Secondary structure calculation program - copyright by David Keith Smith, 1989
1go4E.pdb
1GO4 CELL CYCLE MOL_ID: 1; MOL_ID: 1;
Sequence length - 87
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 E 493 PHE F h > T 0 0 999.9 -164.5 179.3 999.9 999.9 999.9 0 0.0 5 -1.3 0 0.0 0 0.0 5 9
2 E 494 SER S H H > T + 0 0 -78.7 -59.1 -179.7 36.2 999.9 18.0 0 0.0 6 -2.0 0 0.0 0 0.0 5 9
3 E 495 ARG R H H > TS+ 0 0 -64.8 -38.0 179.1 48.7 122.2 25.7 0 0.0 7 -1.6 0 0.0 0 0.0 6 10
4 E 496 GLU E H H > > TS+ 0 0 -63.3 -63.3 -179.0 41.2 114.4 8.9 0 0.0 8 -1.9 0 0.0 7 -0.7 7 11
5 E 497 GLU E H H X 3 TS+ 0 0 -55.4 -30.9 178.7 62.5 109.9 34.2 1 -1.3 9 -3.7 0 0.0 0 0.0 8 13
6 E 498 ALA A H H X 3 TS+ 0 0 -59.9 -44.4 179.3 47.1 104.2 21.6 2 -2.0 10 -2.4 0 0.0 0 0.0 9 13
7 E 499 ASP D H H < < TS+ 0 0 -64.0 -39.2 179.7 43.9 116.3 27.6 3 -1.6 0 0.0 4 -0.7 0 0.0 8 14
8 E 500 THR T H H X TS+ 0 0 -74.8 -34.9 179.3 52.5 112.5 30.4 4 -1.9 12 -2.3 0 0.0 0 0.0 8 15
9 E 501 LEU L H H X TS+ 0 0 -67.8 -40.7 179.4 53.5 105.0 25.0 5 -3.7 13 -3.5 0 0.0 0 0.0 8 16
10 E 502 ARG R H H X TS+ 0 0 -66.6 -16.3 178.7 46.9 113.2 46.3 6 -2.4 14 -0.8 0 0.0 0 0.0 8 17
11 E 503 LEU L H H > TS+ 0 0 -89.2 -39.9 -179.7 45.9 113.5 33.3 0 0.0 15 -1.5 0 0.0 0 0.0 8 16
12 E 504 LYS K H H X TS+ 0 0 -68.9 -43.2 179.4 46.8 115.4 25.2 8 -2.3 16 -2.0 0 0.0 0 0.0 8 16
13 E 505 VAL V H H X TS+ 0 0 -65.6 -42.0 179.7 51.9 111.2 24.8 9 -3.5 17 -1.5 0 0.0 0 0.0 8 16
14 E 506 GLU E H H X TS+ 0 0 -64.2 -31.7 179.8 49.6 110.1 34.9 10 -0.8 18 -1.6 0 0.0 0 0.0 8 17
15 E 507 GLU E H H X TS+ 0 0 -74.2 -40.7 179.3 50.6 108.6 27.1 11 -1.5 19 -1.6 0 0.0 0 0.0 8 16
16 E 508 LEU L H H X TS+ 0 0 -65.6 -28.0 179.7 59.2 106.8 36.8 12 -2.0 20 -2.8 0 0.0 0 0.0 8 16
17 E 509 GLU E H H X TS+ 0 0 -64.0 -56.3 179.8 45.8 104.8 14.4 13 -1.5 21 -2.7 0 0.0 0 0.0 8 16
18 E 510 GLY G H H X TS+ 0 0 -57.3 -33.6 178.9 50.1 114.8 34.8 14 -1.6 22 -1.9 0 0.0 0 0.0 8 16
19 E 511 GLU E H H X TS+ 0 0 -68.5 -57.2 179.0 47.6 109.9 11.6 15 -1.6 23 -3.1 0 0.0 0 0.0 8 16
20 E 512 ARG R H H X TS+ 0 0 -48.7 -44.2 179.7 49.8 114.3 27.8 16 -2.8 24 -2.1 0 0.0 0 0.0 8 16
21 E 513 SER S H H X TS+ 0 0 -63.1 -43.7 -179.4 45.8 112.4 26.3 17 -2.7 25 -1.4 0 0.0 0 0.0 8 16
22 E 514 ARG R H H X TS+ 0 0 -70.0 -36.2 179.3 54.4 110.1 31.4 18 -1.9 26 -1.9 0 0.0 0 0.0 8 16
