 -57.5 -33.8 -177.2 41.9 113.6 35.7 8 -2.6 0 0.0 0 0.0 0 0.0 11 44
13 A 36 ILE I H H < > TS+ 0 0 -89.4 -38.3 177.2 59.0 107.6 28.6 9 -1.6 16 -1.3 0 0.0 0 0.0 13 46
14 A 37 ARG R H H < 3 TS+ 0 0 -57.9 -33.8 174.0 53.9 104.9 35.8 10 -2.6 0 0.0 0 0.0 0 0.0 7 33
15 A 38 ALA A T h < 3 TS+ 0 0 -73.9 -5.5 -175.9 99.3 89.0 68.4 11 -1.4 0 0.0 0 0.0 0 0.0 6 29
16 A 39 GLU E t < T - 0 0 -84.0 140.7 163.9 -155.7 58.5 137.0 13 -1.3 18 -0.6 0 0.0 0 0.0 8 29
17 A 40 LYS K + 0 0 -108.2 110.8 173.2 125.7 39.9 160.4 0 0.0 0 0.0 0 0.0 0 0.0 5 20
18 A 41 SER S - 0 0 -168.5 150.1 178.1 -129.7 66.4 150.2 16 -0.6 20 -1.0 0 0.0 0 0.0 6 20
19 A 42 ARG R S S S+ 0 0 -80.9 42.7 -174.8 28.7 115.8 96.4 0 0.0 0 0.0 0 0.0 0 0.0 4 21
20 A 43 GLY G S S S- 0 0 -162.5 -94.9 179.4 -112.2 105.1 94.8 18 -1.0 0 0.0 0 0.0 0 0.0 8 30
21 A 44 GLY G - 0 0 169.8 -156.9 177.7 -43.2 47.1 153.8 0 0.0 0 0.0 0 0.0 0 0.0 11 38
22 A 45 SER S E E AA - 70 0 -96.0 151.8 173.9 -135.1 47.5 135.2 70 -2.1 70 -3.1 0 0.0 0 0.0 13 42
23 A 46 SER S E E >AA T - 69 0 -93.1 160.9 171.3 -109.3 30.2 136.6 0 0.0 27 -2.4 0 0.0 0 0.0 10 43
24 A 47 ARG R H H > TS+ 0 0 -54.4 -28.8 176.2 54.7 124.0 33.1 68 -0.6 28 -1.9 0 0.0 0 0.0 10 48
25 A 48 GLN Q H H > TS+ 0 0 -69.1 -49.0 173.3 49.4 105.3 20.3 0 0.0 29 -3.1 0 0.0 0 0.0 7 33
26 A 49 SER S H H > TS+ 0 0 -53.5 -45.3 -177.2 48.9 112.7 22.0 0 0.0 30 -2.0 0 0.0 0 0.0 8 36
27 A 50 ILE I H H X TS+ 0 0 -72.2 -37.5 176.3 47.9 111.1 29.8 23 -2.4 31 -1.8 0 0.0 0 0.0 12 50
28 A 51 GLN Q H H X TS+ 0 0 -69.3 -45.0 178.5 49.9 112.6 16.5 24 -1.9 32 -2.5 0 0.0 0 0.0 11 44
29 A 52 LYS K H H X TS+ 0 0 -61.7 -31.5 179.3 46.1 113.6 27.9 25 -3.1 33 -2.0 0 0.0 0 0.0 8 33
30 A 53 TYR Y H H X TS+ 0 0 -71.4 -50.8 176.8 45.4 114.6 23.1 26 -2.0 34 -0.5 0 0.0 0 0.0 9 36
31 A 54 ILE I H H X > TS+ 0 0 -58.7 -48.0 178.2 49.3 113.8 22.0 27 -1.8 35 -1.6 0 0.0 34 -1.1 12 42
32 A 55 LYS K H H < 3 TS+ 0 0 -66.5 -37.1 176.2 47.5 112.7 22.1 28 -2.5 0 0.0 0 0.0 0 0.0 9 35
33 A 56 SER S H H < 3 TS+ 0 0 -81.1 4.0 177.7 35.2 121.6 60.3 29 -2.0 0 0.0 0 0.0 0 0.0 6 24
34 A 57 HIS H H H < < TS+ 0 0 -127.5 -7.2 -177.6 44.4 110.9 59.2 31 -1.1 0 0.0 30 -0.5 0 0.0 6 29
35 A 58 TYR Y S h < TS- 0 0 -138.0 163.3 -174.4 -103.3 82.8 154.2 31 -1.6 37 -1.6 0 0.0 0 0.0 7 29
36 A 59 LYS K + 0 0 -91.3 75.0 -178.9 162.3 58.4 127.9 1 -0.6 0 0.0 0 0.0 0 0.0 7 24
