Secondary structure calculation program - copyright by David Keith Smith, 1989
1ap8-.pdb
1AP8 RNA CAP MOL_ID: 1; MOL_ID: 1;
Sequence length - 213
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 1 MET M 0 0 999.9 -169.4 179.9 999.9 999.9 999.9 0 0.0 3 -0.7 0 0.0 0 0.0 2 4
2 2 SER S + 0 0 -108.5 108.7 -179.9 155.5 999.9 150.9 0 0.0 0 0.0 0 0.0 0 0.0 3 5
3 3 VAL V + 0 0 -134.4 136.4 179.9 171.5 10.6 172.8 1 -0.7 0 0.0 0 0.0 0 0.0 4 6
4 4 GLU E - 0 0 -145.3 133.7 180.0 -119.2 30.7 170.8 0 0.0 0 0.0 0 0.0 0 0.0 4 8
5 5 GLU E - 0 0 -57.7 -179.0 -179.9 -130.2 22.4 85.4 0 0.0 0 0.0 0 0.0 0 0.0 4 8
6 6 VAL V S S S+ 0 0 -137.4 67.2 179.9 98.0 71.0 118.0 0 0.0 0 0.0 0 0.0 0 0.0 4 8
7 7 SER S - 0 0 -116.9 -55.7 179.9 -173.0 49.8 43.3 0 0.0 0 0.0 0 0.0 0 0.0 4 8
8 8 LYS K - 0 0 64.0 130.8 179.9 -130.3 22.5 52.7 0 0.0 10 -0.6 0 0.0 0 0.0 4 8
9 9 LYS K + 0 0 -116.5 84.4 -179.9 164.5 35.2 136.4 0 0.0 11 -1.1 0 0.0 0 0.0 4 10
10 10 PHE F + 0 0 -100.7 84.4 -180.0 104.0 38.0 133.2 8 -0.6 0 0.0 0 0.0 0 0.0 4 10
11 11 GLU E + 0 0 -154.6 49.9 179.9 110.0 35.2 98.2 9 -1.1 0 0.0 0 0.0 0 0.0 4 13
12 12 GLU E + 0 0 -123.3 52.4 -180.0 157.9 30.6 108.9 0 0.0 14 -1.4 0 0.0 0 0.0 4 18
13 13 ASN N + 0 0 -79.0 94.4 180.0 136.9 16.3 126.3 0 0.0 0 0.0 0 0.0 0 0.0 5 13
14 14 VAL V + 0 0 -133.5 49.5 179.9 132.7 11.7 104.6 12 -1.4 0 0.0 0 0.0 0 0.0 8 14
15 15 SER S S S S- 0 0 -65.9 -51.6 -179.9 -2.7 97.3 14.1 0 0.0 0 0.0 0 0.0 0 0.0 5 11
16 16 VAL V S S S+ 0 0 -125.5 15.9 180.0 92.6 112.9 79.2 0 0.0 0 0.0 0 0.0 0 0.0 4 9
17 17 ASP D S S S- 0 0 -101.4 39.2 -180.0 -107.6 96.2 97.2 0 0.0 0 0.0 0 0.0 0 0.0 7 11
18 18 ASP D - 0 0 55.1 165.2 180.0 -62.9 51.7 75.1 0 0.0 20 -1.7 0 0.0 0 0.0 6 13
19 19 THR T + 0 0 -84.3 83.9 -180.0 175.1 55.4 125.1 0 0.0 0 0.0 0 0.0 0 0.0 6 16
20 20 THR T + 0 0 -63.6 -12.0 179.9 98.7 57.4 47.0 18 -1.7 22 -3.2 0 0.0 0 0.0 6 15
21 21 ALA A + 0 0 -72.6 59.5 179.9 130.5 43.2 104.2 0 0.0 0 0.0 0 0.0 0 0.0 6 18
22 22 THR T S S S+ 0 0 -76.2 -60.6 180.0 31.1 77.5 10.4 20 -3.2 0 0.0 0 0.0 0 0.0 6 14
23 23 PRO P S S S+ 0 0 -72.4 -13.2 -180.0 67.3 117.1 51.0 0 0.0 25 -0.7 0 0.0 0 0.0 4 12
24 24 LYS K + 0 0 -111.7 93.0 -180.0 146.4 67.7 142.4 0 0.0 0 0.0 0 0.0 0 0.0 5 16
25 25 THR T - 0 0 -124.2 157.9 -180.0 -140.3 48.1 151.6 23 -0.7 0 0.0 0 0.0 0 0.0 7 14
