Secondary structure calculation program - copyright by David Keith Smith, 1989
1cf7A.pdb
1CF7 TRANSCRIPTION/DNA MOL_ID: 1; MOL_ID: 1;
Sequence length - 67
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 16 SER S t > > T 0 0 999.9 -30.3 -178.9 999.9 999.9 999.9 0 0.0 4 -3.3 0 0.0 5 -0.7 4 8
2 A 17 ARG R T T 4 3 T + 0 0 -53.2 1.8 179.0 66.1 999.9 63.2 0 0.0 0 0.0 0 0.0 0 0.0 5 10
3 A 18 HIS H T T 4 > TS+ 0 0 -95.5 -24.0 -180.0 62.6 88.2 45.3 0 0.0 6 -1.0 0 0.0 0 0.0 5 13
4 A 19 GLU E T T 4 < TS+ 0 0 -69.6 -24.7 -179.3 53.3 103.5 40.1 1 -3.3 0 0.0 0 0.0 0 0.0 6 16
5 A 20 LYS K T T < 3 TS+ 0 0 -104.8 45.1 -180.0 134.2 83.1 105.2 1 -0.7 0 0.0 0 0.0 0 0.0 8 24
6 A 21 SER S h > X T - 0 0 -101.3 140.2 179.5 -133.5 61.4 141.2 3 -1.0 10 -2.3 0 0.0 9 -0.9 8 23
7 A 22 LEU L H H > 3 TS+ 0 0 -49.3 -44.1 -178.6 61.2 108.6 24.2 0 0.0 11 -2.9 0 0.0 0 0.0 9 32
8 A 23 GLY G H H > 3 TS+ 0 0 -54.7 -41.2 179.2 46.5 103.2 32.5 0 0.0 12 -2.2 0 0.0 0 0.0 6 27
9 A 24 LEU L H H > < TS+ 0 0 -67.7 -50.6 178.8 50.9 111.9 11.5 6 -0.9 13 -1.9 0 0.0 0 0.0 9 27
10 A 25 LEU L H H X TS+ 0 0 -49.4 -38.8 -179.1 56.6 107.9 29.7 6 -2.3 14 -2.8 0 0.0 0 0.0 10 38
11 A 26 THR T H H X TS+ 0 0 -57.3 -57.0 -178.9 52.2 102.2 14.5 7 -2.9 15 -2.8 0 0.0 0 0.0 9 41
12 A 27 THR T H H X TS+ 0 0 -48.1 -42.9 180.0 46.6 112.6 31.3 8 -2.2 16 -2.2 0 0.0 0 0.0 8 29
13 A 28 LYS K H H X TS+ 0 0 -66.0 -49.8 -179.5 52.9 109.2 18.5 9 -1.9 17 -3.5 0 0.0 0 0.0 9 34
14 A 29 PHE F H H X TS+ 0 0 -52.4 -42.5 -178.9 50.4 110.8 26.5 10 -2.8 18 -3.1 0 0.0 0 0.0 10 51
15 A 30 VAL V H H X TS+ 0 0 -63.1 -51.5 179.5 43.8 112.0 19.0 11 -2.8 19 -3.1 0 0.0 0 0.0 8 40
16 A 31 SER S H H X TS+ 0 0 -59.1 -46.9 179.3 49.8 115.0 19.1 12 -2.2 20 -1.8 0 0.0 0 0.0 8 26
17 A 32 LEU L H H X TS+ 0 0 -53.6 -49.5 179.5 48.3 114.5 19.1 13 -3.5 21 -2.2 0 0.0 0 0.0 9 36
18 A 33 LEU L H H < TS+ 0 0 -53.9 -71.7 -178.7 45.0 111.2 10.5 14 -3.1 0 0.0 0 0.0 0 0.0 12 41
19 A 34 GLN Q H H < TS+ 0 0 -51.9 -21.0 178.9 54.1 113.1 46.6 15 -3.1 0 0.0 0 0.0 0 0.0 8 26
20 A 35 GLU E H H < TS+ 0 0 -77.6 -62.8 178.5 75.3 89.9 12.0 16 -1.8 0 0.0 0 0.0 0 0.0 6 21
21 A 36 ALA A S h < TS- 0 0 -51.1 106.7 -179.1 -151.7 83.1 107.1 17 -2.2 0 0.0 0 0.0 0 0.0 9 24
22 A 37 LYS K S t > TS+ 0 0 -71.0 -171.0 -178.0 62.8 72.6 86.2 0 0.0 24 -1.6 0 0.0 25 -0.9 7 19
