Secondary structure calculation program - copyright by David Keith Smith, 1989
1cokA.pdb
1COK GENE REGULATION MOL_ID: 1; MOL_ID: 1;
Sequence length - 68
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 1 TYR Y 0 0 999.9 22.8 -180.0 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 3 10
2 A 2 HIS H - 0 0 50.4 94.9 -179.9 -8.0 999.9 20.7 0 0.0 0 0.0 0 0.0 0 0.0 3 8
3 A 3 ALA A - 0 0 67.3 148.4 180.0 -136.1 66.4 65.1 0 0.0 0 0.0 0 0.0 0 0.0 4 12
4 A 4 ASP D + 0 0 -140.4 75.7 -179.8 164.1 30.2 126.6 0 0.0 0 0.0 0 0.0 0 0.0 7 18
5 A 5 PRO P t > T + 0 0 -59.8 -37.4 -179.7 88.6 60.5 30.9 0 0.0 7 -2.9 0 0.0 9 -1.1 6 18
6 A 6 SER S T T 4 TS+ 0 0 -64.9 73.7 179.7 36.9 93.5 110.4 0 0.0 0 0.0 0 0.0 0 0.0 7 26
7 A 7 LEU L T h > TS+ 0 0 177.3 -50.4 -179.7 56.6 105.9 89.3 5 -2.9 11 -3.2 0 0.0 0 0.0 10 40
8 A 8 VAL V H H > >TS+ 0 0 -67.9 -50.9 -179.8 49.2 107.5 18.4 0 0.0 12 -2.2 0 0.0 13 -0.5 9 34
9 A 9 SER S H H X 5TS+ 0 0 -60.4 -25.0 -179.5 42.4 119.1 40.4 5 -1.1 13 -0.8 0 0.0 0 0.0 8 28
10 A 10 PHE F H H > 5TS+ 0 0 -87.3 -50.9 179.8 53.5 109.4 24.4 0 0.0 14 -2.5 0 0.0 0 0.0 8 38
11 A 11 LEU L H H < >TS+ 0 0 -48.9 -53.0 179.4 29.2 123.9 21.4 7 -3.2 16 -0.7 0 0.0 0 0.0 12 48
12 A 12 THR T H H X >5TS+ 0 0 -74.7 -46.9 179.8 61.2 114.8 22.5 8 -2.2 15 -3.5 0 0.0 16 -1.0 12 34
13 A 13 GLY G H H < 3 X TS+ 0 0 -111.3 -28.1 179.3 76.6 78.1 49.1 16 -0.7 23 -2.1 0 0.0 22 -0.9 9 37
20 A 20 ILE I H H X 3 TS+ 0 0 -52.2 -34.8 179.6 62.8 89.2 33.6 16 -1.1 24 -4.4 0 0.0 0 0.0 11 42
21 A 21 GLU E H H > 3 TS+ 0 0 -58.0 -44.1 179.4 41.9 106.9 24.4 0 0.0 25 -1.1 0 0.0 0 0.0 7 31
22 A 22 TYR Y H H 4 < TS+ 0 0 -72.0 -33.6 179.4 46.7 118.6 33.0 19 -0.9 0 0.0 0 0.0 0 0.0 9 31
23 A 23 PHE F H H X > TS+ 0 0 -73.8 -45.2 179.4 56.2 106.5 23.1 19 -2.1 26 -2.3 0 0.0 27 -1.7 11 45
24 A 24 THR T H H < 3 TS+ 0 0 -55.7 -32.1 180.0 77.8 89.1 34.5 20 -4.4 0 0.0 0 0.0 0 0.0 9 31
25 A 25 SER S T h < 3 TS+ 0 0 -49.5 -25.9 179.9 30.5 107.8 40.0 21 -1.1 0 0.0 0 0.0 0 0.0 7 21
26 A 26 GLN Q T T 4 < TS- 0 0 -99.9 -48.1 -179.9 -75.2 135.0 33.4 23 -2.3 0 0.0 0 0.0 0 0.0 7 24
27 A 27 GLY G S t < > TS+ 0 0 149.4 47.5 -179.7 143.6 72.6 64.9 23 -1.7 30 -0.5 0 0.0 0 0.0 8 27
28 A 28 LEU L T T 3 T + 0 0 -99.2 39.7 178.6 92.1 52.2 99.6 0 0.0 0 0.0 0 0.0 0 0.0 11 44