37 A 60 VAL V - 0 0 -95.9 159.1 -177.5 -129.6 29.3 127.7 35 -1.6 0 0.0 0 0.0 0 0.0 8 28
38 A 61 GLY G t > T - 0 0 -95.7 -170.2 -178.2 -83.2 37.8 101.0 0 0.0 41 -1.1 0 0.0 0 0.0 5 23
39 A 62 HIS H T T 3 TS+ 0 0 -76.1 -12.2 176.1 62.2 120.3 52.4 0 0.0 0 0.0 0 0.0 0 0.0 5 17
40 A 63 ASN N T h > 3 T + 0 0 -96.8 17.1 -176.2 107.6 69.8 75.3 0 0.0 44 -2.4 0 0.0 0 0.0 6 19
41 A 64 ALA A H H > < TS+ 0 0 -62.7 -36.3 172.4 60.1 70.8 38.8 38 -1.1 45 -3.2 0 0.0 0 0.0 9 36
42 A 65 ASP D H H > TS+ 0 0 -50.7 -52.7 173.6 41.5 111.1 23.6 0 0.0 46 -1.9 0 0.0 0 0.0 8 31
43 A 66 LEU L H H > TS+ 0 0 -61.0 -55.4 174.1 49.5 116.0 14.6 0 0.0 47 -2.5 0 0.0 0 0.0 7 26
44 A 67 GLN Q H H X TS+ 0 0 -58.7 -35.6 175.4 51.9 108.8 32.1 40 -2.4 48 -1.9 0 0.0 0 0.0 9 33
45 A 68 ILE I H H X TS+ 0 0 -71.8 -36.6 176.5 46.5 112.0 24.3 41 -3.2 49 -1.9 0 0.0 0 0.0 11 46
46 A 69 LYS K H H X TS+ 0 0 -66.3 -44.3 176.0 52.5 111.0 25.8 42 -1.9 50 -2.6 0 0.0 0 0.0 9 39
47 A 70 LEU L H H X TS+ 0 0 -56.9 -58.8 175.7 44.8 111.3 9.9 43 -2.5 51 -2.6 0 0.0 0 0.0 8 28
48 A 71 SER S H H X TS+ 0 0 -55.4 -43.0 175.4 52.0 112.2 32.1 44 -1.9 52 -3.1 0 0.0 0 0.0 10 39
49 A 72 ILE I H H X TS+ 0 0 -58.2 -41.8 178.4 49.9 110.0 16.8 45 -1.9 53 -1.7 0 0.0 0 0.0 11 45
50 A 73 ARG R H H X TS+ 0 0 -61.0 -42.5 173.9 41.8 117.1 20.4 46 -2.6 54 -1.7 0 0.0 0 0.0 8 32
51 A 74 ARG R H H X TS+ 0 0 -68.0 -39.2 -175.9 51.0 113.2 26.4 47 -2.6 55 -2.8 0 0.0 0 0.0 8 29
52 A 75 LEU L H H < >TS+ 0 0 -75.4 -19.5 -178.5 50.2 110.4 43.1 48 -3.1 58 -2.2 0 0.0 57 -1.6 11 35
53 A 76 LEU L H H < 5TS+ 0 0 -86.7 -42.3 168.4 46.3 112.8 29.5 49 -1.7 0 0.0 0 0.0 0 0.0 11 34
54 A 77 ALA A H H < 5TS+ 0 0 -61.9 -48.5 174.9 52.8 110.8 22.1 50 -1.7 0 0.0 0 0.0 0 0.0 7 19
55 A 78 ALA A T h < 5TS- 0 0 -63.1 -7.8 -173.0 -114.1 116.0 50.8 51 -2.8 0 0.0 0 0.0 0 0.0 7 21
56 A 79 GLY G T T 5TS+ 0 0 83.6 15.4 -173.8 109.6 87.1 56.3 0 0.0 0 0.0 0 0.0 0 0.0 8 20
57 A 80 VAL V S e 5555< 5-turns
3-turns >33< >33< >33< 3-turns
bridge-2 BBBB bridge-2
bridge-1 AA BBBB AA bridge-1
sheets AA AAAA AAAA sheets
4-turns >>>>XXXX<<<< >>>>XXXXX<<<< >>>>XXXXXXXX<<<< 4-turns
summary hHHHHHHHHHHht SS EEHHHHHHHHHHHh tThHHHHHHHHHHHHHHhTeEEEE SS eEEEEe summary
sequence SHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAK sequence
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