Secondary structure calculation program - copyright by David Keith Smith, 1989
1h5pA.pdb
1H5P NUCLEAR PROTEIN MOL_ID: 1; MOL_ID: 1;
Sequence length - 95
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 594 MET M 0 0 999.9 -25.0 -179.9 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 3 22
2 A 595 ASP D - 0 0 59.7 179.3 -179.9 -132.7 999.9 83.7 0 0.0 0 0.0 0 0.0 0 0.0 9 27
3 A 596 GLU E - 0 0 -129.4 -96.7 -179.4 -38.7 62.2 69.7 0 0.0 0 0.0 0 0.0 0 0.0 5 25
4 A 597 ASN N S S S+ 0 0 -118.0 -14.7 -179.9 84.5 112.7 59.3 0 0.0 6 -1.0 0 0.0 0 0.0 4 24
5 A 598 ILE I - 0 0 -96.6 94.3 179.7 -168.4 62.3 139.7 0 0.0 0 0.0 0 0.0 0 0.0 8 33
6 A 599 ASN N g > T - 0 0 -85.7 124.8 -179.5 -167.4 14.2 135.2 4 -1.0 9 -0.6 0 0.0 0 0.0 8 28
7 A 600 PHE F G G > TS+ 0 0 -88.8 -1.4 -179.9 91.0 72.7 63.8 0 0.0 10 -1.4 0 0.0 0 0.0 9 37
8 A 601 LYS K G G 3 T + 0 0 -72.2 -0.8 -179.7 77.2 69.4 61.7 0 0.0 0 0.0 0 0.0 0 0.0 5 26
9 A 602 GLN Q G G < TS- 0 0 -89.6 4.6 -179.9 -126.7 103.0 68.8 6 -0.6 0 0.0 0 0.0 0 0.0 6 23
10 A 603 SER S S e < TS+ 0 0 69.6 -16.5 179.9 76.0 91.1 76.2 7 -1.4 25 -2.0 0 0.0 0 0.0 8 26
11 A 604 GLU E E E AA - 24 0 -131.4 117.8 -179.9 -168.1 63.3 165.5 0 0.0 0 0.0 0 0.0 0 0.0 10 32
12 A 605 LEU L E E AA - 23 0 -107.9 126.4 180.0 -123.4 24.5 154.8 23 -2.0 23 -2.4 0 0.0 0 0.0 14 47
13 A 606 PRO P E E AA - 22 0 -69.6 125.4 179.6 -172.7 32.9 120.0 0 0.0 69 -0.7 0 0.0 0 0.0 10 45
14 A 607 VAL V E E AAB - 21 68 -119.1 155.6 -179.6 -166.3 13.2 147.5 21 -2.4 21 -2.0 0 0.0 0 0.0 13 59
15 A 608 THR T E E AAB - 20 67 -146.4 103.1 179.3 -177.8 4.6 144.9 67 -2.6 67 -1.7 0 0.0 17 -0.8 12 46
16 A 609 CYS C E E AA > TS- 19 0 -104.3 100.2 -179.7 -32.5 80.5 147.0 19 -1.9 19 -1.3 0 0.0 0 0.0 15 50
17 A 610 GLY G T T 3 TS- 0 0 55.8 55.2 -179.4 -43.5 125.8 16.3 15 -0.8 0 0.0 0 0.0 0 0.0 10 37
18 A 611 GLU E T T 3 TS+ 0 0 71.7 -5.4 179.5 122.1 115.9 68.2 0 0.0 20 -1.6 0 0.0 0 0.0 6 29
19 A 612 VAL V E E AA < T - 16 0 -90.1 76.7 -179.8 -167.3 49.5 126.1 16 -1.3 16 -1.9 0 0.0 0 0.0 9 41
20 A 613 LYS K E E AA + 15 0 -57.5 166.1 -179.9 166.6 12.4 91.6 18 -1.6 0 0.0 0 0.0 0 0.0 10 41
21 A 614 GLY G E E AA - 14 0 -171.9 171.2 179.9 -99.0 37.4 169.7 14 -2.0 14 -2.4 0 0.0 23 -0.6 12 45
22 A 615 THR T E E AAC - 13 38 -110.7 116.9 -179.5 -152.3 31.0 157.6 38 -1.4 38 -2.3 0 0.0 0 0.0 12 45
23 A 616 LEU L E E AAC - 12 37 -91.1 130.7 179.9 -144.4 7.9 137.9 12 -2.4 12 -2.0 21 -0.6 0 0.0 12 54
24 A 617 TYR Y E E >AA > T - 11 0 -97.1 127.4 -179.9 -155.3 5.4 145.0 36 -1.2 28 -1.9 0 0.0 27 -1.1 11 41
