Secondary structure calculation program - copyright by David Keith Smith, 1989
1am9A.pdb
1AM9 COMPLEX (TRANSCRIPTION REGULATION/DNA) MOL_ID: 1; MOL_ID: 1;
Sequence length - 80
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 A 319 GLN Q 0 0 999.9 122.0 178.6 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 5 12
2 A 320 SER S h > > T - 0 0 -76.3 166.1 -179.7 -95.8 999.9 112.7 0 0.0 6 -3.7 0 0.0 5 -0.7 5 9
3 A 321 ARG R H H > 3 TS+ 0 0 -50.6 -44.5 -178.0 51.2 130.9 20.3 0 0.0 7 -3.2 0 0.0 0 0.0 6 10
4 A 322 GLY G H H > 3 TS+ 0 0 -61.3 -38.9 179.8 41.0 114.3 34.8 0 0.0 8 -1.9 0 0.0 0 0.0 7 11
5 A 323 GLU E H H > < TS+ 0 0 -75.0 -43.3 179.2 52.3 113.2 25.3 2 -0.7 9 -2.6 0 0.0 0 0.0 8 12
6 A 324 LYS K H H X TS+ 0 0 -56.5 -42.3 -179.7 51.8 110.6 21.0 2 -3.7 10 -3.5 0 0.0 0 0.0 9 14
7 A 325 ARG R H H X TS+ 0 0 -60.1 -54.6 -179.3 46.0 109.9 17.7 3 -3.2 11 -2.1 0 0.0 0 0.0 8 14
8 A 326 THR T H H X TS+ 0 0 -59.3 -37.1 -178.4 47.4 115.9 26.4 4 -1.9 12 -1.2 0 0.0 0 0.0 8 15
9 A 327 ALA A H H X > TS+ 0 0 -69.3 -47.7 -178.8 55.2 107.7 16.4 5 -2.6 13 -2.0 0 0.0 12 -0.7 8 16
10 A 328 HIS H H H X 3 TS+ 0 0 -52.6 -40.4 -178.5 55.7 103.2 31.9 6 -3.5 14 -3.1 0 0.0 0 0.0 8 18
11 A 329 ASN N H H X 3 TS+ 0 0 -64.5 -34.5 179.7 45.7 110.1 28.2 7 -2.1 15 -0.9 0 0.0 0 0.0 8 17
12 A 330 ALA A H H X < TS+ 0 0 -76.9 -30.9 178.8 50.3 112.5 37.3 8 -1.2 16 -1.7 9 -0.7 0 0.0 8 17
13 A 331 ILE I H H X TS+ 0 0 -68.8 -45.7 179.2 49.3 111.3 23.9 9 -2.0 17 -2.5 0 0.0 0 0.0 8 17
14 A 332 GLU E H H X TS+ 0 0 -66.8 -23.7 178.9 56.5 106.4 41.4 10 -3.1 18 -2.3 0 0.0 0 0.0 8 17
15 A 333 LYS K H H X TS+ 0 0 -72.4 -44.7 178.0 45.2 109.3 20.0 11 -0.9 19 -1.8 0 0.0 0 0.0 8 17
16 A 334 ARG R H H X TS+ 0 0 -60.8 -39.9 178.6 54.8 111.6 29.4 12 -1.7 20 -1.9 0 0.0 0 0.0 8 16
17 A 335 TYR Y H H X TS+ 0 0 -58.2 -59.0 178.4 47.2 107.7 17.4 13 -2.5 21 -0.7 0 0.0 0 0.0 8 16
18 A 336 ARG R H H X > TS+ 0 0 -50.7 -45.3 -179.8 51.5 111.4 31.1 14 -2.3 22 -3.5 0 0.0 21 -0.8 8 17
19 A 337 SER S H H X 3 TS+ 0 0 -63.1 -35.7 -178.7 61.8 101.0 29.3 15 -1.8 23 -2.7 0 0.0 0 0.0 9 19
20 A 338 SER S H H < 3 TS+ 0 0 -64.3 -19.3 179.6 30.5 118.0 47.0 16 -1.9 0 0.0 0 0.0 0 0.0 8 17
21 A 339 ILE I H H X X TS+ 0 0 -102.1 -52.8 -178.0 46.6 121.5 35.3 18 -0.8 25 -2.2 17 -0.7 24 -0.5 8 21
22 A 340 ASN N H H X 3 TS+ 0 0 -61.9 -39.5 179.8 56.2 108.9 27.4 18 -3.5 26 -1.9 0 0.0 0 0.0 8 24
23 A 341 ASP D H H X 3 TS+ 0 0 -62.0 -31.5 179.5 44.9 111.6 31.3 19 -2.7 27 -0.8 0 0.0 0 0.0 8 24
24 A 342 LYS K H H > < TS+ 0 0 -81.3 -34.0 178.3 57.9 105.7 36.7 21 -0.5 28 -2.2 0 0.0 0 0.0 9 28
25 A 343 ILE I H H X TS+ 0 0 -66.9 -27.7 178.8 48.9 108.4 30.4 21 -2.2 29 -2.1 0 0.0 0 0.0 11 31