23 A 38 ASP D T T 3 TS- 0 0 82.9 -48.6 -179.7 -101.3 113.0 106.0 0 0.0 0 0.0 0 0.0 0 0.0 4 18
24 A 39 GLY G T e 3 TS+ 0 0 111.6 -0.4 -178.7 125.2 87.9 72.5 22 -1.6 66 -2.8 0 0.0 0 0.0 9 26
25 A 40 VAL V E E AA < T - 65 0 -99.6 134.3 -179.8 -172.9 38.1 140.4 22 -0.9 0 0.0 0 0.0 0 0.0 11 31
26 A 41 LEU L E E AA - 64 0 -125.5 140.7 -179.9 -139.5 19.2 164.2 64 -2.4 64 -2.2 0 0.0 28 -0.7 11 42
27 A 42 ASP D E E >AA > T - 63 0 -100.3 112.2 -178.2 -148.1 10.3 152.3 0 0.0 30 -1.4 0 0.0 31 -1.3 9 37
28 A 43 LEU L H H > 3 TS+ 0 0 -53.2 -20.7 179.3 62.0 96.9 44.6 62 -2.0 32 -1.4 26 -0.7 0 0.0 10 47
29 A 44 LYS K H H > 3 TS+ 0 0 -74.0 -39.2 179.5 49.0 101.7 29.3 62 -0.6 33 -1.3 0 0.0 0 0.0 7 33
30 A 45 LEU L H H > X TS+ 0 0 -62.2 -61.2 -179.7 46.8 111.3 9.5 27 -1.4 34 -2.3 0 0.0 33 -0.8 8 34
31 A 46 ALA A H H X 3 TS+ 0 0 -47.0 -46.5 180.0 67.6 102.9 26.3 27 -1.3 35 -3.5 0 0.0 0 0.0 11 41
32 A 47 ALA A H H < 3>TS+ 0 0 -40.7 -55.5 179.5 29.4 112.7 26.6 28 -1.4 37 -1.2 0 0.0 0 0.0 12 36
33 A 48 ASP D H H < <5TS+ 0 0 -68.0 -64.9 -179.9 52.6 119.9 6.4 29 -1.3 0 0.0 30 -0.8 0 0.0 8 25
34 A 49 THR T H H < 5TS+ 0 0 -42.5 -29.3 -178.7 68.0 101.6 44.3 30 -2.3 36 -0.9 0 0.0 0 0.0 7 28
35 A 50 LEU L T h < >5TS- 0 0 -97.4 59.3 178.3 -81.5 129.7 115.4 31 -3.5 38 -1.2 0 0.0 0 0.0 10 36
36 A 51 ALA A T T 35T - 0 0 66.4 -11.1 -178.1 -115.5 50.9 71.2 34 -0.9 0 0.0 0 0.0 0 0.0 7 28
37 A 52 VAL V T T 3 T - 0 0 143.6 127.4 -177.6 -112.3 44.6 101.0 0 0.0 42 -1.5 0 0.0 0 0.0 8 24
40 A 55 LYS K T h > > TS+ 0 0 -37.9 -53.7 -179.7 74.0 105.4 34.4 0 0.0 43 -2.6 0 0.0 44 -0.9 8 28
41 A 56 ARG R H H > > TS+ 0 0 -30.2 -54.9 -179.7 58.9 90.4 37.6 0 0.0 44 -0.9 0 0.0 45 -0.8 6 26
42 A 57 ARG R H H > X TS+ 0 0 -50.7 -37.7 -179.5 64.0 93.8 36.6 39 -1.5 46 -1.7 0 0.0 45 -0.7 9 33
43 A 58 ILE I H H > < TS+ 0 0 -56.3 -42.6 -179.0 53.3 99.9 20.4 40 -2.6 47 -2.5 0 0.0 0 0.0 10 45
44 A 59 TYR Y H H X < TS+ 0 0 -63.9 -26.4 178.2 63.2 99.2 35.5 40 -0.9 48 -2.8 41 -0.9 0 0.0 8 37
45 A 60 ASP D H H X < TS+ 0 0 -61.4 -44.2 -179.0 41.7 109.3 19.7 41 -0.8 49 -1.2 42 -0.7 0 0.0 9 35
46 A 61 ILE I H H X > TS+ 0 0 -68.0 -56.4 -178.7 47.5 115.0 8.3 42 -1.7 50 -2.1 0 0.0 49 -0.6 10 47
47 A 62 THR T H H X 3 TS+ 0 0 -54.1 -41.4 -178.8 60.0 105.2 29.5 43 -2.5 51 -2.4 0 0.0 0 0.0 9 46
