Secondary structure calculation program - copyright by David Keith Smith, 1989
1b35D.pdb
1B35 VIRUS/VIRAL PROTEIN MOL_ID: 1; MOL_ID: 1;
Sequence length - 57
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 D 1 ALA A h > T 0 0 999.9 -59.5 179.0 999.9 999.9 999.9 0 0.0 5 -2.9 0 0.0 0 0.0 7 18
2 D 2 ALA A H H > T + 0 0 -53.3 -44.5 -179.4 52.0 999.9 23.3 0 0.0 6 -2.2 0 0.0 0 0.0 7 20
3 D 3 SER S H H > TS+ 0 0 -58.7 -46.1 179.5 46.0 111.1 25.9 0 0.0 7 -2.2 0 0.0 0 0.0 8 24
4 D 4 GLU E H H > TS+ 0 0 -66.9 -41.5 179.0 52.9 110.0 27.7 0 0.0 8 -2.2 0 0.0 0 0.0 9 24
5 D 5 LEU L H H X TS+ 0 0 -60.6 -40.4 -179.6 50.0 110.5 25.1 1 -2.9 9 -1.1 0 0.0 0 0.0 8 20
6 D 6 LYS K H H X > TS+ 0 0 -63.6 -49.9 -179.9 46.3 110.9 19.9 2 -2.2 10 -1.9 0 0.0 9 -0.7 8 19
7 D 7 GLN Q H H X 3 TS+ 0 0 -62.2 -35.5 -179.9 60.4 106.6 31.5 3 -2.2 11 -2.1 0 0.0 0 0.0 12 19
8 D 8 LEU L H H < 3>TS+ 0 0 -62.8 -30.5 179.7 45.2 107.9 34.7 4 -2.2 13 -0.6 0 0.0 0 0.0 11 17
9 D 9 GLU E H H < <5TS+ 0 0 -78.8 -46.1 -179.0 49.2 111.8 23.0 5 -1.1 0 0.0 6 -0.7 0 0.0 8 16
10 D 10 THR T H H < 5TS+ 0 0 -61.3 -42.3 -179.5 25.9 126.9 29.3 6 -1.9 0 0.0 0 0.0 0 0.0 6 16
11 D 11 ASN N T h < 5TS- 0 0 -99.7 -4.6 -175.6 -136.7 96.3 60.4 7 -2.1 0 0.0 0 0.0 0 0.0 9 16
12 D 12 ASN N T T 5TS+ 0 0 39.9 54.8 179.2 67.4 82.6 21.0 0 0.0 0 0.0 0 0.0 0 0.0 7 15
13 D 13 SER S S t T - 0 0 -58.2 130.7 -177.5 -140.1 34.3 112.9 0 0.0 24 -0.8 0 0.0 0 0.0 6 10
22 D 22 SER S G G > TS+ 0 0 -67.0 -29.1 179.8 71.1 92.4 39.2 0 0.0 25 -1.6 0 0.0 0 0.0 5 10
23 D 23 GLU E G G 3 TS+ 0 0 -57.1 -33.4 -178.7 43.8 103.1 34.3 0 0.0 0 0.0 0 0.0 0 0.0 4 9
24 D 24 GLY G G G < TS+ 0 0 -103.0 26.0 -179.5 96.8 93.5 84.4 21 -0.8 0 0.0 0 0.0 0 0.0 6 9
25 D 25 LEU L g < T + 0 0 -120.5 127.5 179.2 170.7 42.0 162.9 22 -1.6 0 0.0 0 0.0 0 0.0 7 12
26 D 26 THR T + 0 0 -136.8 131.5 178.3 166.7 19.9 173.4 0 0.0 0 0.0 0 0.0 0 0.0 4 12
27 D 27 THR T t > T + 0 0 -127.9 28.8 -179.6 124.1 41.9 92.9 0 0.0 30 -0.5 0 0.0 0 0.0 5 12
28 D 28 LEU L T T 3 TS+ 0 0 -59.1 -36.6 -179.2 40.0 78.7 36.2 0 0.0 0 0.0 0 0.0 0 0.0 4 10
29 D 29 SER S T T 3 TS+ 0 0 -92.2 -10.1 -179.4 120.1 87.0 55.5 0 0.0 0 0.0 0 0.0 0 0.0 4 8
30 D 30 HIS H t < T - 0 0 -60.5 125.2 178.7 -170.3 42.1 110.5 27 -0.5 0 0.0 0 0.0 0 0.0 5 10
31 D 31 ILE I - 0 0 -122.3 110.1 -179.9 -141.9 13.8 160.7 0 0.0 0 0.0 0 0.0 0 0.0 4 10
32 D 32 PRO P - 0 0 -71.5 142.7 179.1 -157.3 13.6 114.5 0 0.0 0 0.0 0 0.0 0 0.0 4 12
33 D 33 VAL V - 0 0 -120.5 150.8 -178.7 -114.3 27.4 153.9 0 0.0 0 0.0 0 0.0 0 0.0 5 11