26 26 VAL V S S S+ 0 0 -90.3 -14.6 179.9 1.4 96.2 49.6 0 0.0 0 0.0 0 0.0 0 0.0 4 12
27 27 LEU L - 0 0 -172.5 89.9 180.0 -165.3 58.8 115.7 0 0.0 29 -2.4 0 0.0 0 0.0 4 10
28 28 SER S + 0 0 -79.0 66.7 -179.9 115.3 54.6 112.2 0 0.0 0 0.0 0 0.0 0 0.0 5 12
29 29 ASP D + 0 0 -138.6 135.4 179.9 152.5 23.5 174.2 27 -2.4 0 0.0 0 0.0 0 0.0 4 11
30 30 SER S + 0 0 -158.8 65.9 -180.0 164.7 4.0 107.8 0 0.0 0 0.0 0 0.0 0 0.0 4 13
31 31 ALA A + 0 0 -49.9 -76.2 180.0 128.1 31.4 14.1 0 0.0 0 0.0 0 0.0 0 0.0 4 16
32 32 HIS H + 0 0 49.7 -153.4 179.9 106.6 21.3 95.1 0 0.0 0 0.0 0 0.0 0 0.0 6 20
33 33 PHE F + 0 0 50.1 54.6 179.9 127.0 49.8 17.3 0 0.0 0 0.0 0 0.0 0 0.0 4 19
34 34 ASP D + 0 0 -104.1 -86.6 179.8 147.0 12.6 42.7 0 0.0 0 0.0 0 0.0 0 0.0 7 21
35 35 VAL V + 0 0 57.6 13.4 179.5 94.9 58.7 46.7 38 -0.9 0 0.0 0 0.0 0 0.0 8 28
36 36 LYS K S S S- 0 0 -111.3 -2.9 180.0 -49.1 116.7 63.8 0 0.0 0 0.0 0 0.0 0 0.0 5 25
37 37 HIS H S e S+ 0 0 167.4 -60.1 178.5 71.5 122.6 101.5 0 0.0 71 -1.9 0 0.0 0 0.0 8 32
38 38 PRO P E E AA + 70 0 -81.9 127.3 179.1 179.5 56.3 131.6 0 0.0 35 -0.9 0 0.0 0 0.0 10 33
39 39 LEU L E E A* - 0 0 -94.0 -102.0 -180.0 -93.3 43.2 46.0 69 -3.3 0 0.0 0 0.0 0 0.0 14 41
40 40 ASN N E E A* S+ 0 0 -169.2 24.8 179.9 75.5 87.1 78.4 0 0.0 0 0.0 0 0.0 0 0.0 10 39
41 41 THR T E E A* - 0 0 -141.2 164.6 178.9 -117.3 69.5 161.3 0 0.0 0 0.0 0 0.0 0 0.0 10 48
42 42 LYS K E E A* + 0 0 -105.1 130.4 180.0 165.5 35.9 150.5 0 0.0 0 0.0 0 0.0 0 0.0 10 43
43 43 TRP W E E AA - 68 0 -147.9 123.3 179.8 -146.3 23.4 159.7 68 -1.5 68 -1.2 0 0.0 0 0.0 12 53
44 44 THR T E E A*B - 0 96 -82.9 163.6 -177.7 -130.8 17.0 113.0 96 -2.2 96 -0.8 0 0.0 46 -0.6 12 50
45 45 LEU L E E AAB + 65 95 -121.7 95.4 179.6 168.0 30.8 144.9 65 -1.5 65 -2.1 0 0.0 47 -0.7 13 52
46 46 TRP W E E AAB + 64 94 -107.9 112.4 179.6 174.3 9.2 152.9 94 -3.3 94 -1.7 44 -0.6 0 0.0 12 47
47 47 TYR Y E E AAB - 63 93 -118.7 146.7 179.9 -145.1 20.5 154.9 63 -1.9 63 -3.3 45 -0.7 0 0.0 12 54
48 48 THR T E E A B + 0 92 -111.3 129.5 -179.5 165.6 22.9 156.0 92 -3.1 92 -1.3 0 0.0 0 0.0 11 45
49 49 LYS K + 0 0 -104.0 -65.7 -179.7 35.4 62.8 32.6 0 0.0 0 0.0 0 0.0 0 0.0 9 41
50 50 PRO P - 0 0 -73.6 -160.5 -179.7 -152.4 61.0 78.8 0 0.0 0 0.0 0 0.0 0 0.0 7 30
51 51 ALA A g > T + 0 0 -165.7 24.2 -179.2 131.0 47.8 82.4 0 0.0 54 -1.0 0 0.0 0 0.0 8 27
