Secondary structure calculation program - copyright by David Keith Smith, 1989
1dynA.pdb
1DYN SIGNAL TRANSDUCTION PROTEIN DYNAMIN (PLECKSTRIN HOMOLOGY DOMAIN) (DYNPH) HUMAN (HOMO SAPIENS) RECOMBINANT FORM EXPRESSED IN
Sequence length - 113
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 10 ILE I 0 0 999.9 -55.8 179.9 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 5 18
2 A 11 LEU L e - 0 0 -68.7 135.3 178.3 -121.7 999.9 117.3 0 0.0 30 -0.7 0 0.0 0 0.0 5 19
3 A 12 VAL V E E AA - 29 0 -82.0 125.5 180.0 -168.9 22.9 135.0 0 0.0 0 0.0 0 0.0 0 0.0 9 28
4 A 13 ILE I E E A* - 0 0 -83.1 -36.4 -178.3 -20.5 63.5 32.0 28 -3.3 0 0.0 0 0.0 0 0.0 11 30
5 A 14 ARG R E E AA - 28 0 -172.2 151.4 177.1 -157.2 45.1 164.7 28 -1.4 28 -3.0 0 0.0 0 0.0 9 38
6 A 15 LYS K E E AA + 27 0 -133.8 133.0 179.2 128.2 38.0 172.0 0 0.0 0 0.0 0 0.0 0 0.0 9 39
7 A 16 GLY G E E AA - 26 0 -176.7 160.8 179.3 -88.6 55.3 160.5 26 -1.8 26 -2.7 0 0.0 0 0.0 7 39
8 A 17 TRP W E E AA + 25 0 -80.3 145.9 175.4 172.8 40.6 124.2 0 0.0 0 0.0 0 0.0 0 0.0 8 41
9 A 18 LEU L E E AA - 24 0 -145.0 156.0 177.2 -119.2 31.1 162.3 24 -2.4 24 -2.8 0 0.0 0 0.0 11 50
10 A 19 THR T E E AAB - 23 89 -99.4 129.6 176.1 -141.3 16.6 151.3 89 -1.9 89 -2.3 0 0.0 12 -0.8 11 50
11 A 20 ILE I E E AAB - 22 88 -89.1 115.4 -177.5 -171.0 19.8 151.7 22 -3.1 22 -0.9 0 0.0 0 0.0 13 55
12 A 21 ASN N S e S+ 0 0 -79.8 -26.9 -177.8 53.2 72.0 43.1 87 -2.7 0 0.0 10 -0.8 0 0.0 12 45
13 A 22 ASN N + 0 0 -109.7 42.3 177.4 135.1 67.1 98.1 87 -0.8 0 0.0 0 0.0 0 0.0 9 43
14 A 23 ILE I - 0 0 -85.0 137.8 -178.6 -98.2 63.3 134.2 0 0.0 0 0.0 0 0.0 0 0.0 10 36
15 A 24 GLY G g >>T - 0 0 -58.8 150.6 179.4 -112.2 24.1 98.6 0 0.0 18 -1.1 0 0.0 20 -0.9 8 22
16 A 25 ILE I G G >5TS+ 0 0 -46.2 -39.0 -178.9 68.4 115.8 31.8 0 0.0 19 -1.1 0 0.0 18 -0.8 6 12
17 A 26 MET M G G 35TS+ 0 0 -76.0 30.8 177.9 47.9 99.7 91.4 0 0.0 0 0.0 0 0.0 0 0.0 5 12
18 A 27 LYS K G G <5TS- 0 0 -160.6 38.8 179.4 -84.1 127.7 93.8 15 -1.1 0 0.0 16 -0.8 0 0.0 6 17
19 A 28 GLY G T g <5T - 0 0 79.8 -29.0 -179.0 -111.3 66.9 89.5 16 -1.1 0 0.0 0 0.0 0 0.0 8 15
20 A 29 GLY G S t TS- 0 0 -159.9 178.3 -179.3 -80.4 80.8 162.3 0 0.0 41 -1.6 0 0.0 0 0.0 9 24
39 A 48 ASP D T T 3 TS+ 0 0 -69.5 -1.4 177.5 72.6 113.4 67.6 0 0.0 0 0.0 0 0.0 0 0.0 6 23
40 A 49 GLU E T T 3 TS- 0 0 -84.7 -17.3 178.6 -143.5 93.6 52.1 0 0.0 0 0.0 0 0.0 0 0.0 4 18
41 A 50 GLU E t < T + 0 0 58.3 41.2 -179.9 133.2 56.4 39.3 38 -1.6 0 0.0 0 0.0 0 0.0 9 25