25 A 618 LYS K H H > 3 TS+ 0 0 -67.5 -32.8 -179.7 72.8 90.6 34.1 10 -2.0 29 -1.1 0 0.0 0 0.0 11 38
26 A 619 GLU E H H 4 3 TS+ 0 0 -54.8 -20.6 180.0 20.9 117.8 44.1 0 0.0 0 0.0 0 0.0 0 0.0 7 27
27 A 620 ARG R H H > X TS+ 0 0 -120.0 -22.2 -179.8 85.8 103.0 56.1 24 -1.1 30 -2.7 0 0.0 31 -0.8 10 31
28 A 621 PHE F H H < 3 TS+ 0 0 -53.2 -24.0 -179.8 79.6 73.3 42.5 24 -1.9 0 0.0 0 0.0 0 0.0 11 45
29 A 622 LYS K T h < 3 TS+ 0 0 -59.9 -14.6 -179.9 32.9 104.6 49.0 25 -1.1 0 0.0 0 0.0 0 0.0 8 30
30 A 623 GLN Q T g 4 X TS- 0 0 -115.9 -15.7 179.7 -173.7 89.4 58.2 27 -2.7 33 -0.9 0 0.0 0 0.0 8 27
31 A 624 GLY G G G < > TS+ 0 0 59.8 -117.3 -179.3 17.9 77.7 112.5 27 -0.8 34 -2.1 0 0.0 0 0.0 11 51
32 A 625 THR T G G 3 TS+ 0 0 -67.8 7.5 179.9 67.0 122.6 68.3 0 0.0 0 0.0 0 0.0 0 0.0 8 44
33 A 626 SER S G G < TS+ 0 0 -107.6 1.3 179.8 37.9 105.1 67.8 30 -0.9 0 0.0 0 0.0 0 0.0 6 29
34 A 627 LYS K S g < TS- 0 0 -156.6 122.1 180.0 -124.0 80.6 153.8 31 -2.1 36 -0.7 0 0.0 0 0.0 9 28
35 A 628 LYS K + 0 0 -68.8 108.1 -179.8 148.3 46.6 122.1 0 0.0 0 0.0 0 0.0 0 0.0 11 38
36 A 629 CYS C e + 0 0 -122.5 3.6 -180.0 99.0 40.0 72.0 34 -0.7 24 -1.2 45 -0.6 38 -0.7 15 45
37 A 630 ILE I E E ACD - 23 45 -99.6 110.9 -179.9 -159.2 57.4 147.5 45 -1.3 45 -2.5 0 0.0 39 -0.6 15 54
38 A 631 GLN Q E E ACD - 22 44 -92.7 120.9 179.5 -159.4 9.0 142.0 22 -2.3 22 -1.4 36 -0.7 0 0.0 12 41
39 A 632 SER S E E >A D> T - 0 43 -92.2 170.4 -179.9 -94.4 38.7 114.7 43 -2.7 42 -1.7 37 -0.6 43 -0.7 12 35
40 A 633 GLU E T T 4 3 TS+ 0 0 -57.8 -15.1 -179.9 74.6 120.2 49.0 0 0.0 0 0.0 0 0.0 0 0.0 6 22
41 A 634 ASP D T T 4 3 TS- 0 0 -83.5 15.9 -179.8 -113.4 115.4 77.1 0 0.0 0 0.0 0 0.0 0 0.0 5 19
42 A 635 LYS K T T 4 < TS+ 0 0 51.9 49.6 -179.3 114.2 81.1 22.1 39 -1.7 0 0.0 0 0.0 0 0.0 6 19
43 A 636 LYS K E E T - 0 0 -89.4 153.9 -179.8 -100.1 39.2 125.3 0 0.0 50 -3.1 0 0.0 0 0.0 13 51
47 A 640 PRO P H H > TS+ 0 0 -44.1 -21.3 179.6 43.9 128.2 44.4 0 0.0 51 -0.6 0 0.0 0 0.0 13 58
48 A 641 ARG R H H > TS+ 0 0 -90.4 -52.2 179.8 45.6 112.9 25.6 0 0.0 52 -1.4 0 0.0 0 0.0 9 44
49 A 642 GLU E H H > TS+ 0 0 -62.6 -24.5 179.4 51.9 115.4 39.9 0 0.0 53 -1.0 0 0.0 0 0.0 9 41
50 A 643 PHE F H H X TS+ 0 0 -79.1 -37.2 178.8 58.3 101.5 31.6 46 -3.1 54 -2.7 0 0.0 0 0.0 12 52
51 A 644 GLU E H H X >TS+ 0 0 -60.7 -31.8 179.8 54.4 104.3 34.2 47 -0.6 55 -2.6 0 0.0 56 -1.2 16 45
52 A 645 ILE I H H < 5TS+ 0 0 -69.6 -40.7 -179.5 41.1 112.3 28.1 48 -1.4 0 0.0 0 0.0 0 0.0 11 34