52 52 VAL V G G > > T + 0 0 -66.0 -1.2 -179.9 117.5 34.4 59.0 0 0.0 55 -3.8 0 0.0 56 -3.2 9 19
53 53 ASP D G G 4 3 T + 0 0 -38.3 -29.4 178.6 82.4 56.4 35.1 0 0.0 0 0.0 0 0.0 0 0.0 10 18
54 54 LYS K G G 4 < TS+ 0 0 -43.9 -40.8 179.5 2.1 121.3 26.4 51 -1.0 0 0.0 0 0.0 0 0.0 6 14
55 55 SER S T g 4 < TS+ 0 0 -121.3 -20.8 179.5 39.4 145.9 56.9 52 -3.8 0 0.0 0 0.0 0 0.0 5 11
56 56 GLU E S t < TS- 0 0 -97.3 -107.1 179.2 -84.7 103.5 52.3 52 -3.2 0 0.0 0 0.0 0 0.0 8 15
57 57 SER S h > > T - 0 0 -170.2 129.3 179.4 -127.6 12.4 146.4 0 0.0 60 -2.5 0 0.0 61 -1.5 9 19
58 58 TRP W H H > 3 TS+ 0 0 -49.5 -27.1 179.4 49.5 121.3 32.3 0 0.0 62 -1.6 0 0.0 0 0.0 9 28
59 59 SER S H H 4 3 TS+ 0 0 -85.4 -16.8 179.4 61.6 101.7 46.9 0 0.0 0 0.0 0 0.0 0 0.0 7 28
60 60 ASP D H H 4 < TS+ 0 0 -80.6 -18.5 179.5 36.6 113.2 44.0 57 -2.5 0 0.0 0 0.0 0 0.0 8 21
61 61 LEU L H H < TS+ 0 0 -95.1 -63.3 179.8 88.3 93.1 27.2 57 -1.5 0 0.0 0 0.0 0 0.0 13 28
62 62 LEU L h < T - 0 0 -37.9 122.1 179.6 -150.8 68.6 93.0 58 -1.6 0 0.0 0 0.0 0 0.0 10 36
63 63 ARG R E E AA - 47 0 -107.7 105.7 179.8 -155.4 4.2 149.5 47 -3.3 47 -1.9 0 0.0 0 0.0 9 35
64 64 PRO P E E AA + 46 0 -78.2 128.4 -177.9 123.3 39.3 127.5 0 0.0 0 0.0 0 0.0 0 0.0 8 34
65 65 VAL V E E AA + 45 0 -151.0 -135.6 -178.6 56.5 33.3 117.1 45 -2.1 45 -1.5 0 0.0 0 0.0 7 34
66 66 THR T E E A* + 0 0 -13.4 112.5 177.4 176.3 49.3 69.9 0 0.0 0 0.0 0 0.0 0 0.0 9 34
67 67 SER S E E A* + 0 0 -130.7 89.0 -177.8 126.1 25.5 143.0 0 0.0 0 0.0 0 0.0 0 0.0 8 39
68 68 PHE F E E AA - 43 0 -133.1 -173.8 179.5 -116.2 63.2 135.2 43 -1.2 43 -1.5 0 0.0 0 0.0 9 38
69 69 GLN Q E E A* S+ 0 0 -121.7 47.0 -179.3 76.2 83.4 108.0 0 0.0 39 -3.3 0 0.0 0 0.0 10 41
70 70 THR T E E AA S- 38 0 -137.8 -164.5 179.7 -124.5 74.1 131.3 0 0.0 0 0.0 0 0.0 0 0.0 12 43
71 71 VAL V S h > TS+ 0 0 -121.9 -27.2 179.6 77.4 92.4 52.5 37 -1.9 75 -3.4 0 0.0 0 0.0 12 42
72 72 GLU E H H > TS+ 0 0 -51.5 -50.0 180.0 45.7 99.6 18.9 0 0.0 76 -1.3 0 0.0 0 0.0 8 38
73 73 GLU E H H > > TS+ 0 0 -58.7 -64.1 179.3 44.1 115.1 5.6 0 0.0 76 -2.1 0 0.0 77 -1.2 9 42
74 74 PHE F H H > 3 TS+ 0 0 -46.4 -46.7 179.2 57.5 110.2 21.2 0 0.0 78 -1.4 0 0.0 0 0.0 11 55
75 75 TRP W H H X 3 TS+ 0 0 -54.8 -28.6 179.3 65.4 97.7 33.1 71 -3.4 79 -2.7 0 0.0 0 0.0 9 47
76 76 ALA A H H X < TS+ 0 0 -59.3 -57.8 178.9 50.4 96.8 8.8 73 -2.1 80 -1.3 72 -1.3 0 0.0 8 35