23 E 515 LEU L H H X TS+ 0 0 -63.5 -48.3 179.3 51.9 105.5 19.3 19 -3.1 27 -3.8 0 0.0 0 0.0 8 16
24 E 516 GLU E H H X TS+ 0 0 -54.8 -41.1 179.4 50.7 109.7 27.0 20 -2.1 28 -2.4 0 0.0 0 0.0 8 16
25 E 517 GLU E H H X TS+ 0 0 -63.6 -40.3 179.5 45.0 113.7 27.1 21 -1.4 29 -2.1 0 0.0 0 0.0 8 16
26 E 518 GLU E H H X TS+ 0 0 -68.3 -48.8 179.3 51.9 111.1 20.4 22 -1.9 30 -2.6 0 0.0 0 0.0 8 16
27 E 519 LYS K H H X TS+ 0 0 -54.3 -42.6 -179.9 50.4 110.5 25.6 23 -3.8 31 -1.9 0 0.0 0 0.0 8 16
28 E 520 ARG R H H X TS+ 0 0 -63.1 -46.7 -179.8 49.1 109.7 21.5 24 -2.4 32 -2.2 0 0.0 0 0.0 8 16
29 E 521 MET M H H X TS+ 0 0 -62.6 -37.9 178.5 50.9 109.8 29.3 25 -2.1 33 -1.2 0 0.0 0 0.0 8 16
30 E 522 LEU L H H X TS+ 0 0 -65.7 -38.1 179.0 51.7 109.7 27.0 26 -2.6 34 -2.6 0 0.0 0 0.0 8 15
31 E 523 GLU E H H X TS+ 0 0 -63.5 -40.9 179.3 50.8 108.1 26.6 27 -1.9 35 -2.0 0 0.0 0 0.0 8 17
32 E 524 ALA A H H X TS+ 0 0 -68.5 -23.3 179.2 50.4 111.2 43.4 28 -2.2 36 -0.9 0 0.0 0 0.0 8 16
33 E 525 GLN Q H H X TS+ 0 0 -79.0 -47.8 -179.8 48.4 109.3 22.9 29 -1.2 37 -1.3 0 0.0 0 0.0 8 15
34 E 526 LEU L H H < TS+ 0 0 -59.3 -41.8 -178.7 44.5 115.3 28.5 30 -2.6 0 0.0 0 0.0 0 0.0 7 16
35 E 527 GLU E H H < TS+ 0 0 -74.5 -32.0 -179.3 52.7 112.2 34.3 31 -2.0 0 0.0 0 0.0 0 0.0 7 15
36 E 528 ARG R H H < TS+ 0 0 -77.6 -21.4 -175.9 93.7 92.5 44.6 32 -0.9 0 0.0 0 0.0 0 0.0 6 13
37 E 529 ARG R S h < TS- 0 0 -81.1 166.4 -176.1 -121.9 75.6 102.6 33 -1.3 0 0.0 0 0.0 0 0.0 7 13
38 E 530 ALA A S S S+ 0 0 -72.9 -35.9 -179.2 80.3 89.2 40.2 0 0.0 40 -1.5 0 0.0 0 0.0 4 11
39 E 531 LEU L + 0 0 -80.8 88.8 -177.8 148.2 52.8 126.8 0 0.0 0 0.0 0 0.0 0 0.0 5 13
40 E 532 GLN Q + 0 0 -94.3 -37.5 -177.9 51.8 55.8 31.7 38 -1.5 42 -0.7 0 0.0 0 0.0 6 13
41 E 533 GLY G S S S+ 0 0 -103.6 62.8 -176.0 175.9 75.6 112.8 0 0.0 0 0.0 0 0.0 0 0.0 4 13
42 E 534 ASP D - 0 0 -69.4 153.2 -179.5 -123.2 28.3 100.6 40 -0.7 0 0.0 0 0.0 0 0.0 5 15
43 E 535 TYR Y - 0 0 -98.4 126.4 178.8 -161.9 17.2 146.5 0 0.0 45 -0.7 0 0.0 0 0.0 5 11
44 E 536 ASP D t > > T - 0 0 -111.2 99.4 -177.3 -171.5 5.4 150.1 0 0.0 47 -1.8 0 0.0 48 -1.6 6 11
45 E 537 GLN Q T T 4 3 TS+ 0 0 -69.0 -6.5 178.5 67.5 82.1 56.9 43 -0.7 0 0.0 0 0.0 0 0.0 6 10