26 A 344 ILE I H H X TS+ 0 0 -80.8 -23.2 176.6 54.6 106.6 35.5 22 -1.9 30 -2.5 0 0.0 0 0.0 8 30
27 A 345 GLU E H H X TS+ 0 0 -71.1 -38.2 177.1 45.3 112.6 28.6 23 -0.8 31 -1.0 0 0.0 0 0.0 8 31
28 A 346 LEU L H H X TS+ 0 0 -70.6 -40.2 178.9 55.2 109.2 29.1 24 -2.2 32 -2.0 0 0.0 0 0.0 11 33
29 A 347 LYS K H H X >TS+ 0 0 -57.1 -52.2 179.5 50.1 106.9 13.7 25 -2.1 33 -3.2 0 0.0 34 -1.1 15 31
30 A 348 ASP D H H < 5TS+ 0 0 -57.0 -29.6 -179.8 50.8 110.9 37.7 26 -2.5 0 0.0 0 0.0 0 0.0 11 29
31 A 349 LEU L H H < 5TS+ 0 0 -78.3 -34.0 -178.1 34.7 118.7 33.3 27 -1.0 0 0.0 0 0.0 0 0.0 9 31
32 A 350 VAL V H H < 5TS+ 0 0 -92.2 -32.0 179.8 7.0 140.5 38.5 28 -2.0 0 0.0 0 0.0 0 0.0 10 31
33 A 351 VAL V T h < 5TS- 0 0 -129.0 -8.6 178.3 -102.3 107.7 62.2 29 -3.2 0 0.0 0 0.0 0 0.0 9 28
34 A 352 GLY G t > T - 0 0 -74.0 158.9 -177.8 -102.4 36.4 114.6 0 0.0 44 -1.7 0 0.0 43 -0.8 6 27
41 A 359 LYS K H H > 3 TS+ 0 0 -47.6 -54.2 -178.1 45.2 115.8 36.4 0 0.0 45 -2.2 0 0.0 0 0.0 7 29
42 A 360 SER S H H > 3 TS+ 0 0 -66.8 -27.4 -178.9 49.7 114.3 33.8 0 0.0 46 -2.2 0 0.0 0 0.0 6 24
43 A 361 ALA A H H > < TS+ 0 0 -80.0 -29.7 176.7 53.9 108.3 41.3 40 -0.8 47 -1.5 0 0.0 0 0.0 8 26
44 A 362 VAL V H H X TS+ 0 0 -67.5 -47.0 -179.7 43.7 112.4 18.8 40 -1.7 48 -2.4 0 0.0 0 0.0 13 31
45 A 363 LEU L H H X TS+ 0 0 -67.2 -40.2 178.3 53.2 111.2 27.0 41 -2.2 49 -2.4 0 0.0 0 0.0 11 30
46 A 364 ARG R H H X TS+ 0 0 -59.0 -40.0 -179.5 46.1 112.6 26.9 42 -2.2 50 -1.8 0 0.0 0 0.0 8 24
47 A 365 LYS K H H X TS+ 0 0 -68.5 -42.0 177.8 54.1 109.2 29.7 43 -1.5 51 -2.5 0 0.0 0 0.0 9 30
48 A 366 ALA A H H X TS+ 0 0 -57.0 -48.4 178.7 49.5 109.3 22.1 44 -2.4 52 -2.9 0 0.0 0 0.0 12 28
49 A 367 ILE I H H X TS+ 0 0 -57.5 -51.9 -179.6 40.8 115.7 24.0 45 -2.4 53 -2.1 0 0.0 0 0.0 8 24
50 A 368 ASP D H H X TS+ 0 0 -69.2 -33.9 178.8 53.8 114.0 34.9 46 -1.8 54 -1.7 0 0.0 0 0.0 8 21
51 A 369 TYR Y H H X TS+ 0 0 -66.2 -47.0 178.4 50.2 107.9 18.9 47 -2.5 55 -2.9 0 0.0 0 0.0 9 25
52 A 370 ILE I H H X TS+ 0 0 -55.2 -52.3 179.8 49.0 111.3 13.5 48 -2.9 56 -2.8 0 0.0 0 0.0 8 23
53 A 371 ARG R H H X TS+ 0 0 -55.9 -37.4 -179.9 48.3 112.5 32.6 49 -2.1 57 -2.3 0 0.0 0 0.0 8 19
54 A 372 PHE F H H X TS+ 0 0 -70.1 -39.2 -179.2 49.9 110.9 25.8 50 -1.7 58 -2.3 0 0.0 0 0.0 8 20
55 A 373 LEU L H H X TS+ 0 0 -64.7 -37.7 177.9 48.9 112.6 31.0 51 -2.9 59 -2.5 0 0.0 0 0.0 8 18
56 A 374 GLN Q H H X TS+ 0 0 -66.1 -49.6 -179.2 45.3 112.9 24.0 52 -2.8 60 -2.0 0 0.0 0 0.0 8 17
57 A 375 HIS H H H X TS+ 0 0 -62.7 -37.4 -179.8 49.7 114.5 29.8 53 -2.3 61 -2.1 0 0.0 0 0.0 8 16
58 A 376 SER S H H X TS+ 0 0 -66.4 -48.6 179.4 54.2 106.8 21.3 54 -2.3 62 -3.9 0 0.0 0 0.0 8 16
59 A 377 ASN N H H X TS+ 0 0 -54.1 -47.1 179.3 47.4 110.2 17.6 55 -2.5 63 -2.6 0 0.0 0 0.0 8 16