77 77 ILE I H H < TS+ 0 0 -49.7 -31.2 178.9 44.5 116.9 29.8 73 -1.2 0 0.0 0 0.0 0 0.0 8 48
78 78 ILE I H H < > TS+ 0 0 -82.9 -29.9 179.6 76.0 94.7 35.6 74 -1.4 81 -4.0 0 0.0 0 0.0 11 46
79 79 GLN Q H H < 3 TS+ 0 0 -49.1 -32.2 179.1 56.9 92.1 30.2 75 -2.7 0 0.0 0 0.0 0 0.0 6 26
80 80 ASN N T h < 3 TS- 0 0 -74.0 -10.7 -178.3 -155.3 93.9 51.9 76 -1.3 0 0.0 0 0.0 0 0.0 6 28
81 81 ILE I t < T + 0 0 33.8 50.1 179.4 138.7 46.5 32.9 78 -4.0 0 0.0 0 0.0 0 0.0 9 36
82 82 PRO P t > >T + 0 0 -93.4 -14.0 -179.4 64.1 58.9 54.4 0 0.0 86 -1.7 0 0.0 87 -1.3 8 42
83 83 GLU E T T 4 5TS+ 0 0 -76.7 -42.9 -179.0 73.5 82.6 25.0 0 0.0 85 -3.8 0 0.0 0 0.0 12 54
84 84 PRO P T T 4 5TS- 0 0 -69.0 55.0 -179.8 -67.1 138.3 100.9 0 0.0 0 0.0 0 0.0 0 0.0 12 46
85 85 HIS H T T 4 5TS+ 0 0 61.6 50.7 -179.4 112.6 113.4 14.4 83 -3.8 0 0.0 0 0.0 0 0.0 10 41
86 86 GLU E T T < 5T + 0 0 -130.8 -3.9 -179.7 57.9 62.4 66.5 82 -1.7 0 0.0 0 0.0 0 0.0 9 31
87 87 LEU L S t > T - 0 0 157.8 167.8 178.6 -63.9 51.2 147.2 0 0.0 107 -5.6 0 0.0 106 -3.0 7 52
104 104 TRP W T T 4 3 TS+ 0 0 -49.2 -18.0 -178.7 61.6 132.7 41.5 0 0.0 0 0.0 0 0.0 0 0.0 7 57
105 105 GLU E T T 4 3 TS+ 0 0 -82.8 -23.5 179.6 5.0 128.9 41.0 0 0.0 0 0.0 0 0.0 0 0.0 9 41
106 106 ASP D T T > < TS+ 0 0 -134.7 -15.4 178.1 90.0 105.5 60.5 103 -3.0 110 -1.4 0 0.0 0 0.0 12 41
107 107 GLU E T T < TS+ 0 0 -52.9 -29.4 177.4 49.8 96.6 27.8 103 -5.6 0 0.0 0 0.0 0 0.0 14 47
108 108 ALA A T T > > TS+ 0 0 -75.3 -34.5 177.4 67.5 96.1 28.1 0 0.0 111 -3.2 0 0.0 112 -1.1 18 49
109 109 ASN N T T 4 3 TS+ 0 0 -53.2 -24.7 178.7 87.2 76.5 34.3 0 0.0 0 0.0 0 0.0 0 0.0 9 39
110 110 ALA A T T < 3 TS- 0 0 -46.5 -22.6 179.5 -110.8 114.9 40.5 106 -1.4 0 0.0 0 0.0 0 0.0 14 42
111 111 LYS K T T 4 < TS+ 0 0 91.9 39.7 179.7 87.5 91.6 35.7 108 -3.2 0 0.0 0 0.0 0 0.0 9 42
112 112 GLY G S t < TS- 0 0 -127.5 -95.3 -179.5 -108.4 76.0 68.2 108 -1.1 0 0.0 0 0.0 0 0.0 16 54
113 113 GLY G E E AD - 167 0 170.6 175.5 -179.8 -100.7 18.8 163.7 167 -0.8 167 -1.0 0 0.0 115 -0.5 16 61
114 114 LYS K E E ADE - 166 197 -126.3 98.2 179.7 -168.4 28.6 146.4 197 -5.0 197 -1.2 0 0.0 116 -0.6 13 70
115 115 TRP W E E ADE - 165 196 -86.3 119.5 -179.8 -176.7 13.8 136.2 165 -2.7 165 -2.7 113 -0.5 0 0.0 15 69
116 116 SER S E E ADE - 164 195 -113.1 163.6 -180.0 -159.8 16.0 138.0 195 -3.3 195 -3.2 114 -0.6 0 0.0 12 63