29 A 29 GLN Q T T 3 TS+ 0 0 -99.6 -30.2 178.0 57.0 79.6 43.0 0 0.0 31 -0.7 0 0.0 0 0.0 8 35
30 A 30 SER S S g X TS- 0 0 -106.5 110.5 -178.7 -148.4 74.5 154.5 27 -0.5 33 -4.2 0 0.0 0 0.0 9 30
31 A 31 ILE I G G > TS+ 0 0 -46.4 -27.6 178.5 74.3 96.8 39.3 29 -0.7 34 -1.6 0 0.0 0 0.0 9 36
32 A 32 TYR Y G G 3 TS+ 0 0 -58.2 -21.8 179.6 56.1 91.7 41.6 0 0.0 0 0.0 0 0.0 0 0.0 5 29
33 A 33 HIS H G G < TS+ 0 0 -82.9 -21.5 -179.9 42.4 110.6 46.2 30 -4.2 0 0.0 0 0.0 0 0.0 10 32
34 A 34 LEU L S g < TS+ 0 0 -110.3 19.3 -179.6 105.3 81.6 83.3 31 -1.6 0 0.0 0 0.0 0 0.0 10 46
35 A 35 GLN Q S S S+ 0 0 -68.0 -28.6 -177.8 19.8 99.5 39.0 0 0.0 0 0.0 0 0.0 0 0.0 9 32
36 A 36 ASN N S S S+ 0 0 -114.8 -20.4 -179.3 122.7 95.9 54.9 0 0.0 0 0.0 0 0.0 0 0.0 6 27
37 A 37 LEU L - 0 0 -44.9 148.1 179.8 -177.8 38.8 90.4 0 0.0 0 0.0 0 0.0 0 0.0 11 37
38 A 38 THR T h > T - 0 0 -140.4 178.6 176.4 -89.8 46.8 147.6 0 0.0 42 -2.5 0 0.0 0 0.0 10 34
39 A 39 ILE I H H > TS+ 0 0 -59.7 -33.3 178.8 61.9 124.9 30.4 0 0.0 43 -2.3 0 0.0 0 0.0 11 31
40 A 40 GLU E H H 4 TS+ 0 0 -57.2 -50.9 179.4 33.0 112.6 20.4 0 0.0 0 0.0 0 0.0 0 0.0 7 25
41 A 41 ASP D H H > > TS+ 0 0 -78.0 -24.3 179.8 68.7 110.6 42.5 0 0.0 45 -1.3 0 0.0 44 -0.8 8 31
42 A 42 LEU L H H < 3>TS+ 0 0 -59.7 -48.8 178.8 46.8 99.7 19.8 38 -2.5 47 -0.6 0 0.0 0 0.0 13 40
43 A 43 GLY G T h < 35TS+ 0 0 -70.6 -6.9 179.3 68.3 103.1 55.9 39 -2.3 0 0.0 0 0.0 0 0.0 10 27
44 A 44 ALA A T T 4 <5TS+ 0 0 -77.4 -43.6 178.6 64.8 85.2 24.8 41 -0.8 0 0.0 0 0.0 0 0.0 7 28
45 A 45 LEU L T T < 5TS- 0 0 -47.3 -29.1 -179.2 -128.9 106.9 38.2 41 -1.3 0 0.0 0 0.0 0 0.0 8 30
46 A 46 LYS K T T 5T + 0 0 82.4 21.4 178.3 154.7 53.3 48.5 0 0.0 0 0.0 0 0.0 0 0.0 6 26
47 A 47 ILE I t T - 0 0 -39.7 136.8 -178.9 -117.7 39.9 90.9 0 0.0 50 -2.2 0 0.0 51 -0.6 6 27
49 A 49 GLU E T T 3 TS+ 0 0 -78.7 55.3 179.1 119.0 78.9 107.3 0 0.0 0 0.0 0 0.0 0 0.0 7 27
50 A 50 GLN Q T T 3 TS- 0 0 -85.5 -43.2 179.9 -3.8 96.7 28.9 48 -2.2 0 0.0 0 0.0 0 0.0 4 29
51 A 51 TYR Y S h > < TS+ 0 0 -140.4 30.3 179.8 129.5 89.5 91.4 48 -0.6 55 -3.1 0 0.0 0 0.0 9 35
52 A 52 ARG R H H > TS+ 0 0 -50.7 -59.3 179.9 38.7 83.3 16.9 0 0.0 56 -2.2 0 0.0 0 0.0 12 37