42 A 51 LYS K S S S+ 0 0 -89.0 -24.2 -178.8 39.3 70.8 44.7 0 0.0 0 0.0 0 0.0 0 0.0 7 17
43 A 52 GLU E e - 0 0 -135.8 108.5 -179.8 -165.4 67.4 156.4 0 0.0 37 -2.0 0 0.0 45 -0.7 7 18
44 A 53 LYS K E E AD - 36 0 -94.4 115.6 -178.6 -168.3 3.3 144.8 0 0.0 0 0.0 0 0.0 0 0.0 10 26
45 A 54 LYS K E E A* - 0 0 -71.6 -36.5 -180.0 -19.6 68.6 28.8 35 -2.1 0 0.0 43 -0.7 0 0.0 8 34
46 A 55 TYR Y E E AD - 35 0 -167.7 161.0 177.8 -145.5 44.0 172.8 35 -1.3 35 -2.1 0 0.0 0 0.0 7 35
47 A 56 MET M E E AD - 34 0 -136.8 110.1 -179.4 -167.5 22.9 162.8 0 0.0 0 0.0 0 0.0 0 0.0 9 34
48 A 57 LEU L E E AD - 33 0 -104.0 129.2 179.4 -121.0 22.2 151.8 33 -3.4 33 -2.8 0 0.0 0 0.0 8 46
49 A 58 SER S E E AD - 32 0 -67.1 143.1 179.3 -134.4 12.2 113.9 0 0.0 0 0.0 0 0.0 0 0.0 8 38
50 A 59 VAL V e > T + 0 0 -74.1 -8.0 -179.8 125.1 68.7 55.5 31 -3.2 53 -1.3 0 0.0 0 0.0 12 45
51 A 60 ASP D T T 3 TS- 0 0 -61.7 129.2 178.1 -10.2 82.4 105.2 0 0.0 0 0.0 0 0.0 0 0.0 6 33
52 A 61 ASN N T e 3 TS+ 0 0 63.1 5.3 178.9 144.3 95.5 62.7 0 0.0 74 -3.3 0 0.0 0 0.0 9 35
53 A 62 LEU L E E AE < T + 73 0 -75.8 143.6 178.7 176.0 22.6 117.9 50 -1.3 109 -0.6 0 0.0 0 0.0 12 48
54 A 63 LYS K E E AEf - 72 109 -135.1 174.4 -177.2 -121.1 22.6 143.8 72 -1.9 72 -1.6 0 0.0 0 0.0 13 46
55 A 64 LEU L E E AEf - 71 110 -133.5 135.9 -179.0 -179.7 23.8 167.2 109 -2.8 111 -0.6 0 0.0 0 0.0 14 48
56 A 65 ARG R E E AE - 70 0 -132.0 152.5 178.5 -115.2 31.5 157.9 70 -2.2 70 -2.3 0 0.0 58 -0.5 12 39
57 A 66 ASP D E E AE - 69 0 -85.4 125.4 -179.3 -131.2 34.6 139.1 0 0.0 59 -0.6 0 0.0 0 0.0 9 41
58 A 67 VAL V e - 0 0 -85.8 116.8 179.9 -102.1 30.8 137.9 68 -0.7 60 -2.0 56 -0.5 0 0.0 10 37
59 A 68 GLU E - 0 0 -36.4 69.1 -179.7 -76.2 68.7 93.4 57 -0.6 61 -3.5 0 0.0 0 0.0 5 28
60 A 69 LYS K S S S- 0 0 63.2 -57.4 178.5 -155.7 72.3 105.9 58 -2.0 0 0.0 0 0.0 0 0.0 9 25
61 A 70 GLY G + 0 0 98.5 -134.6 -179.7 17.1 48.2 139.5 59 -3.5 0 0.0 0 0.0 0 0.0 7 30
62 A 71 PHE F S S S- 0 0 -68.4 172.3 177.7 -92.4 90.7 98.2 0 0.0 64 -1.8 0 0.0 0 0.0 5 25
63 A 72 MET M S S S+ 0 0 -87.1 69.4 -179.4 101.1 93.3 123.8 0 0.0 0 0.0 0 0.0 0 0.0 5 16
64 A 73 SER S S S S- 0 0 -134.1 -164.0 -179.9 -96.8 87.6 125.3 62 -1.8 0 0.0 0 0.0 0 0.0 5 22
65 A 74 SER S S S S+ 0 0 -101.8 -0.7 -178.8 118.8 80.3 68.7 0 0.0 0 0.0 0 0.0 0 0.0 6 23
66 A 75 LYS K - 0 0 -71.7 143.3 177.3 -145.2 56.9 111.6 0 0.0 68 -0.5 0 0.0 0 0.0 10 33
