Secondary structure calculation program - copyright by David Keith Smith, 1989
1ah9-.pdb
1AH9 RIBOSOME BINDING MOL_ID: 1; MOL_ID: 1;
Sequence length - 71
A A K K hydrogen bonding Ooi's
strk chain/ l amino u & S structure bridge dihedral angles donor acceptor donor acceptor N N
num seq.no t acids t S + patterns partners phi psi omega alpha kappa tco to/energy fr/energy to/energy fr/energy 8 14
1 1 ALA A 0 0 999.9 -54.2 178.5 999.9 999.9 999.9 0 0.0 0 0.0 0 0.0 0 0.0 3 7
2 2 LYS K + 0 0 -123.7 -87.0 178.7 20.7 999.9 62.9 0 0.0 4 -1.2 0 0.0 0 0.0 3 8
3 3 GLU E S S S+ 0 0 -87.2 56.4 179.2 158.3 86.8 107.7 0 0.0 0 0.0 0 0.0 0 0.0 6 13
4 4 ASP D - 0 0 -80.3 155.3 178.0 -100.4 47.0 112.3 2 -1.2 0 0.0 0 0.0 0 0.0 7 15
5 5 ASN N - 0 0 -76.9 128.9 -177.4 -145.7 37.3 126.0 0 0.0 0 0.0 0 0.0 0 0.0 8 25
6 6 ILE I E E AA - 56 0 -96.7 141.1 165.7 -129.7 10.6 136.9 56 -1.0 56 -2.3 0 0.0 8 -0.5 8 32
7 7 GLU E E E AA + 55 0 -92.3 126.2 -152.8 150.3 46.3 144.9 0 0.0 0 0.0 0 0.0 0 0.0 9 38
8 8 MET M e - 0 0 -168.5 83.0 -159.1 -173.7 25.7 137.6 54 -0.9 0 0.0 6 -0.5 0 0.0 10 42
9 9 GLN Q e - 0 0 -98.5 -153.0 -170.1 -165.8 12.1 71.3 0 0.0 26 -1.8 0 0.0 0 0.0 12 45
10 10 GLY G E E BBC - 52 25 -167.4 -174.4 172.9 -68.3 33.2 159.3 52 -0.9 52 -0.8 0 0.0 0 0.0 13 47
11 11 THR T E E BBC - 51 24 -100.5 125.0 175.3 -118.0 51.3 158.5 24 -2.1 24 -1.9 0 0.0 0 0.0 11 42
12 12 VAL V E E B C + 0 23 -60.7 117.5 171.5 170.9 39.0 121.0 50 -1.5 0 0.0 0 0.0 0 0.0 15 43
13 13 LEU L E E B * S+ 0 0 -100.9 -26.4 162.2 15.7 71.3 44.5 22 -1.9 0 0.0 0 0.0 0 0.0 10 34
14 14 GLU E E E B C - 0 22 -136.4 145.9 168.2 -142.2 63.9 174.7 22 -0.9 22 -2.7 0 0.0 16 -0.7 10 33
15 15 THR T E E B C - 0 21 -96.6 110.3 -159.2 -151.1 42.8 158.1 0 0.0 0 0.0 0 0.0 0 0.0 11 35
16 16 LEU L e - 0 0 -79.6 -124.9 -176.5 -42.7 35.9 42.9 14 -0.7 0 0.0 20 -0.5 0 0.0 8 30
17 17 PRO P S S S- 0 0 -73.4 -70.5 175.7 -2.3 127.4 3.8 0 0.0 0 0.0 0 0.0 0 0.0 5 18
18 18 ASN N S S S- 0 0 -78.7 -70.3 175.0 -38.8 138.4 16.6 0 0.0 0 0.0 0 0.0 0 0.0 4 21
19 19 THR T S e S+ 0 0 -159.3 75.9 176.3 134.9 93.2 121.1 0 0.0 35 -0.7 0 0.0 0 0.0 8 36
20 20 MET M E E B D - 0 34 -118.6 -175.4 -166.5 -125.9 45.4 123.9 0 0.0 16 -0.5 0 0.0 0 0.0 12 44
21 21 PHE F E E BCD - 15 33 -144.3 109.9 170.2 -157.7 5.8 159.2 33 -2.8 33 -2.2 0 0.0 23 -1.2 12 46
22 22 ARG R E E BCD - 14 32 -85.3 93.9 -163.9 -166.1 43.8 143.2 14 -2.7 13 -1.9 0 0.0 14 -0.9 13 42
23 23 VAL V E E BCD - 12 31 -100.9 135.2 168.5 -141.6 32.8 136.8 31 -2.5 31 -2.9 21 -1.2 25 -0.7 13 45
