Secondary structure calculation program - copyright by David Keith Smith, 1989
1fsb-.pdb
1FSB CELL ADHESION PROTEIN MOL_ID: 1; MOL_ID: 1;
Sequence length - 40
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 1 THR T 0 0 999.9 135.4 -170.8 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 5 23
2 2 ALA A t > T + 0 0 -173.9 -163.3 -169.4 4.4 999.9 149.3 0 0.0 5 -0.6 0 0.0 0 0.0 7 23
3 3 SER S T T 3 TS- 0 0 -53.4 106.0 -173.6 -44.4 118.1 99.0 0 0.0 0 0.0 0 0.0 0 0.0 11 24
4 4 CYS C T T 3 TS+ 0 0 25.3 91.1 170.0 152.9 88.6 27.3 0 0.0 0 0.0 0 0.0 0 0.0 9 26
5 5 GLN Q t X T - 0 0 -121.3 -165.4 -170.6 -65.1 61.2 121.2 2 -0.6 8 -1.4 0 0.0 0 0.0 7 23
6 6 ASP D T T 3 TS+ 0 0 -52.5 -52.2 178.3 28.1 132.7 25.1 0 0.0 0 0.0 0 0.0 0 0.0 5 18
7 7 MET M T T 3 TS+ 0 0 -111.2 59.9 169.4 151.2 74.6 119.5 0 0.0 0 0.0 0 0.0 0 0.0 8 25
8 8 SER S S t < TS- 0 0 -42.0 -84.1 -178.4 -14.3 86.5 10.7 5 -1.4 0 0.0 0 0.0 0 0.0 14 29
9 9 CYS C S t > TS- 0 0 -127.4 63.0 -173.4 -64.3 117.7 118.1 0 0.0 12 -1.1 0 0.0 0 0.0 12 33
10 10 SER S T T 3 TS- 0 0 60.9 24.9 -171.3 -79.6 86.5 41.7 0 0.0 0 0.0 0 0.0 0 0.0 9 30
11 11 LYS K T T 3 TS+ 0 0 44.6 47.7 -173.9 114.2 113.8 23.0 0 0.0 0 0.0 0 0.0 0 0.0 8 32
12 12 GLN Q S e < TS+ 0 0 -133.9 29.3 -171.5 18.8 71.6 91.1 9 -1.1 27 -1.3 0 0.0 0 0.0 10 29
13 13 GLY G E E AA S- 26 0 172.6 170.5 -172.2 -81.5 82.7 167.4 0 0.0 0 0.0 0 0.0 0 0.0 12 33
14 14 GLU E E E AA - 25 0 -105.7 145.0 -176.6 -113.4 39.7 137.7 25 -1.3 25 -2.4 0 0.0 0 0.0 11 33
15 15 CYS C E E AA - 24 0 -78.3 132.0 170.6 -167.7 18.3 121.2 0 0.0 0 0.0 0 0.0 0 0.0 12 29
16 16 LEU L e - 0 0 -113.4 77.4 -170.1 -152.7 25.7 131.6 23 -2.2 0 0.0 0 0.0 0 0.0 8 27
17 17 GLU E - 0 0 -56.2 163.5 -170.1 -168.3 14.1 82.0 0 0.0 0 0.0 0 0.0 0 0.0 10 21
18 18 THR T - 0 0 -142.8 -170.7 -171.6 -58.4 45.3 133.5 21 -2.8 0 0.0 0 0.0 0 0.0 8 17
19 19 ILE I S S S- 0 0 -65.5 -4.4 171.0 -14.3 131.3 54.9 0 0.0 0 0.0 0 0.0 0 0.0 5 11
20 20 GLY G S S S+ 0 0 -177.7 31.2 -170.7 21.8 138.1 79.2 0 0.0 0 0.0 0 0.0 0 0.0 6 13
21 21 ASN N S S S- 0 0 -168.3 -154.9 169.4 -123.0 70.1 137.2 0 0.0 18 -2.8 0 0.0 0 0.0 8 19
22 22 TYR Y - 0 0 -160.8 -179.7 169.4 -144.7 5.9 168.8 0 0.0 0 0.0 0 0.0 0 0.0 12 27