117 117 PHE F E E AD - 163 0 -145.5 101.5 -179.6 -158.9 4.8 144.0 163 -1.3 163 -1.1 0 0.0 119 -0.8 12 61
118 118 GLN Q E E AD - 162 0 -83.7 112.7 179.8 -167.1 15.8 133.8 0 0.0 0 0.0 0 0.0 0 0.0 11 53
119 119 LEU L E E AD + 161 0 -100.0 148.2 179.8 172.2 17.3 138.0 161 -3.0 161 -0.7 117 -0.8 0 0.0 12 50
120 120 ARG R + 0 0 -117.2 -62.1 179.9 78.7 54.5 44.4 0 0.0 0 0.0 0 0.0 0 0.0 8 39
121 121 GLY G S S S- 0 0 -49.5 141.9 -179.9 -123.5 81.7 99.7 0 0.0 0 0.0 0 0.0 0 0.0 6 33
122 122 LYS K + 0 0 -94.7 131.1 179.7 167.9 36.5 141.2 0 0.0 0 0.0 0 0.0 0 0.0 6 35
123 123 GLY G - 0 0 -111.9 -22.5 179.7 -143.7 33.0 50.7 0 0.0 0 0.0 0 0.0 0 0.0 8 32
124 124 ALA A S S S+ 0 0 75.6 -10.8 -179.8 47.5 93.4 69.5 0 0.0 0 0.0 0 0.0 0 0.0 7 31
125 125 ASP D S S S+ 0 0 -151.8 40.8 180.0 98.2 77.0 92.4 0 0.0 0 0.0 0 0.0 0 0.0 8 31
126 126 ILE I S h > TS+ 0 0 -99.2 -38.4 -179.5 59.0 76.6 35.9 0 0.0 130 -2.4 0 0.0 0 0.0 11 44
127 127 ASP D H H > TS+ 0 0 -66.4 -12.5 -180.0 59.6 101.9 47.2 0 0.0 131 -0.8 0 0.0 0 0.0 9 60
128 128 GLU E H H > TS+ 0 0 -83.1 -37.8 -179.5 37.1 110.9 28.8 0 0.0 132 -1.8 0 0.0 0 0.0 11 44
129 129 LEU L H H > TS+ 0 0 -80.8 -40.6 179.8 49.9 117.3 26.8 0 0.0 133 -1.0 0 0.0 0 0.0 9 39
130 130 TRP W H H X TS+ 0 0 -67.1 -31.7 179.1 49.4 113.0 29.6 126 -2.4 134 -1.4 0 0.0 0 0.0 11 54
131 131 LEU L H H X >TS+ 0 0 -71.6 -52.8 179.0 58.2 101.6 13.1 127 -0.8 135 -2.2 0 0.0 136 -0.8 10 61
132 132 ARG R H H X 5TS+ 0 0 -46.5 -26.6 179.5 48.5 110.9 33.4 128 -1.8 136 -0.6 0 0.0 0 0.0 8 50
133 133 THR T H H X 5TS+ 0 0 -84.0 -33.7 179.5 39.3 116.9 32.5 129 -1.0 137 -1.3 0 0.0 0 0.0 8 48
134 134 LEU L H H X 5TS+ 0 0 -80.0 -57.5 179.5 44.6 118.1 14.6 130 -1.4 138 -1.4 0 0.0 0 0.0 10 71
135 135 LEU L H H < 5TS+ 0 0 -54.4 -35.0 179.7 47.4 118.5 28.1 131 -2.2 0 0.0 0 0.0 0 0.0 12 65
136 136 ALA A H H < > X TS+ 0 0 -157.6 -82.0 -179.8 149.2 72.7 87.3 136 -1.0 142 -3.8 0 0.0 143 -0.6 13 50
140 140 GLU E T T 4 3 TS- 0 0 35.6 32.5 -179.7 -87.8 90.8 35.7 0 0.0 0 0.0 0 0.0 0 0.0 13 42
141 141 THR T T T 4 3 TS+ 0 0 40.8 29.6 -179.6 136.5 96.4 35.9 0 0.0 0 0.0 0 0.0 0 0.0 8 34
142 142 ILE I T T 4 < T - 0 0 -72.8 -38.5 -179.9 -170.3 39.6 26.3 139 -3.8 0 0.0 0 0.0 0 0.0 9 31
143 143 ASP D t < T + 0 0 63.0 158.5 179.9 68.5 58.0 73.8 139 -0.6 0 0.0 0 0.0 0 0.0 9 28