34 D 34 LEU L S S S+ 0 0 -52.4 -34.9 -180.0 72.4 99.2 37.3 0 0.0 36 -0.7 0 0.0 0 0.0 5 11
35 D 35 GLY G + 0 0 -90.2 115.7 -178.8 132.3 69.4 140.2 0 0.0 0 0.0 0 0.0 0 0.0 5 10
36 D 36 ASN N - 0 0 -139.9 -161.2 179.8 -70.4 69.4 128.2 34 -0.7 0 0.0 0 0.0 0 0.0 7 15
37 D 37 ILE I S S S+ 0 0 -72.9 -25.6 -179.8 37.6 130.0 43.3 0 0.0 0 0.0 0 0.0 0 0.0 5 18
38 D 38 PHE F S S S+ 0 0 -110.0 8.4 -179.4 90.1 92.1 72.4 0 0.0 0 0.0 0 0.0 0 0.0 8 22
39 D 39 SER S S S S+ 0 0 -78.5 -17.0 -178.9 70.1 75.7 47.7 0 0.0 0 0.0 0 0.0 0 0.0 7 16
40 D 40 THR T S S S- 0 0 -109.1 106.0 179.9 -138.7 78.9 149.8 0 0.0 0 0.0 0 0.0 0 0.0 7 16
41 D 41 PRO P t > T - 0 0 -63.2 137.1 -178.3 -126.7 15.7 109.4 0 0.0 44 -1.7 0 0.0 0 0.0 8 19
42 D 42 ALA A T T 3 TS+ 0 0 -58.3 -19.7 -179.4 73.1 99.4 51.3 0 0.0 0 0.0 0 0.0 0 0.0 8 23
43 D 43 TRP W T T 3 TS+ 0 0 -74.3 -10.0 -179.9 90.2 74.2 51.3 0 0.0 45 -1.6 0 0.0 0 0.0 5 23
44 D 44 ILE I t < T + 0 0 -87.4 77.1 179.3 102.1 67.7 125.3 41 -1.7 0 0.0 0 0.0 0 0.0 6 20
45 D 45 SER S - 0 0 -153.9 160.6 -179.3 -149.4 58.7 171.5 43 -1.6 0 0.0 0 0.0 0 0.0 7 16
46 D 46 ALA A + 0 0 -118.3 17.5 178.7 140.9 45.5 82.5 0 0.0 0 0.0 0 0.0 0 0.0 6 14
47 D 47 LYS K h > > T - 0 0 -61.6 140.7 -178.7 -110.0 66.0 111.9 0 0.0 51 -2.0 0 0.0 50 -0.8 6 13
48 D 48 ALA A H H > 3 TS+ 0 0 -37.3 -56.4 -179.5 50.2 116.9 31.2 0 0.0 52 -1.9 0 0.0 0 0.0 6 15
49 D 49 ALA A H H > 3 TS+ 0 0 -54.6 -43.0 -179.8 48.3 111.7 29.0 0 0.0 53 -1.7 0 0.0 0 0.0 6 15
50 D 50 ASP D H H > < TS+ 0 0 -67.4 -41.9 -179.8 51.1 109.2 27.5 47 -0.8 54 -2.3 0 0.0 0 0.0 10 17
51 D 51 LEU L H H X TS+ 0 0 -65.9 -36.5 178.9 53.7 107.2 31.6 47 -2.0 55 -1.8 0 0.0 0 0.0 10 15
52 D 52 ALA A H H < >TS+ 0 0 -62.9 -49.9 179.4 44.0 112.3 14.8 48 -1.9 57 -2.0 0 0.0 0 0.0 9 14
53 D 53 LYS K H H < >5TS+ 0 0 -60.3 -39.5 -179.6 60.2 108.1 26.9 49 -1.7 56 -2.0 0 0.0 0 0.0 8 15
54 D 54 LEU L H H < 35TS+ 0 0 -55.7 -42.8 180.0 50.5 103.1 27.2 50 -2.3 0 0.0 0 0.0 0 0.0 7 15
55 D 55 PHE F T h < 35TS- 0 0 -81.0 10.7 177.8 -98.6 127.6 71.5 51 -1.8 0 0.0 0 0.0 0 0.0 6 14
56 D 56 GLY G T T <5T 0 0 90.6 4.2 -179.8 999.9 999.9 60.6 53 -2.0 0 0.0 0 0.0 0 0.0 5 10
57 D 57 PHE F t 5555< >5555< 5-turns
3-turns >33< >>3<< >33< >33< >33< >33< 3-turns
bridge-2 bridge-2
bridge-1 bridge-1
sheets sheets
4-turns >>>>XXX<<<< >>>>X<<<< 4-turns
summary hHHHHHHHHHhTtS S gGGGg tTTt S SSSStTTt hHHHHHHHhTt summary
sequence AASELKQLETNNSPSTALGQISEGLTTLSHIPVLGNIFSTPAWISAKAADLAKLFGF sequence
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