Secondary structure calculation program - copyright by David Keith Smith, 1989
1gl2A.pdb
1GL2 MEMBRANE PROTEIN MOL_ID: 1; MOL_ID: 1;
Sequence length - 54
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 11 ARG R h > T 0 0 999.9 132.5 -179.9 999.9 999.9 999.9 0 0.0 5 -1.7 0 0.0 0 0.0 4 8
2 A 12 VAL V H H > T + 0 0 -77.6 -31.1 179.7 57.6 999.9 36.9 0 0.0 6 -2.1 0 0.0 0 0.0 5 9
3 A 13 ARG R H H > TS+ 0 0 -66.2 -42.9 179.8 46.5 107.8 24.7 0 0.0 7 -1.8 0 0.0 0 0.0 6 10
4 A 14 ASN N H H > TS+ 0 0 -63.3 -52.7 -179.8 49.8 111.9 15.3 0 0.0 8 -2.5 0 0.0 0 0.0 7 11
5 A 15 LEU L H H X TS+ 0 0 -53.7 -41.1 179.4 54.2 109.1 28.0 1 -1.7 9 -2.4 0 0.0 0 0.0 8 12
6 A 16 GLN Q H H X TS+ 0 0 -60.8 -42.8 180.0 47.6 108.9 26.6 2 -2.1 10 -1.8 0 0.0 0 0.0 8 13
7 A 17 SER S H H X TS+ 0 0 -65.9 -43.8 179.7 48.7 112.2 24.7 3 -1.8 11 -2.0 0 0.0 0 0.0 8 14
8 A 18 GLU E H H X TS+ 0 0 -64.4 -38.7 179.4 51.9 110.2 28.5 4 -2.5 12 -2.2 0 0.0 0 0.0 8 15
9 A 19 VAL V H H X TS+ 0 0 -66.0 -38.1 178.9 50.2 108.6 27.6 5 -2.4 13 -2.6 0 0.0 0 0.0 8 16
10 A 20 GLU E H H X TS+ 0 0 -66.5 -37.1 179.0 51.0 110.7 27.2 6 -1.8 14 -2.1 0 0.0 0 0.0 8 16
11 A 21 GLY G H H X TS+ 0 0 -66.9 -38.5 178.8 48.9 109.9 28.4 7 -2.0 15 -2.4 0 0.0 0 0.0 8 16
12 A 22 VAL V H H X TS+ 0 0 -67.2 -43.3 179.5 51.1 110.1 22.1 8 -2.2 16 -2.9 0 0.0 0 0.0 8 16
13 A 23 LYS K H H X TS+ 0 0 -60.2 -39.4 -179.8 48.4 111.8 24.8 9 -2.6 17 -2.1 0 0.0 0 0.0 8 16
14 A 24 ASN N H H X TS+ 0 0 -66.2 -45.4 179.7 45.0 113.8 22.4 10 -2.1 18 -1.7 0 0.0 0 0.0 8 16
15 A 25 ILE I H H X TS+ 0 0 -63.9 -49.2 -179.2 45.9 116.1 21.2 11 -2.4 19 -1.5 0 0.0 0 0.0 8 16
16 A 26 MET M H H X TS+ 0 0 -66.3 -34.7 178.4 54.7 108.7 32.3 12 -2.9 20 -2.1 0 0.0 0 0.0 8 17
17 A 27 THR T H H X TS+ 0 0 -64.8 -38.2 178.8 49.3 109.4 23.8 13 -2.1 21 -1.7 0 0.0 0 0.0 8 16
18 A 28 GLN Q H H X TS+ 0 0 -67.1 -31.4 178.9 54.6 108.0 35.0 14 -1.7 22 -1.8 0 0.0 0 0.0 8 16
19 A 29 ASN N H H X TS+ 0 0 -70.1 -37.4 177.6 52.0 104.8 29.3 15 -1.5 23 -2.1 0 0.0 0 0.0 8 16
20 A 30 VAL V H H X TS+ 0 0 -64.9 -35.8 178.4 50.7 109.7 26.7 16 -2.1 24 -2.1 0 0.0 0 0.0 8 16
21 A 31 GLU E H H X TS+ 0 0 -66.7 -37.1 178.7 52.1 108.2 28.7 17 -1.7 25 -2.1 0 0.0 0 0.0 8 16
22 A 32 ARG R H H X TS+ 0 0 -65.3 -36.5 -179.6 46.7 111.8 28.4 18 -1.8 26 -2.2 0 0.0 0 0.0 8 16
23 A 33 ILE I H H X TS+ 0 0 -76.3 -30.9 177.2 52.5 109.1 34.9 19 -2.1 27 -1.9 0 0.0 0 0.0 8 17
24 A 34 LEU L H H X TS+ 0 0 -68.6 -36.7 178.9 46.5 113.5 26.5 20 -2.1 28 -1.5 0 0.0 0 0.0 8 16
25 A 35 ALA A H H X TS+ 0 0 -70.6 -38.9 -179.7 53.1 109.1 27.0 21 -2.1 29 -2.6 0 0.0 0 0.0 8 17
26 A 36 ARG R H H X TS+ 0 0 -65.1 -32.8 179.5 56.9 104.9 30.3 22 -2.2 30 -2.6 0 0.0 0 0.0 8 16
27 A 37 GLY G H H X TS+ 0 0 -63.3 -42.6 179.0 45.3 108.8 23.6 23 -1.9 31 -2.0 0 0.0 0 0.0 8 16
28 A 38 GLU E H H X TS+ 0 0 -64.9 -47.5 -179.3 47.7 114.7 19.6 24 -1.5 32 -2.3 0 0.0 0 0.0 8 16
29 A 39 ASN N H H X TS+ 0 0 -63.7 -34.0 179.1 51.2 111.4 32.3 25 -2.6 33 -2.4 0 0.0 0 0.0 8 16