60 A 378 GLN Q H H X TS+ 0 0 -60.4 -44.8 179.6 47.1 114.3 22.8 56 -2.0 64 -2.2 0 0.0 0 0.0 8 16
61 A 379 LYS K H H X TS+ 0 0 -60.5 -47.3 -179.2 49.4 112.8 20.1 57 -2.1 65 -2.3 0 0.0 0 0.0 8 17
62 A 380 LEU L H H X TS+ 0 0 -61.8 -38.0 -179.7 50.3 110.1 33.4 58 -3.9 66 -2.3 0 0.0 0 0.0 8 17
63 A 381 LYS K H H X TS+ 0 0 -70.3 -42.0 179.6 49.2 110.2 24.5 59 -2.6 67 -2.3 0 0.0 0 0.0 8 18
64 A 382 GLN Q H H X TS+ 0 0 -61.7 -41.7 -179.5 47.7 113.3 20.7 60 -2.2 68 -2.4 0 0.0 0 0.0 8 16
65 A 383 GLU E H H X TS+ 0 0 -63.3 -43.7 179.5 54.5 108.3 27.8 61 -2.3 69 -2.8 0 0.0 0 0.0 8 16
66 A 384 ASN N H H X TS+ 0 0 -57.2 -41.8 -179.9 48.0 109.7 24.2 62 -2.3 70 -2.5 0 0.0 0 0.0 8 16
67 A 385 LEU L H H X TS+ 0 0 -67.6 -47.5 177.7 48.1 112.0 19.7 63 -2.3 71 -2.8 0 0.0 0 0.0 8 17
68 A 386 SER S H H X TS+ 0 0 -59.9 -41.5 178.9 49.1 112.2 27.5 64 -2.4 72 -1.4 0 0.0 0 0.0 8 16
69 A 387 LEU L H H X TS+ 0 0 -62.4 -43.4 -179.8 47.8 113.7 18.1 65 -2.8 73 -2.8 0 0.0 0 0.0 8 17
70 A 388 ARG R H H X TS+ 0 0 -64.0 -39.3 178.7 47.6 112.1 32.0 66 -2.5 74 -1.8 0 0.0 0 0.0 8 16
71 A 389 THR T H H X TS+ 0 0 -73.8 -21.7 178.9 53.5 111.9 45.5 67 -2.8 75 -1.5 0 0.0 0 0.0 8 16
72 A 390 ALA A H H X TS+ 0 0 -73.4 -58.7 179.3 47.6 107.6 16.8 68 -1.4 76 -2.4 0 0.0 0 0.0 8 16
73 A 391 VAL V H H < TS+ 0 0 -49.4 -44.5 179.6 55.2 110.4 26.2 69 -2.8 0 0.0 0 0.0 0 0.0 8 14
74 A 392 HIS H H H X > TS+ 0 0 -55.4 -59.6 -179.4 43.6 109.2 16.9 70 -1.8 78 -3.4 0 0.0 77 -1.4 8 14
75 A 393 LYS K H H X 3 TS+ 0 0 -55.6 -34.2 179.7 75.5 98.4 27.7 71 -1.5 79 -0.6 0 0.0 0 0.0 8 13
76 A 394 SER S H H < 3 TS+ 0 0 -61.3 9.5 -179.8 13.2 119.9 72.7 72 -2.4 0 0.0 0 0.0 0 0.0 7 13
77 A 395 LYS K H H 4 < TS+ 0 0 -147.7 -52.6 -179.4 77.2 112.1 76.3 74 -1.4 79 -1.0 0 0.0 0 0.0 6 11
78 A 396 SER S H H < T + 0 0 -55.8 14.8 179.2 128.2 61.7 73.5 74 -3.4 80 -0.9 0 0.0 0 0.0 6 11
79 A 397 LEU L h < T 0 0 -80.5 105.7 -179.9 999.9 999.9 132.7 77 -1.0 0 0.0 75 -0.6 0 0.0 5 9
80 A 398 LYS K 0 0 -89.0 999.9 999.9 999.9 999.9 58.8 78 -0.9 0 0.0 0 0.0 0 0.0 2 6
1am9A.pdb
1AM9 COMPLEX (TRANSCRIPTION REGULATION/DNA) MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT SS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Kabs/Sand
chirality -++++++++++++++++++++++++++++++--++-+--++++++++++++++++++++++++++++++++++++++ chirality
bends SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS SS SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS bends
turns TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT turns
5-turns >5555< 5-turns
3-turns >33< >33< >33X33< >33< >33< 3-turns
bridge-2 bridge-2
bridge-1 bridge-1
sheets sheets
4-turns >>>>XXXXXXXXXXXXXXXXXXX<<<< >>>>XXXXXXXXXXXXXXXXXXXXXXXXXXXXX