53 A 53 MET M H H > TS+ 0 0 -59.4 -44.5 179.5 57.5 113.2 24.4 0 0.0 57 -3.2 0 0.0 0 0.0 8 31
54 A 54 THR T H H > TS+ 0 0 -51.7 -50.2 179.7 46.0 108.5 21.5 0 0.0 58 -1.9 0 0.0 0 0.0 9 35
55 A 55 ILE I H H X TS+ 0 0 -59.7 -46.2 179.2 48.7 114.4 22.3 51 -3.1 59 -2.4 0 0.0 0 0.0 14 51
56 A 56 TRP W H H X > TS+ 0 0 -57.6 -61.7 180.0 46.8 111.3 11.5 52 -2.2 60 -2.9 0 0.0 59 -0.5 12 43
57 A 57 ARG R H H X 3 TS+ 0 0 -51.8 -31.2 178.5 51.0 114.6 34.8 53 -3.2 61 -0.8 0 0.0 0 0.0 9 33
58 A 58 GLY G H H X 3 TS+ 0 0 -74.7 -36.6 178.6 49.5 108.7 29.6 54 -1.9 62 -0.8 0 0.0 0 0.0 9 41
59 A 59 LEU L H H X X TS+ 0 0 -67.5 -42.1 178.6 54.8 106.9 25.2 55 -2.4 63 -1.1 56 -0.5 62 -1.0 13 44
60 A 60 GLN Q H H X 3 TS+ 0 0 -61.0 -27.7 178.9 69.3 96.1 37.2 56 -2.9 64 -2.6 0 0.0 0 0.0 9 30
61 A 61 ASP D H H X 3 TS+ 0 0 -57.6 -40.2 178.9 53.6 95.5 27.2 57 -0.8 65 -1.9 0 0.0 0 0.0 8 28
62 A 62 LEU L H H < < TS+ 0 0 -59.2 -52.1 179.4 44.7 110.5 17.5 59 -1.0 0 0.0 58 -0.8 0 0.0 8 30
63 A 63 LYS K H H < TS+ 0 0 -60.5 -37.6 179.5 52.9 114.8 29.6 59 -1.1 0 0.0 0 0.0 0 0.0 7 24
64 A 64 GLN Q H H < TS- 0 0 -61.0 -80.2 179.5 -153.9 94.0 7.5 60 -2.6 0 0.0 0 0.0 0 0.0 6 17
65 A 65 GLY G h < T - 0 0 110.9 140.1 179.9 -122.2 14.6 87.1 61 -1.9 67 -0.6 0 0.0 0 0.0 6 13
66 A 66 HIS H + 0 0 -120.4 102.7 179.9 135.4 49.2 154.5 0 0.0 0 0.0 0 0.0 0 0.0 4 10
67 A 67 ASP D 0 0 -151.4 120.5 -179.9 999.9 999.9 156.7 65 -0.6 0 0.0 0 0.0 0 0.0 3 7
68 A 68 TYR Y 0 0 52.2 999.9 999.9 999.9 999.9 52.4 0 0.0 0 0.0 0 0.0 0 0.0 2 4
1cokA.pdb
1COK GENE REGULATION MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand TTHHHHHHTT TTTHHHHHTTSTTSGGGSSS HHHHTTTT TTSHHHHHHHHHHHHH Kabs/Sand
chirality --++++++++++-+++++++++++-+++-++++++--++++++-+--+-+++++++++++++--+ chirality
bends SSSSSSSSSS SSSSSSSSSSS SSSSSSSS SSSSSSS SSSSSSSSSSSSSSSS bends
turns TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTT turns
5-turns >55>5<55< >5555< 5-turns
3-turns >33<>33X33<>33<>33X>3<< >33< >33< >33X33< 3-turns
bridge-2 bridge-2
bridge-1 bridge-1
sheets sheets
4-turns >4>>X>X>4X<<4< >>4><<4< >>>>XXXXXXX<<<< 4-turns
summary tThHHHHHHhTtTThHHHHHhTtTTgGGGgSS hHHHHhTTTttTThHHHHHHHHHHHHHh summary
sequence YHADPSLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQDLKQGHDY sequence
10 20 30 40 50 60