53 A 646 GLU E H H < 5TS+ 0 0 -78.1 -31.1 -179.9 39.7 123.2 36.5 49 -1.0 0 0.0 0 0.0 0 0.0 10 38
54 A 647 GLY G H H < 5TS+ 0 0 -83.7 -47.9 179.9 9.9 137.3 23.7 50 -2.7 0 0.0 0 0.0 0 0.0 12 39
55 A 648 ASP D T h < 5TS- 0 0 -94.1 -75.9 179.9 -98.9 104.4 27.7 51 -2.6 0 0.0 0 0.0 0 0.0 11 31
56 A 649 ARG R t TS+ 0 0 133.8 -25.7 180.0 82.6 111.0 87.3 0 0.0 60 -0.7 0 0.0 0 0.0 9 24
58 A 651 ALA A T T 3 T + 0 0 -86.0 -1.7 -180.0 93.7 64.8 63.3 0 0.0 0 0.0 0 0.0 0 0.0 6 21
59 A 652 SER S T T 3 T - 0 0 -59.4 -30.6 -180.0 -175.6 63.0 35.9 0 0.0 61 -2.7 0 0.0 0 0.0 10 24
60 A 653 LYS K t < T + 0 0 68.2 -71.7 179.9 77.4 59.8 112.8 57 -0.7 62 -0.7 0 0.0 0 0.0 5 25
61 A 654 ASN N h > T + 0 0 -74.0 112.5 -179.8 177.7 54.2 126.4 59 -2.7 65 -0.9 0 0.0 0 0.0 6 30
62 A 655 TRP W H H > TS+ 0 0 -86.4 -21.9 -179.6 73.6 72.9 46.4 60 -0.7 66 -1.6 0 0.0 0 0.0 11 41
63 A 656 LYS K H H 4 TS+ 0 0 -64.9 -18.9 -179.9 29.3 111.6 45.7 0 0.0 74 -2.9 0 0.0 0 0.0 11 46
64 A 657 LEU L H H 4 TS+ 0 0 -111.6 -25.8 -179.3 65.2 111.2 50.5 0 0.0 0 0.0 0 0.0 0 0.0 9 40
65 A 658 SER S H H < TS+ 0 0 -69.3 -27.7 -179.6 51.9 103.8 38.8 61 -0.9 0 0.0 0 0.0 0 0.0 13 43
66 A 659 ILE I h < T - 0 0 -115.1 146.1 179.3 -160.3 69.5 151.9 62 -1.6 73 -1.2 0 0.0 0 0.0 16 53
67 A 660 ARG R E E ABE - 15 72 -117.0 166.6 179.8 -151.6 6.4 137.2 15 -1.7 15 -2.6 0 0.0 0 0.0 13 50
68 A 661 CYS C E E ABE> TS- 14 71 -144.8 99.5 -179.9 -38.7 74.2 143.7 71 -1.4 71 -1.1 0 0.0 0 0.0 13 57
69 A 662 GLY G T e 3 TS- 0 0 74.4 -27.3 -180.0 -34.3 130.3 84.5 13 -0.7 0 0.0 0 0.0 0 0.0 9 43
70 A 663 GLY G T T 3 TS+ 0 0 172.3 -43.7 179.8 69.3 126.6 87.3 0 0.0 0 0.0 0 0.0 0 0.0 5 37
71 A 664 TYR Y E E AE < TS- 68 0 -102.5 141.5 180.0 -117.5 78.1 143.5 68 -1.1 68 -1.4 0 0.0 0 0.0 9 37
72 A 665 THR T E E >AE T - 67 0 -66.6 171.5 179.7 -101.0 32.9 95.3 0 0.0 76 -2.8 0 0.0 0 0.0 12 48
73 A 666 LEU L H H > TS+ 0 0 -64.8 -29.3 179.4 65.3 121.8 35.5 66 -1.2 77 -2.2 0 0.0 0 0.0 13 54
74 A 667 LYS K H H 4 TS+ 0 0 -58.9 -41.9 179.1 33.0 112.4 24.9 63 -2.9 0 0.0 0 0.0 0 0.0 9 41
75 A 668 VAL V H H > > TS+ 0 0 -81.4 -38.7 179.5 58.4 114.6 30.5 0 0.0 79 -2.2 0 0.0 78 -1.0 11 39
76 A 669 LEU L H H X 3 TS+ 0 0 -61.4 -26.7 179.0 45.1 110.5 38.1 72 -2.8 82 -2.2 0 0.0 80 -0.6 12 50
77 A 670 MET M H H < 3 TS+ 0 0 -91.2 -10.8 -179.4 52.1 113.1 56.7 73 -2.2 0 0.0 0 0.0 0 0.0 12 45
78 A 671 GLU E H H 4 < TS+ 0 0 -96.0 -25.8 -179.6 38.0 114.9 45.7 75 -1.0 0 0.0 0 0.0 0 0.0 11 33