30 A 40 LEU L H H X TS+ 0 0 -71.4 -38.6 178.6 48.5 109.9 28.1 26 -2.6 34 -2.8 0 0.0 0 0.0 8 16
31 A 41 ASP D H H X TS+ 0 0 -65.7 -42.1 179.2 49.5 112.4 23.1 27 -2.0 35 -2.1 0 0.0 0 0.0 8 16
32 A 42 HIS H H H X TS+ 0 0 -60.4 -49.2 179.1 45.9 113.5 18.4 28 -2.3 36 -1.8 0 0.0 0 0.0 8 17
33 A 43 LEU L H H X TS+ 0 0 -61.5 -42.2 179.9 55.0 109.5 25.3 29 -2.4 37 -2.1 0 0.0 0 0.0 8 16
34 A 44 ARG R H H X TS+ 0 0 -59.8 -39.6 179.7 51.4 106.3 26.5 30 -2.8 38 -1.5 0 0.0 0 0.0 8 16
35 A 45 ASN N H H X TS+ 0 0 -63.4 -39.6 -180.0 51.2 109.0 25.4 31 -2.1 39 -2.0 0 0.0 0 0.0 8 16
36 A 46 LYS K H H X TS+ 0 0 -65.4 -36.7 179.5 50.8 108.8 30.1 32 -1.8 40 -2.0 0 0.0 0 0.0 8 16
37 A 47 THR T H H X TS+ 0 0 -73.0 -24.4 178.2 53.5 107.5 39.9 33 -2.1 41 -2.3 0 0.0 0 0.0 8 16
38 A 48 GLU E H H X TS+ 0 0 -74.5 -39.7 177.7 47.5 109.9 25.5 34 -1.5 42 -2.1 0 0.0 0 0.0 8 16
39 A 49 ASP D H H X TS+ 0 0 -63.9 -39.5 -179.6 50.4 113.1 26.6 35 -2.0 43 -2.2 0 0.0 0 0.0 8 16
40 A 50 LEU L H H X TS+ 0 0 -65.0 -44.2 -179.2 48.0 110.0 24.5 36 -2.0 44 -1.9 0 0.0 0 0.0 8 16
41 A 51 GLU E H H X TS+ 0 0 -65.5 -37.4 179.5 52.7 110.9 27.7 37 -2.3 45 -1.5 0 0.0 0 0.0 8 16
42 A 52 ALA A H H X TS+ 0 0 -63.1 -48.2 179.7 48.0 109.1 20.9 38 -2.1 46 -1.8 0 0.0 0 0.0 8 16
43 A 53 THR T H H X TS+ 0 0 -61.3 -37.1 -179.5 55.5 108.5 30.3 39 -2.2 47 -2.6 0 0.0 0 0.0 8 16
44 A 54 SER S H H X TS+ 0 0 -66.4 -31.9 178.9 53.2 104.6 33.6 40 -1.9 48 -2.4 0 0.0 0 0.0 8 16
45 A 55 GLU E H H X TS+ 0 0 -67.6 -43.1 179.0 47.5 110.0 22.9 41 -1.5 49 -2.7 0 0.0 0 0.0 8 16
46 A 56 HIS H H H X TS+ 0 0 -61.2 -47.8 179.9 51.3 111.2 20.0 42 -1.8 50 -3.1 0 0.0 0 0.0 8 16
47 A 57 PHE F H H X TS+ 0 0 -55.3 -46.8 179.9 47.1 111.8 22.4 43 -2.6 51 -1.9 0 0.0 0 0.0 8 15
48 A 58 LYS K H H X TS+ 0 0 -61.4 -46.6 -179.9 47.8 113.7 21.9 44 -2.4 52 -1.9 0 0.0 0 0.0 8 14
49 A 59 THR T H H X TS+ 0 0 -60.6 -47.8 179.9 48.8 111.7 23.2 45 -2.7 53 -1.1 0 0.0 0 0.0 8 13
50 A 60 THR T H H X TS+ 0 0 -62.8 -35.1 179.6 52.3 110.4 32.6 46 -3.1 54 -1.4 0 0.0 0 0.0 8 12
51 A 61 SER S H H < TS+ 0 0 -69.8 -36.8 179.9 57.5 102.9 29.6 47 -1.9 0 0.0 0 0.0 0 0.0 7 11
52 A 62 GLN Q H H < TS+ 0 0 -63.3 -27.5 -179.1 54.5 105.4 36.3 48 -1.9 0 0.0 0 0.0 0 0.0 6 10
53 A 63 LYS K H H < T 0 0 -72.6 -52.6 -179.3 999.9 999.9 18.2 49 -1.1 0 0.0 0 0.0 0 0.0 5 9
54 A 64 VAL V h < T 0 0 -51.3 999.9 999.9 999.9 999.9 999.9 50 -1.4 0 0.0 0 0.0 0 0.0 4 8
1gl2A.pdb
1GL2 MEMBRANE PROTEIN MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Kabs/Sand
chirality +++++++++++++++++++++++++++++++++++++++++++++++++++ chirality
bends SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS bends
turns TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT turns
5-turns 5-turns
3-turns 3-turns
bridge-2 bridge-2
bridge-1 bridge-1
sheets sheets
4-turns >>>>XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX<<<< 4-turns
summary hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh summary
sequence RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKV sequence
10 20 30 40 50