Secondary structure calculation program - copyright by David Keith Smith, 1989
1f02T.pdb
1F02 CELL ADHESION MOL_ID: 1; MOL_ID: 1;
Sequence length - 66
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 T 271 MET M 0 0 999.9 -61.0 178.9 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 5 15
2 T 272 ASP D + 0 0 -131.5 16.4 -180.0 82.0 999.9 82.9 0 0.0 0 0.0 0 0.0 0 0.0 7 19
3 T 273 GLN Q S h > > TS+ 0 0 -91.3 -34.7 179.3 60.6 81.3 35.8 0 0.0 7 -2.6 0 0.0 6 -1.6 7 20
4 T 274 ALA A H H > 3>TS+ 0 0 -61.9 -26.2 179.3 76.5 88.0 37.3 0 0.0 8 -1.5 0 0.0 9 -0.7 12 24
5 T 275 ALA A H H 4 35TS+ 0 0 -64.5 5.3 179.8 23.6 113.4 65.3 0 0.0 0 0.0 0 0.0 0 0.0 13 27
6 T 276 ASN N H H > <5TS+ 0 0 -134.8 -47.9 180.0 60.5 116.7 59.7 3 -1.6 10 -4.7 0 0.0 0 0.0 12 29
7 T 277 ALA A H H X 5TS+ 0 0 -51.0 -60.1 -179.2 38.9 112.6 17.5 3 -2.6 11 -2.8 0 0.0 0 0.0 10 28
8 T 278 ALA A H H X 5TS+ 0 0 -59.0 -41.9 179.5 43.1 123.5 27.8 4 -1.5 12 -1.3 0 0.0 0 0.0 13 31
9 T 279 GLU E H H > TS+ 0 0 -66.4 -42.4 -179.9 52.3 106.5 23.8 13 -3.0 21 -1.2 0 0.0 20 -0.5 10 35
18 T 288 GLN Q H H X 3 TS+ 0 0 -60.6 -44.0 -179.2 48.4 109.8 22.1 14 -3.7 22 -0.5 0 0.0 0 0.0 8 27
19 T 289 GLU E H H < 3 TS+ 0 0 -69.9 -18.3 -179.7 66.9 101.6 46.5 15 -1.8 0 0.0 0 0.0 0 0.0 8 25
20 T 290 ALA A H H < X TS+ 0 0 -69.5 -41.6 -179.0 51.6 96.8 25.5 16 -0.9 23 -1.1 17 -0.5 0 0.0 10 30
21 T 291 PHE F H H < 3 TS+ 0 0 -71.2 -17.0 179.0 78.2 88.5 48.1 17 -1.2 0 0.0 0 0.0 0 0.0 10 26
22 T 292 LYS K T h < 3 TS+ 0 0 -71.3 5.0 179.3 58.2 96.5 63.3 18 -0.5 0 0.0 0 0.0 0 0.0 6 21
23 T 293 ASN N S g X TS- 0 0 -139.7 112.8 -179.6 -156.8 72.0 160.8 20 -1.1 26 -0.6 0 0.0 0 0.0 8 22
24 T 294 PRO P G G > TS+ 0 0 -55.8 -36.6 179.7 74.7 86.8 35.8 0 0.0 27 -1.4 0 0.0 0 0.0 6 23
25 T 295 GLU E G G 3 TS+ 0 0 -40.8 -60.2 -178.3 48.9 94.4 24.9 0 0.0 0 0.0 0 0.0 0 0.0 4 23
26 T 296 ASN N G e < TS+ 0 0 -58.1 -23.9 -178.1 90.4 99.3 47.6 23 -0.6 44 -3.2 0 0.0 0 0.0 10 27
27 T 297 GLN Q E E AA < T - 43 0 -76.7 170.5 178.8 -132.3 68.5 99.2 24 -1.4 0 0.0 0 0.0 0 0.0 13 30
28 T 298 LYS K E E AA - 40 0 -112.7 170.9 -179.9 -147.4 17.8 131.8 42 -1.6 40 -1.0 40 -0.5 0 0.0 10 26
29 T 299 VAL V E E AA - 39 0 -144.3 151.5 178.8 -155.5 4.8 171.0 0 0.0 0 0.0 0 0.0 0 0.0 8 22
30 T 300 ASN N E E AA - 38 0 -120.1 173.2 -178.1 -117.3 19.6 135.3 38 -2.4 38 -1.4 0 0.0 32 -0.5 9 19
31 T 301 ILE I E E AA - 37 0 -118.3 115.3 178.2 -146.9 18.8 159.5 0 0.0 0 0.0 0 0.0 0 0.0 9 15
32 T 302 ASP D E E >AA > T - 36 0 -71.5 160.2 -179.2 -91.8 43.7 112.2 36 -2.9 35 -3.5 30 -0.5 36 -0.5 8 12
33 T 303 ALA A T T 4 3 TS+ 0 0 -38.6 -47.8 179.3 63.4 127.5 34.2 0 0.0 0 0.0 0 0.0 0 0.0 5 10
34 T 304 ASN N T T 4 3 TS- 0 0 -59.0 -3.7 -179.8 -109.6 121.1 58.8 0 0.0 0 0.0 0 0.0 0 0.0 5 8
35 T 305 GLY G T T 4 < TS+ 0 0 81.3 18.2 179.9 137.3 75.1 46.5 32 -3.5 0 0.0 0 0.0 0 0.0 6 10
36 T 306 ASN N E E > T - 0 0 -62.7 140.0 -178.9 -122.3 41.4 111.5 26 -3.2 48 -2.1 0 0.0 47 -2.0 9 28