144 144 GLU E S S S+ 0 0 67.7 30.3 179.8 26.3 117.8 32.7 0 0.0 0 0.0 0 0.0 0 0.0 6 27
145 145 ASP D S t > TS+ 0 0 176.8 -44.2 -179.9 68.2 104.6 84.7 0 0.0 149 -1.5 0 0.0 0 0.0 9 47
146 146 ASP D T T 4 TS+ 0 0 -75.4 0.4 -180.0 39.2 112.3 59.5 0 0.0 0 0.0 0 0.0 0 0.0 14 47
147 147 SER S T T 4 TS+ 0 0 -116.8 -37.3 -180.0 45.0 115.8 45.5 0 0.0 0 0.0 0 0.0 0 0.0 10 41
148 148 GLN Q T e 4 TS+ 0 0 -81.1 -21.3 179.9 63.2 110.5 41.8 0 0.0 168 -1.5 0 0.0 170 -1.2 10 45
149 149 ILE I E E T - 0 0 -153.2 172.3 -180.0 -45.7 48.2 161.8 0 0.0 160 -2.2 0 0.0 0 0.0 10 35
158 158 LYS K T T 3 TS- 0 0 -45.6 106.6 179.8 -31.5 123.2 100.7 0 0.0 0 0.0 0 0.0 0 0.0 7 27
159 159 GLY G T T 3 TS+ 0 0 43.1 49.6 -180.0 93.1 129.8 23.4 0 0.0 0 0.0 0 0.0 0 0.0 7 30
160 160 GLY G t < T - 0 0 -169.1 79.0 179.7 -162.0 60.2 110.5 157 -2.2 0 0.0 0 0.0 0 0.0 10 42
161 161 ASN N E E AD - 119 0 -63.1 153.4 -179.8 -169.5 11.7 105.5 119 -0.7 119 -3.0 0 0.0 0 0.0 14 55
162 162 LYS K E E ADF - 118 155 -151.3 119.4 179.1 -169.2 7.8 153.2 155 -2.0 155 -2.3 0 0.0 0 0.0 12 62
163 163 PHE F E E ADF - 117 154 -102.6 166.0 -179.2 -150.3 10.2 127.5 117 -1.1 117 -1.3 0 0.0 0 0.0 12 70
164 164 ALA A E E ADF - 116 153 -140.8 135.0 179.0 -163.4 7.5 171.9 153 -3.4 153 -3.5 0 0.0 166 -0.5 12 73
165 165 LEU L E E ADF - 115 152 -117.8 119.8 -178.8 -159.3 9.4 162.2 115 -2.7 115 -2.7 0 0.0 167 -0.8 12 81
166 166 TRP W E E ADF - 114 151 -104.7 110.1 -179.3 -159.1 10.0 147.2 151 -2.5 151 -3.4 164 -0.5 150 -2.0 15 72
167 167 THR T E E ADF - 113 149 -80.2 162.6 -179.9 -140.6 17.8 111.1 113 -1.0 113 -0.8 165 -0.8 0 0.0 16 67
168 168 LYS K S e S- 0 0 -98.4 -14.5 -179.8 -59.1 75.8 52.6 148 -1.5 0 0.0 0 0.0 0 0.0 16 50
169 169 SER S S S S+ 0 0 151.1 -0.8 -178.7 140.7 83.1 71.2 0 0.0 0 0.0 0 0.0 0 0.0 11 41
170 170 GLU E S S S- 0 0 -41.1 -18.6 -179.8 -113.5 70.6 45.1 148 -1.2 0 0.0 0 0.0 0 0.0 11 40
171 171 ASP D h > T - 0 0 91.2 139.7 -179.3 -90.6 20.7 74.0 0 0.0 175 -1.0 0 0.0 0 0.0 7 35
172 172 LYS K H H > TS+ 0 0 -56.1 -21.8 179.9 75.4 118.3 40.3 0 0.0 176 -3.5 0 0.0 0 0.0 8 41
173 173 GLU E H H > TS+ 0 0 -54.2 -64.4 178.2 34.8 103.1 9.4 0 0.0 177 -1.3 0 0.0 0 0.0 7 27
174 174 PRO P H H > TS+ 0 0 -63.6 -14.0 178.8 58.5 118.8 47.6 0 0.0 178 -2.4 0 0.0 0 0.0 8 33
175 175 LEU L H H X >TS+ 0 0 -81.5 -57.1 178.5 50.8 99.2 15.0 171 -1.0 179 -2.8 0 0.0 180 -0.7 11 48