67 A 76 HIS H E E A G - 0 90 -109.0 120.9 -176.5 -157.0 27.4 165.5 90 -2.4 90 -2.1 0 0.0 0 0.0 11 38
68 A 77 ILE I E E A G + 0 89 -109.4 152.2 176.6 163.1 25.2 138.5 66 -0.5 58 -0.7 0 0.0 0 0.0 15 45
69 A 78 PHE F E E AEG - 57 88 -150.0 165.0 -177.4 -149.2 20.7 155.6 88 -1.9 88 -3.0 0 0.0 0 0.0 12 53
70 A 79 ALA A E E AEG - 56 87 -148.6 153.8 178.7 -133.6 10.6 176.6 56 -2.3 56 -2.2 0 0.0 0 0.0 12 57
71 A 80 LEU L E E AEG + 55 86 -104.2 139.1 177.9 175.8 28.0 148.0 86 -2.0 86 -2.2 0 0.0 0 0.0 12 63
72 A 81 PHE F E E AE - 54 0 -146.4 142.3 179.9 -117.8 33.5 174.1 54 -1.6 54 -1.9 0 0.0 74 -0.6 14 45
73 A 82 ASN N E E AE > T - 53 0 -79.6 119.0 -179.5 -150.0 18.9 133.4 0 0.0 76 -1.3 0 0.0 0 0.0 14 37
74 A 83 THR T T e 3 TS+ 0 0 -60.4 -24.5 -176.9 47.4 94.1 39.9 52 -3.3 0 0.0 72 -0.6 0 0.0 7 30
75 A 84 GLU E T T 3 TS+ 0 0 -104.7 10.9 179.5 36.5 112.4 76.4 0 0.0 0 0.0 0 0.0 0 0.0 5 22
76 A 85 GLN Q S t < TS- 0 0 -158.8 168.7 -179.0 -114.6 70.0 170.3 73 -1.3 0 0.0 0 0.0 0 0.0 6 24
77 A 86 ARG R S S S+ 0 0 -67.3 -64.5 179.2 41.6 97.3 10.9 0 0.0 0 0.0 0 0.0 0 0.0 6 21
78 A 87 ASN N - 0 0 -88.1 147.9 179.9 -159.5 59.7 128.0 0 0.0 0 0.0 0 0.0 0 0.0 11 26
79 A 88 VAL V S S S- 0 0 -93.7 -33.2 177.6 -10.6 83.3 40.9 0 0.0 0 0.0 0 0.0 0 0.0 13 37
80 A 89 TYR Y S t > TS- 0 0 -163.6 141.3 -178.0 -21.2 124.0 157.2 0 0.0 83 -0.9 0 0.0 0 0.0 9 36
81 A 90 LYS K T T 3 TS- 0 0 53.3 -132.6 178.8 -32.0 125.6 102.8 0 0.0 83 -0.5 0 0.0 0 0.0 5 22
82 A 91 ASP D T T 3 TS+ 0 0 -113.3 66.4 -176.1 111.9 109.9 127.8 0 0.0 0 0.0 0 0.0 0 0.0 6 20
83 A 92 TYR Y t < T - 0 0 -118.8 -16.5 179.2 -158.0 53.7 48.4 80 -0.9 85 -3.4 81 -0.5 0 0.0 8 30
84 A 93 ARG R S S S+ 0 0 68.6 -55.3 178.0 8.9 82.7 98.8 0 0.0 0 0.0 0 0.0 0 0.0 10 33
85 A 94 GLN Q S S S- 0 0 -153.6 152.4 179.8 -124.0 73.0 167.5 83 -3.4 87 -0.7 0 0.0 0 0.0 11 46
86 A 95 LEU L E E A G - 0 71 -102.2 111.0 -179.4 -147.7 28.9 155.5 71 -2.2 71 -2.0 0 0.0 88 -0.6 13 58
87 A 96 GLU E E E A G - 0 70 -86.0 124.1 -178.4 -171.7 15.7 137.9 85 -0.7 12 -2.7 0 0.0 13 -0.8 12 53
88 A 97 LEU L E E ABG - 11 69 -117.6 139.8 -178.6 -164.8 2.5 151.6 69 -3.0 69 -1.9 86 -0.6 0 0.0 12 64
89 A 98 ALA A E E ABG - 10 68 -130.2 150.4 178.3 -173.2 10.9 163.2 10 -2.3 10 -1.9 0 0.0 0 0.0 13 48
90 A 99 CYS C E E A G - 0 67 -137.1 142.1 -179.8 -130.3 30.6 173.4 67 -2.1 67 -2.4 0 0.0 0 0.0 12 40
91 A 100 GLU E S S S+ 0 0 -66.9 -15.4 179.7 44.2 95.1 45.6 0 0.0 0 0.0 0 0.0 0 0.0 8 32