45 T 315 ASP D H H > 3 TS+ 0 0 -51.6 -49.8 -179.9 55.9 111.4 27.4 0 0.0 49 -3.6 0 0.0 0 0.0 6 23
46 T 316 ASP D H H > 3 TS+ 0 0 -62.4 -7.4 178.9 47.0 113.0 51.0 0 0.0 50 -0.8 0 0.0 0 0.0 6 19
47 T 317 ILE I H H > < TS+ 0 0 -97.4 -43.7 178.2 45.4 111.8 35.4 44 -2.0 51 -1.2 0 0.0 0 0.0 9 31
48 T 318 VAL V H H X TS+ 0 0 -62.5 -45.5 178.6 48.2 117.4 21.3 44 -2.1 52 -3.1 0 0.0 0 0.0 10 32
49 T 319 GLU E H H < TS+ 0 0 -55.2 -59.0 -179.1 50.9 109.9 13.1 45 -3.6 0 0.0 0 0.0 0 0.0 8 24
50 T 320 GLN Q H H X TS+ 0 0 -55.9 -22.0 178.5 41.7 116.3 49.0 46 -0.8 54 -0.9 0 0.0 0 0.0 8 28
51 T 321 ILE I H H X TS+ 0 0 -91.2 -50.6 179.9 56.4 108.2 27.5 47 -1.2 55 -1.1 0 0.0 0 0.0 11 33
52 T 322 ALA A H H < TS+ 0 0 -67.0 19.8 178.2 51.8 110.6 77.9 48 -3.1 0 0.0 0 0.0 0 0.0 9 34
53 T 323 GLN Q H H > TS+ 0 0 -114.6 -66.7 178.4 45.9 105.1 48.3 0 0.0 57 -1.6 0 0.0 0 0.0 8 28
54 T 324 GLN Q H H < TS+ 0 0 -54.2 -10.3 -179.9 59.4 116.5 52.2 50 -0.9 0 0.0 0 0.0 0 0.0 10 30
55 T 325 ALA A T h X > TS+ 0 0 -84.2 -72.5 -179.9 38.1 103.6 16.2 51 -1.1 59 -2.7 0 0.0 58 -2.0 13 31
56 T 326 LYS K T T 4 3 TS+ 0 0 -57.3 -11.2 178.6 58.0 117.6 48.4 0 0.0 0 0.0 0 0.0 0 0.0 11 32
57 T 327 GLU E T T X 3 TS+ 0 0 -86.8 -28.6 179.3 43.9 107.6 39.8 53 -1.6 61 -1.2 0 0.0 0 0.0 9 28
58 T 328 ALA A T T 4 < TS+ 0 0 -82.4 -31.2 179.0 51.9 112.6 37.8 55 -2.0 0 0.0 0 0.0 0 0.0 11 31
59 T 329 GLY G T h X TS+ 0 0 -79.4 -9.4 178.9 60.0 104.8 55.7 55 -2.7 63 -1.3 0 0.0 0 0.0 15 31
60 T 330 GLU E H H > TS+ 0 0 -82.5 -45.9 178.2 53.9 97.3 26.9 0 0.0 64 -2.1 0 0.0 0 0.0 11 27
61 T 331 VAL V H H < TS+ 0 0 -64.6 -2.9 179.0 65.5 105.7 55.9 57 -1.2 0 0.0 0 0.0 0 0.0 9 25
62 T 332 ALA A H H 4 > TS+ 0 0 -80.3 -69.7 -179.6 33.0 105.2 15.1 0 0.0 65 -1.5 0 0.0 0 0.0 14 25
63 T 333 ARG R H H < > TS+ 0 0 -54.6 -46.9 -179.7 63.6 112.1 24.7 59 -1.3 66 -3.2 0 0.0 0 0.0 12 21
64 T 334 GLN Q T h < 3 TS+ 0 0 -51.6 -25.5 179.2 46.2 106.0 40.9 60 -2.1 0 0.0 0 0.0 0 0.0 6 19
65 T 335 GLN Q T t < T 0 0 -99.5 7.9 -179.7 999.9 999.9 71.6 62 -1.5 0 0.0 0 0.0 0 0.0 5 18
66 T 336 ALA A t < T 0 0 -120.7 999.9 999.9 999.9 999.9 112.6 63 -3.2 0 0.0 0 0.0 0 0.0 7 16
1f02T.pdb
1F02 CELL ADHESION MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand SHHHHHHHHHHHHHHHHHHTSGGGEEEEEETTTEEEEEEEE HHHHHHHHHHTTTTTHHHHTT Kabs/Sand
chirality +++++++++++++++++++++-+++------+-+-----+---++++++++++++++++++++ chirality
bends SSSSSSSSSSSSSSSSSSSSSSSS SSS S SSSSSSSSSSSSSSSSSSSS bends
turns TTTTTTTTTTTTTTTTTTTTTTTTT TTTTT TTTTTTTTTTTTTTTTTTTTTTT turns
5-turns >5555< 5-turns
3-turns >33< >33X33X>3<< >33< >33< >33< >>3<< 3-turns
bridge-2 bridge-2
bridge-1 AAAAAA AAAAA**A bridge-1
sheets AAAAAA AAAAAAAA sheets
4-turns >>4>XX>XXXXXXXXX<<<< >444< >>>>X<4<< 4-turns
summary hHHHHHHHHHHHHHHHHHHhgGGeEEEEEETTTEEEEEEEEhHHHHHHHHHHhTTThHHHHhtt summary
sequence MDQAANAAESATKDQLTQEAFKNPENQKVNIDANGNAIPSGELKDDIVEQIAQQAKEAGEVARQQA sequence
10 20 30 40 50 60