23 23 THR T e - 0 0 -137.1 -164.0 -170.6 -101.4 26.3 134.4 0 0.0 16 -2.2 0 0.0 0 0.0 8 32
24 24 CYS C E E AA - 15 0 -136.1 131.5 170.7 -161.9 9.3 168.1 0 0.0 26 -0.8 0 0.0 0 0.0 13 34
25 25 SER S E E AA - 14 0 -105.6 86.5 -170.8 -138.5 36.0 142.4 14 -2.4 14 -1.3 0 0.0 0 0.0 8 30
26 26 CYS C E E AA - 13 0 -53.9 130.7 171.2 -111.5 17.2 97.9 24 -0.8 0 0.0 0 0.0 0 0.0 12 29
27 27 TYR Y e > T - 0 0 -51.9 156.4 -178.2 -84.1 45.8 97.4 12 -1.3 30 -1.6 0 0.0 29 -0.8 10 26
28 28 PRO P T T 3 TS+ 0 0 -72.7 102.8 -169.7 38.0 119.4 124.3 0 0.0 0 0.0 0 0.0 0 0.0 5 21
29 29 GLY G T e 3 TS+ 0 0 135.0 -22.6 174.7 73.8 106.3 84.4 27 -0.8 39 -3.1 0 0.0 0 0.0 7 21
30 30 PHE F E E BB < T + 38 0 -114.7 167.6 179.6 179.1 56.2 140.9 27 -1.6 0 0.0 0 0.0 0 0.0 12 22
31 31 TYR Y E E BB + 37 0 -159.9 177.7 -170.9 81.8 27.9 161.2 37 -1.2 37 -2.2 0 0.0 0 0.0 13 23
32 32 GLY G S t > TS- 0 0 97.9 159.7 175.6 -68.4 88.2 100.0 0 0.0 35 -1.7 0 0.0 0 0.0 8 23
33 33 PRO P T T 3 TS+ 0 0 -64.3 -0.1 170.5 29.6 139.3 65.4 0 0.0 0 0.0 0 0.0 0 0.0 6 26
34 34 GLU E T T 3 TS- 0 0 -138.4 18.9 -171.1 -109.9 112.9 81.9 0 0.0 0 0.0 0 0.0 0 0.0 9 33
35 35 CYS C S t < TS+ 0 0 45.5 49.8 -172.6 142.5 73.9 22.4 32 -1.7 0 0.0 0 0.0 0 0.0 15 28
36 36 GLU E + 0 0 -99.8 -10.7 173.8 66.1 46.8 56.4 0 0.0 0 0.0 0 0.0 0 0.0 11 25
37 37 TYR Y E E BB - 31 0 -104.8 163.8 176.5 -146.4 68.2 133.5 31 -2.2 31 -1.2 0 0.0 0 0.0 7 21
38 38 VAL V E E BB - 30 0 -131.4 137.9 171.6 -144.5 3.9 173.8 0 0.0 0 0.0 0 0.0 0 0.0 8 19
39 39 ARG R e 0 0 -75.4 -170.4 175.6 999.9 999.9 94.0 29 -3.1 0 0.0 0 0.0 0 0.0 6 14
40 40 GLU E 0 0 -53.9 999.9 999.9 999.9 999.9 5.7 0 0.0 0 0.0 0 0.0 0 0.0 3 10
1fsb-.pdb
1FSB CELL ADHESION PROTEIN MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand TT TTSSTTSEEE SSS EEE TTEESTTS EE Kabs/Sand
chirality +-+-++---++-------+-------++++-+-++-- chirality
bends SS SSSSSSSS SSS SS SSSS bends
turns TTTTTTTTTTT TTTT TTTT turns
5-turns 5-turns
3-turns >33X33<>33< >33< >33< 3-turns
bridge-2 bridge-2
bridge-1 AAA AAA BB BB bridge-1
sheets AAA AAA BB BB sheets
4-turns 4-turns
summary tTTtTTttTTeEEEe SSS eEEEeTeEEtTTt EEe summary
sequence TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRE sequence
10 20 30 40