46 E 538 SER S T T 4 3 TS+ 0 0 -84.6 -14.4 -179.3 23.5 117.6 50.0 0 0.0 0 0.0 0 0.0 0 0.0 4 8
47 E 539 ARG R T T 4 < TS+ 0 0 -122.5 -11.7 -175.8 49.4 123.4 59.0 44 -1.8 0 0.0 0 0.0 0 0.0 5 10
48 E 540 THR T t < T + 0 0 -137.3 146.2 170.7 170.4 44.5 163.8 44 -1.6 0 0.0 0 0.0 0 0.0 7 11
49 E 541 LYS K - 0 0 -141.7 162.4 -178.3 -129.3 28.3 160.7 0 0.0 0 0.0 0 0.0 0 0.0 5 11
50 E 542 VAL V - 0 0 -119.1 126.4 -179.6 -172.0 25.4 167.3 0 0.0 0 0.0 0 0.0 0 0.0 4 12
51 E 543 LEU L + 0 0 -116.3 155.6 175.5 163.2 10.3 142.2 0 0.0 0 0.0 0 0.0 0 0.0 4 10
52 E 544 HIS H - 0 0 -158.2 165.5 176.6 -82.2 46.4 163.9 0 0.0 0 0.0 0 0.0 0 0.0 4 12
53 E 545 MET M - 0 0 -76.1 131.7 -178.8 -136.3 32.9 128.5 0 0.0 0 0.0 0 0.0 0 0.0 5 11
54 E 546 SER S S S S+ 0 0 -57.1 -34.6 178.0 44.2 98.4 32.7 0 0.0 56 -0.5 0 0.0 0 0.0 5 13
55 E 547 LEU L S S S+ 0 0 -112.4 125.8 -174.7 144.8 82.2 163.6 0 0.0 0 0.0 0 0.0 0 0.0 6 13
56 E 548 ASN N h > T - 0 0 -151.6 173.8 -178.5 -80.2 64.8 159.0 54 -0.5 60 -2.5 0 0.0 0 0.0 7 13
57 E 549 PRO P H H > TS+ 0 0 -54.5 -32.4 -179.9 48.8 126.4 32.6 0 0.0 61 -2.3 0 0.0 0 0.0 6 13
58 E 550 THR T H H > TS+ 0 0 -75.4 -42.5 178.4 47.1 110.2 24.0 0 0.0 62 -2.4 0 0.0 0 0.0 6 14
59 E 551 SER S H H > TS+ 0 0 -63.7 -38.1 179.0 48.4 115.9 21.1 0 0.0 63 -2.0 0 0.0 0 0.0 9 15
60 E 552 VAL V H H X TS+ 0 0 -65.2 -46.0 -179.4 49.2 110.9 21.0 56 -2.5 64 -2.4 0 0.0 0 0.0 9 16
61 E 553 ALA A H H X TS+ 0 0 -62.6 -40.9 -179.5 50.6 110.6 22.9 57 -2.3 65 -2.4 0 0.0 0 0.0 8 15
62 E 554 ARG R H H X TS+ 0 0 -64.2 -40.3 178.5 48.9 110.7 24.0 58 -2.4 66 -2.1 0 0.0 0 0.0 8 16
63 E 555 GLN Q H H X TS+ 0 0 -65.1 -41.1 178.0 51.1 110.3 23.2 59 -2.0 67 -2.4 0 0.0 0 0.0 8 17
64 E 556 ARG R H H X TS+ 0 0 -60.1 -42.4 179.4 52.9 108.5 26.9 60 -2.4 68 -2.9 0 0.0 0 0.0 8 18
65 E 557 LEU L H H X TS+ 0 0 -61.3 -42.8 178.8 48.8 108.9 25.2 61 -2.4 69 -2.7 0 0.0 0 0.0 8 16
66 E 558 ARG R H H X TS+ 0 0 -63.5 -44.2 179.1 47.2 113.2 20.2 62 -2.1 70 -2.5 0 0.0 0 0.0 8 16
67 E 559 GLU E H H X TS+ 0 0 -63.6 -42.6 177.2 47.8 113.4 24.7 63 -2.4 71 -2.9 0 0.0 0 0.0 8 16
68 E 560 ASP D H H X TS+ 0 0 -64.2 -42.7 177.9 52.2 110.4 24.5 64 -2.9 72 -2.8 0 0.0 0 0.0 8 16
69 E 561 HIS H H H X TS+ 0 0 -57.3 -47.6 179.5 45.7 112.6 18.8 65 -2.7 73 -2.3 0 0.0 0 0.0 8 16
70 E 562 SER S H H X TS+ 0 0 -59.3 -51.5 179.9 49.8 112.7 18.3 66 -2.5 74 -2.9 0 0.0 0 0.0 8 16