48 A 63 ASN N H H X 3 TS+ 0 0 -57.8 -39.9 -179.4 40.4 110.5 25.9 44 -2.8 52 -2.0 0 0.0 0 0.0 8 32
49 A 64 VAL V H H X < TS+ 0 0 -79.5 -34.3 176.2 51.7 113.4 25.1 45 -1.2 53 -1.5 46 -0.6 0 0.0 8 28
50 A 65 LEU L H H X >TS+ 0 0 -65.2 -30.1 179.4 47.6 113.7 30.2 46 -2.1 55 -2.1 0 0.0 54 -0.9 10 34
51 A 66 GLU E H H < 5TS+ 0 0 -75.3 -39.0 179.5 56.3 106.5 29.2 47 -2.4 0 0.0 0 0.0 0 0.0 10 28
52 A 67 GLY G H H < 5TS+ 0 0 -61.4 -31.5 -179.0 46.0 110.0 33.8 48 -2.0 0 0.0 0 0.0 0 0.0 7 18
53 A 68 ILE I H H < 5TS- 0 0 -82.2 -26.9 -178.7 -119.8 113.3 42.2 49 -1.5 0 0.0 0 0.0 0 0.0 7 16
54 A 69 GLY G T h < 5TS+ 0 0 94.7 17.0 178.6 121.2 78.7 46.7 50 -0.9 0 0.0 0 0.0 0 0.0 8 17
55 A 70 LEU L S e TS- 63 0 -173.9 148.5 -178.1 -58.7 91.2 153.6 63 -1.7 63 -2.0 0 0.0 0 0.0 6 18
61 A 76 LYS K T T 3 TS+ 0 0 -35.1 133.8 179.4 7.7 127.0 85.6 0 0.0 0 0.0 0 0.0 0 0.0 6 19
62 A 77 ASN N T e 3 TS+ 0 0 62.1 18.3 -179.5 91.2 123.4 46.9 0 0.0 28 -2.0 0 0.0 29 -0.6 7 28
63 A 78 SER S E E AAB< T - 27 60 -148.4 143.2 -179.7 -178.1 50.9 177.0 60 -2.0 59 -1.8 0 0.0 60 -1.7 11 34
64 A 79 ILE I E E AAB - 26 58 -142.7 150.7 -178.5 -133.5 18.2 171.3 26 -2.2 26 -2.4 0 0.0 0 0.0 14 41
65 A 80 GLN Q E E AAB - 25 57 -108.2 129.4 179.2 -117.6 25.4 151.8 57 -2.8 57 -1.1 0 0.0 0 0.0 11 37
66 A 81 TRP W E E A B 0 56 -66.9 130.3 179.5 999.9 999.9 115.0 24 -2.8 0 0.0 0 0.0 0 0.0 9 35
67 A 82 LYS K e 0 0 64.1 999.9 999.9 999.9 999.9 77.8 55 -3.4 0 0.0 0 0.0 0 0.0 6 26
1cf7A.pdb
1CF7 TRANSCRIPTION/DNA MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand TTTT HHHHHHHHHHHHHHSSTTEEEHHHHHHHTTT THHHHHHHHHHHHHTSEEEEETTEEEE Kabs/Sand
chirality ++++-++++++++++++++-+-+---+++++++--+--+++++++++++++-++--+--++--- chirality
bends SSS SSSSSSSSSSSSSSSSSS SSSSSSSS SSSSSSSSSSSSSSSS SSS bends
turns TTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT turns
5-turns >5555< >5555< 5-turns
3-turns >3><3X33< >33< >33X33< >33<>>>X<<<>33< >33< 3-turns
bridge-2 BBBB bridge-2
bridge-1 AAA BBB*B AAA bridge-1
sheets AAA AAAAA AAAA sheets
4-turns >444<>>>>XXXXXXXX<<<< >>>>X<<<< >>>>XXXXXXX<<<< 4-turns
summary tTTTThHHHHHHHHHHHHHHhtTeEEEHHHHHHHhTTtthHHHHHHHHHHHHHheEEEEETeEEEEe summary
sequence SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWK sequence
10 20 30 40 50 60