79 A 672 ASN N H H < TS- 0 0 -88.9 -75.2 -179.8 -87.7 116.3 22.0 75 -2.2 0 0.0 0 0.0 0 0.0 10 36
80 A 673 LYS K S h < TS+ 0 0 -176.6 -18.3 -179.3 104.8 95.1 73.3 76 -0.6 0 0.0 0 0.0 0 0.0 9 38
81 A 674 PHE F S S S+ 0 0 -48.2 -36.9 179.8 45.3 88.4 33.4 0 0.0 0 0.0 0 0.0 0 0.0 8 46
82 A 675 LEU L S S S- 0 0 -114.3 138.6 179.8 -149.0 74.6 155.9 76 -2.2 0 0.0 0 0.0 0 0.0 11 49
83 A 676 PRO P + 0 0 -64.8 -92.7 179.7 138.4 40.1 17.8 0 0.0 0 0.0 0 0.0 0 0.0 7 30
84 A 677 GLU E - 0 0 61.3 161.1 179.9 -46.5 65.2 71.8 0 0.0 0 0.0 0 0.0 0 0.0 7 26
85 A 678 PRO P S S S- 0 0 -52.7 170.0 -179.9 -40.8 99.4 86.4 0 0.0 0 0.0 0 0.0 0 0.0 4 19
86 A 679 PRO P - 0 0 -39.3 102.8 -179.9 -164.7 59.3 94.9 0 0.0 0 0.0 0 0.0 0 0.0 5 18
87 A 680 SER S - 0 0 -57.7 -60.1 179.9 -68.2 55.9 13.0 0 0.0 0 0.0 0 0.0 0 0.0 7 23
88 A 681 THR T - 0 0 -156.9 -87.4 -180.0 -90.9 66.3 89.2 0 0.0 0 0.0 0 0.0 0 0.0 6 21
89 A 682 ARG R - 0 0 -174.6 -147.0 179.9 -41.0 53.9 146.1 0 0.0 0 0.0 0 0.0 0 0.0 6 16
90 A 683 LYS K S S S+ 0 0 -104.5 163.5 -179.9 30.3 107.9 129.9 0 0.0 0 0.0 0 0.0 0 0.0 4 13
91 A 684 LYS K S S S+ 0 0 57.4 43.9 179.9 162.6 82.4 25.7 0 0.0 0 0.0 0 0.0 0 0.0 4 13
92 A 685 VAL V - 0 0 -96.8 146.2 -179.8 -115.6 37.1 135.5 0 0.0 0 0.0 0 0.0 0 0.0 6 16
93 A 686 THR T S S S+ 0 0 -73.4 166.9 179.9 40.8 77.1 103.0 0 0.0 0 0.0 0 0.0 0 0.0 4 17
94 A 687 ILE I 0 0 65.8 134.3 180.0 999.9 999.9 51.9 0 0.0 0 0.0 0 0.0 0 0.0 6 23
95 A 688 LYS K 0 0 -111.0 999.9 999.9 999.9 999.9 110.9 0 0.0 0 0.0 0 0.0 0 0.0 6 29
1h5pA.pdb
1H5P NUCLEAR PROTEIN MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand S GGGSEEEEEETTEEEEEEHHHHTTGGGS EEETTTEEE HHHHHHHHT STT HHHH EETTEEHHHHHHHSSS S SS S Kabs/Sand
chirality --+--++-+-------+-+----+++++-+++-++---+-+----++++++++--++-++++++----+--++++++-++-+------++-+ chirality
bends S S SS SSS SSSSSSSSSS SSS SSSSSSSSS S SSSS SSSS SSSSSSSSSS S SS S bends
turns TTTTT TTTT TTTTTTTTTTT TTTTT TTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTT turns
5-turns >5555< 5-turns
3-turns >>3<< >33< >33X33X>3<< >33< >33< >33< >33< 3-turns
bridge-2 BB CC DDD EE bridge-2
bridge-1 AAAAAA AAAAAA CC DDD BB EE bridge-1
sheets AAAAAA AAAAAA AAA AAA AA AA sheets
4-turns >>4><<4< >444< >>>>XX<<<< >>44<< >>4>X<4<< 4-turns
summary S gGGGeEEEEEETTEEEEEEHHHHhgGGGg eEEETTTEEEhHHHHHHHHhttTTthHHHHhEEeTEEHHHHHHHhSS S SS S summary
sequence MDENINFKQSELPVTCGEVKGTLYKERFKQGTSKKCIQSEDKKWFTPREFEIEGDRGASKNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKVTIK sequence
10 20 30 40 50 60 70 80 90