176 176 LEU L H H X 5TS+ 0 0 -48.3 -25.8 178.8 46.8 117.7 32.3 172 -3.5 180 -0.9 0 0.0 0 0.0 9 39
177 177 ARG R H H X 5TS+ 0 0 -81.6 -50.2 179.1 37.3 118.3 19.8 173 -1.3 181 -1.7 0 0.0 0 0.0 8 33
178 178 ILE I H H X 5TS+ 0 0 -65.6 -56.1 179.3 53.4 115.3 8.9 174 -2.4 182 -3.1 0 0.0 0 0.0 8 48
179 179 GLY G H H X 5TS+ 0 0 -44.9 -46.0 179.4 58.0 105.0 23.4 175 -2.8 183 -2.5 0 0.0 0 0.0 10 54
180 180 GLY G H H X TS+ 0 0 -62.1 -56.3 179.7 51.6 116.9 9.8 177 -1.7 185 -2.3 0 0.0 184 -1.6 8 37
182 182 PHE F H H X 3 TS+ 0 0 -51.8 -24.9 179.6 62.2 104.5 35.9 178 -3.1 186 -0.8 0 0.0 0 0.0 9 54
183 183 LYS K H H < 3>TS+ 0 0 -70.1 -35.9 -179.6 40.6 107.7 28.0 179 -2.5 188 -0.5 0 0.0 0 0.0 13 46
184 184 GLN Q H H < X5TS+ 0 0 -80.5 -38.8 179.7 71.4 99.4 27.2 181 -1.6 187 -4.7 180 -1.2 0 0.0 10 41
185 185 VAL V H H < 35TS+ 0 0 -45.9 -31.2 179.8 68.4 87.3 32.2 181 -2.3 0 0.0 0 0.0 0 0.0 10 45
186 186 LEU L T h < 35TS- 0 0 -64.5 -11.1 -179.9 -126.1 111.7 47.9 182 -0.8 0 0.0 0 0.0 0 0.0 10 50
187 187 LYS K T T <5T + 0 0 68.4 37.5 -179.7 139.8 62.6 26.3 184 -4.7 0 0.0 0 0.0 0 0.0 8 37
188 188 LEU L t T - 0 0 -82.9 163.6 179.7 -90.1 46.4 113.1 0 0.0 201 -3.4 0 0.0 0 0.0 13 49
199 199 HIS H G G > TS+ 0 0 -45.3 -24.9 -180.0 84.9 119.1 36.9 0 0.0 202 -0.7 0 0.0 0 0.0 15 48
200 200 SER S G G > TS+ 0 0 -52.7 -18.1 -179.8 57.7 84.8 42.3 0 0.0 203 -0.6 0 0.0 0 0.0 13 34
201 201 SER S G G X TS+ 0 0 -81.2 -42.7 179.9 49.1 102.6 24.4 198 -3.4 204 -0.8 0 0.0 0 0.0 10 36
202 202 ALA A G G < TS+ 0 0 -86.5 36.2 179.9 30.0 125.4 91.9 199 -0.7 0 0.0 0 0.0 0 0.0 11 35
203 203 ASN N G G < TS- 0 0 -178.4 30.8 -179.9 -30.2 141.1 78.6 200 -0.6 0 0.0 0 0.0 0 0.0 7 25
204 204 GLY G g < T - 0 0 109.9 83.1 -179.9 -149.6 52.2 46.0 201 -0.8 206 -2.4 0 0.0 0 0.0 6 20
205 205 ARG R + 0 0 -77.2 54.3 -180.0 139.9 48.2 102.8 0 0.0 0 0.0 0 0.0 0 0.0 9 23
206 206 HIS H + 0 0 -60.5 -60.0 -179.9 44.8 62.4 8.3 204 -2.4 0 0.0 0 0.0 0 0.0 6 13
207 207 PRO P S S S- 0 0 -72.4 -175.5 179.9 -76.0 108.6 89.3 0 0.0 0 0.0 0 0.0 0 0.0 5 16
208 208 GLN Q - 0 0 -88.8 144.6 -179.8 -148.2 35.0 130.8 0 0.0 0 0.0 0 0.0 0 0.0 5 21
209 209 PRO P - 0 0 -73.8 -94.5 179.6 -92.3 41.3 23.2 0 0.0 0 0.0 0 0.0 0 0.0 10 34
210 210 SER S S S S- 0 0 -153.9 -60.5 179.5 -47.3 70.6 73.5 196 -1.0 0 0.0 0 0.0 0 0.0 9 37
211 211 ILE I E E AG - 196 0 -172.6 176.0 180.0 -143.9 32.9 170.9 196 -1.1 196 -2.7 0 0.0 0 0.0 8 33