92 A 101 THR T S h > TS- 0 0 -130.4 154.1 179.7 -133.6 75.0 157.3 0 0.0 96 -1.1 0 0.0 0 0.0 9 23
93 A 102 GLN Q H H > TS+ 0 0 -71.6 -39.0 -179.2 54.3 107.3 30.0 0 0.0 97 -2.6 0 0.0 0 0.0 8 27
94 A 103 GLU E H H > TS+ 0 0 -66.6 -27.4 178.0 57.5 103.8 36.4 0 0.0 98 -1.9 0 0.0 0 0.0 6 21
95 A 104 GLU E H H > TS+ 0 0 -66.2 -42.6 178.8 45.1 108.6 25.5 0 0.0 99 -1.8 0 0.0 0 0.0 9 30
96 A 105 VAL V H H X TS+ 0 0 -65.6 -43.3 -179.9 53.7 112.7 22.1 92 -1.1 100 -2.1 0 0.0 0 0.0 13 42
97 A 106 ASP D H H X TS+ 0 0 -63.7 -32.7 176.9 49.6 106.5 38.2 93 -2.6 101 -1.0 0 0.0 0 0.0 8 32
98 A 107 SER S H H X TS+ 0 0 -72.6 -39.6 178.3 49.0 112.2 25.2 94 -1.9 102 -1.1 0 0.0 0 0.0 8 34
99 A 108 TRP W H H X TS+ 0 0 -67.5 -32.8 177.7 57.9 105.0 34.0 95 -1.8 103 -2.2 0 0.0 0 0.0 8 48
100 A 109 LYS K H H X TS+ 0 0 -64.3 -34.6 179.9 51.1 105.4 30.0 96 -2.1 104 -1.6 0 0.0 0 0.0 8 48
101 A 110 ALA A H H X TS+ 0 0 -72.3 -28.8 178.9 50.6 109.5 37.0 97 -1.0 105 -1.0 0 0.0 0 0.0 8 32
102 A 111 SER S H H X TS+ 0 0 -75.5 -41.1 178.8 51.6 107.7 27.8 98 -1.1 106 -0.7 0 0.0 0 0.0 10 40
103 A 112 PHE F H H < >>TS+ 0 0 -62.4 -39.6 179.1 57.8 104.3 27.7 99 -2.2 108 -2.9 0 0.0 106 -1.1 11 49
104 A 113 LEU L H H < >5TS+ 0 0 -54.1 -41.7 179.9 55.8 102.5 27.0 100 -1.6 107 -1.2 0 0.0 0 0.0 9 35
105 A 114 ARG R H H < 35TS+ 0 0 -63.1 -28.9 176.7 45.9 108.3 44.9 101 -1.0 0 0.0 0 0.0 0 0.0 9 31
106 A 115 ALA A T h < <5TS- 0 0 -92.3 -3.1 178.5 -103.8 128.5 66.8 103 -1.1 0 0.0 102 -0.7 0 0.0 12 36
107 A 116 GLY G T T <5TS+ 0 0 94.8 7.7 179.2 139.4 75.8 57.1 104 -1.2 109 -0.9 0 0.0 0 0.0 8 35
108 A 117 VAL V t 5555< 5-turns
3-turns >>3<< >33< >33< >33< >33< 3-turns
bridge-2 BB CCCC DDDDD ff GGGGG GGGGG bridge-2
bridge-1 A*AAAAAAA AAAAAAAA CCCC D*DDDD EEEEE EEEEE BB bridge-1
sheets AAAAAAAAA AAAAAAAA AAAAA AAAAAA AAAAA AAAAAAA AAAAA sheets
4-turns >>>>XXXXX 4-turns
summary eEEEEEEEEEe gGGGgtSEEEEEEEEeeEEEEEetTTtSeEEEEEEeTeEEEEEe S SSSS EEEEEEEeTtS StTTtSSEEEEEShHHHHHHHH summary
sequence ILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWK sequence
10 20 30 40 50 60 70 80 90 100
author author
Kabs/Sand HHHHHTT EE Kabs/Sand
chirality +++++-+--++ chirality
bends SSSSSSS bends
turns TTTTTTTT turns
5-turns >5555< 5-turns
3-turns >>3<< 3-turns
bridge-2 bridge-2
bridge-1 ff bridge-1
sheets AA sheets
4-turns XX<<<< 4-turns
summary HHHHHhTtEEe summary
sequence ASFLRAGVYPERV sequence
110