71 E 563 GLN Q H H X TS+ 0 0 -55.1 -44.3 179.4 45.1 113.4 27.4 67 -2.9 75 -1.8 0 0.0 0 0.0 8 16
72 E 564 LEU L H H X TS+ 0 0 -66.7 -37.1 179.6 54.6 112.2 29.4 68 -2.8 76 -2.2 0 0.0 0 0.0 8 17
73 E 565 GLN Q H H X TS+ 0 0 -59.3 -52.8 -179.4 43.6 110.3 19.6 69 -2.3 77 -1.7 0 0.0 0 0.0 8 17
74 E 566 ALA A H H X TS+ 0 0 -64.9 -33.1 179.9 54.1 112.5 36.0 70 -2.9 78 -2.2 0 0.0 0 0.0 8 16
75 E 567 GLU E H H X TS+ 0 0 -69.6 -41.4 179.2 51.9 105.5 26.6 71 -1.8 79 -2.8 0 0.0 0 0.0 8 16
76 E 568 CYS C H H X TS+ 0 0 -60.6 -41.9 179.3 49.4 110.8 24.9 72 -2.2 80 -2.1 0 0.0 0 0.0 8 16
77 E 569 GLU E H H X TS+ 0 0 -63.0 -45.2 -179.6 50.3 110.7 22.0 73 -1.7 81 -1.5 0 0.0 0 0.0 8 16
78 E 570 ARG R H H < TS+ 0 0 -59.4 -53.3 -179.3 48.6 110.2 16.3 74 -2.2 0 0.0 0 0.0 0 0.0 8 16
79 E 571 LEU L H H X > TS+ 0 0 -55.1 -49.9 179.6 42.0 115.7 22.5 75 -2.8 83 -2.4 0 0.0 82 -1.8 8 16
80 E 572 ARG R H H X 3 TS+ 0 0 -69.2 -20.4 178.1 64.3 108.0 40.1 76 -2.1 84 -1.6 0 0.0 0 0.0 8 15
81 E 573 GLY G H H < 3 TS+ 0 0 -82.1 10.2 178.5 36.0 111.4 72.9 77 -1.5 0 0.0 0 0.0 0 0.0 8 15
82 E 574 LEU L H H 4 < TS+ 0 0 -127.2 -37.1 179.1 55.0 112.1 57.1 79 -1.8 0 0.0 0 0.0 0 0.0 8 13
83 E 575 LEU L H H < > TS+ 0 0 -67.9 -35.1 180.0 57.8 104.4 30.4 79 -2.4 86 -0.7 0 0.0 0 0.0 8 12
84 E 576 ARG R T h < 3 TS+ 0 0 -61.5 -42.9 -179.2 54.3 103.0 24.6 80 -1.6 86 -0.9 0 0.0 0 0.0 7 11
85 E 577 ALA A T T 3 TS+ 0 0 -91.7 56.3 175.5 53.9 99.5 109.6 0 0.0 0 0.0 0 0.0 0 0.0 6 10
86 E 578 MET M t < T 0 0 -150.0 -10.2 166.5 999.9 999.9 97.8 84 -0.9 0 0.0 83 -0.7 0 0.0 5 9
87 E 579 GLU E 0 0 86.7 999.9 999.9 999.9 999.9 115.6 0 0.0 0 0.0 0 0.0 0 0.0 4 8
1go4E.pdb
1GO4 CELL CYCLE MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS S TTT SS HHHHHHHHHHHHHHHHHHHHHHHHHHHTT Kabs/Sand
chirality +++++++++++++++++++++++++++++++++++-++++---++++--+--++-+++++++++++++++++++++++++++++ chirality
bends SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS S SSS SS SSSSSSSSSSSSSSSSSSSSSSSSSSSSS bends
turns TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT turns
5-turns 5-turns
3-turns >33< >33< >33<>33< 3-turns
bridge-2 bridge-2
bridge-1 bridge-1
sheets sheets
4-turns >>>>XXXXXXXXXXXXXXXXXXXXXXXX<<<< >444< >>>>XXXXXXXXXXXXXXXXXX