212 212 THR T E E AG 195 0 -160.1 99.4 -179.9 999.9 999.9 132.3 0 0.0 0 0.0 0 0.0 0 0.0 7 32
213 213 LEU L e 0 0 -78.3 999.9 999.9 999.9 999.9 21.5 194 -1.3 0 0.0 0 0.0 0 0.0 7 31
1ap8-.pdb
1AP8 RNA CAP MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand S SSS SS S SSEEEEEEEEEEE GGGTS HHHH EEEEEEEESHHHHHHHHT TTTTS S EEEEE SS Kabs/Sand
chirality ++--+--++++++-+--++++++-+-++++++++-++-+-+--++-++-+++++--++++--++++-+-+++++++++-+++-++--++---++++-++ chirality
bends S SSS SS S SS S SSS SSSS SSSSSSSSSSSS SSS S S SS bends
turns TTTTTTTTTTTT TTTTTTTTTTTTTTTTT turns
5-turns >5555< 5-turns
3-turns >>3<< >33< >33< >33< 3-turns
bridge-2 BBBBB CCCC bridge-2
bridge-1 A****A*AAA AAA**A*A BBBBB bridge-1
sheets AAAAAAAAAAA AAAAAAAA AAAAA sheets
4-turns >444<>>44<< >>>>XX<<<< >444< 4-turns
summary S SSS SS S SeEEEEEEEEEEE gGGGgthHHHHhEEEEEEEEhHHHHHHHHhttTTTTt S EEEEEeSS summary
sequence MSVEEVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWAIIQNIPEPHELPLKSDYHVFRNDV sequence
10 20 30 40 50 60 70 80 90 100
author author
Kabs/Sand S TTTTTTTTSEEEEEEE S SSSHHHHHHHHHHHTSTTT SSTTTEEEEEEE TT EEEEEEESSS HHHHHHHHHHHHHHTT SS EEE GG Kabs/Sand
chirality +--++++++-+-------++-+-++++++++++++++-+-+-++++++-----+----+---------+--++++++++++++++-+++---+--+--++ chirality
bends S SSSSSSSSS S SSSSSSSSSSSSSSSSSS SSSSS SS SSS SSSSSSSSSSSSSSS SS SS bends
turns TTTTTTTTTT TTTTTTTTTTTTTTTTTT TTTTT TTTT TTTTTTTTTTTTTTTTTT TTT turns
5-turns >5555< >5555< >5555< 5-turns
3-turns >33< >33< >33X33< >33< >33X33< >>> 3-turns
bridge-2 EEE F*FFFFF FFFFFF GG bridge-2
bridge-1 DDDDDDD CCCC DDDDDDD EEE bridge-1
sheets AAAAAAA AAAAAAA AAAAAAA AAA sheets
4-turns >44><>4<4< >>>>XXXXX<<<<>444< >444< >>>>XXXXXXXX<<<< 4-turns
summary StTTTTTTTTtEEEEEEE S SShHHHHHHHHHHHhtTTTtStTTeEEEEEEE tTTtEEEEEEEeSShHHHHHHHHHHHHHHhTt SS eEEEgGG summary
sequence RPEWEDEANAKGGKWSFQLRGKGADIDELWLRTLLAVIGETIDEDDSQINGVVLSIRKGGNKFALWTKSEDKEPLLRIGGKFKQVLKLTDDGHLEFFPHS sequence
110 120 130 140 150 160 170 180 190 200
author author
Kabs/Sand GGG S SEE Kabs/Sand
chirality ++--++----- chirality
bends SSS S S bends
turns TTTT turns
5-turns 5-turns
3-turns X<<< 3-turns
bridge-2 bridge-2
bridge-1 GG bridge-1
sheets AA sheets
4-turns 4-turns
summary GGGg S SEEe summary
sequence SANGRHPQPSITL sequence
210