24 24 GLU E E E BCD - 11 30 -85.9 116.2 -172.9 -139.3 39.8 143.9 11 -1.9 11 -2.1 0 0.0 0 0.0 12 40
25 25 LEU L E E BC > T - 10 0 -70.5 174.9 165.5 -107.7 21.4 92.4 29 -2.4 28 -0.9 23 -0.7 0 0.0 12 40
26 26 GLU E T e 3 TS+ 0 0 -70.1 -24.2 169.2 60.1 122.9 41.1 9 -1.8 0 0.0 0 0.0 0 0.0 8 34
27 27 ASN N T T 3 TS- 0 0 -75.6 -8.2 -177.3 -109.8 121.1 63.0 0 0.0 0 0.0 0 0.0 0 0.0 4 25
28 28 GLY G S t < TS+ 0 0 86.7 9.3 -178.1 115.1 79.7 59.0 25 -0.9 0 0.0 0 0.0 0 0.0 6 21
29 29 HIS H e - 0 0 -114.4 147.5 179.3 -112.6 67.7 146.0 0 0.0 25 -2.4 0 0.0 0 0.0 7 27
30 30 VAL V E E BD - 24 0 -82.3 126.9 179.7 -178.5 38.5 129.2 0 0.0 0 0.0 0 0.0 0 0.0 9 35
31 31 VAL V E E BD - 23 0 -124.3 147.7 172.2 -127.1 27.5 157.6 23 -2.9 23 -2.5 0 0.0 33 -0.5 12 40
32 32 THR T E E BDe + 22 63 -89.6 123.6 177.0 170.6 41.9 145.7 62 -1.7 64 -1.4 0 0.0 0 0.0 11 41
33 33 ALA A E E BDe - 21 64 -139.3 155.2 173.0 -160.3 27.1 164.4 21 -2.2 21 -2.8 31 -0.5 0 0.0 13 51
34 34 HIS H E E BDe - 20 65 -113.3 159.7 166.8 -106.4 34.8 149.3 64 -1.2 66 -0.8 0 0.0 0 0.0 10 51
35 35 ILE I E E B e - 0 66 -73.0 176.3 -175.1 -86.5 50.0 105.2 19 -0.7 0 0.0 0 0.0 0 0.0 11 49
36 36 SER S e - 0 0 -79.9 25.2 177.2 -123.3 47.3 79.0 66 -1.7 38 -2.1 0 0.0 0 0.0 9 34
37 37 GLY G S S S+ 0 0 72.8 -52.4 -179.2 73.6 96.6 102.4 0 0.0 0 0.0 0 0.0 0 0.0 5 25
38 38 LYS K S g > TS+ 0 0 -59.8 -58.2 176.0 41.1 96.8 20.9 36 -2.1 41 -0.8 0 0.0 0 0.0 5 18
39 39 MET M G G >>TS+ 0 0 -70.3 -21.5 170.8 91.1 89.4 45.7 0 0.0 42 -1.2 0 0.0 44 -0.8 8 21
40 40 ARG R G G 35TS+ 0 0 -38.4 -39.0 176.6 44.6 91.7 41.8 0 0.0 0 0.0 0 0.0 0 0.0 10 26
41 41 LYS K G G <5TS+ 0 0 -98.0 -4.5 153.5 54.5 105.1 57.2 38 -0.8 0 0.0 0 0.0 0 0.0 6 14
42 42 ASN N T g <5TS- 0 0 -93.5 53.2 -152.8 -136.4 115.6 118.3 39 -1.2 0 0.0 0 0.0 0 0.0 5 14
43 43 TYR Y T T 5T - 0 0 -45.7 98.1 177.1 -172.8 30.3 73.6 0 0.0 45 -1.9 0 0.0 0 0.0 6 19
44 44 ILE I t T - 0 0 -131.4 -174.4 -178.5 -50.5 49.3 125.3 0 0.0 49 -1.7 0 0.0 50 -1.4 7 29
48 48 THR T T T 3 TS+ 0 0 -72.9 84.9 180.0 22.9 128.2 118.7 0 0.0 0 0.0 0 0.0 0 0.0 8 27
49 49 GLY G T T 3 TS+ 0 0 130.3 25.2 179.3 135.5 89.3 58.1 47 -1.7 0 0.0 0 0.0 0 0.0 8 28
50 50 ASP D e < T - 0 0 -94.6 165.6 -179.3 -92.3 65.4 118.8 47 -1.4 52 -1.7 0 0.0 12 -1.5 8 34
51 51 LYS K E E BB + 11 0 -84.7 82.7 178.6 176.4 56.7 121.2 0 0.0 0 0.0 0 0.0 0 0.0 8 37
52 52 VAL V E E BB - 10 0 -79.0 152.8 160.1 -136.1 28.9 114.2 50 -1.7 10 -0.9 10 -0.8 0 0.0 12 48
53 53 THR T - 0 0 -94.8 161.1 179.7 -172.2 20.1 135.8 0 0.0 0 0.0 0 0.0 0 0.0 15 51
54 54 VAL V e - 0 0 -157.3 86.4 177.3 -166.5 3.1 126.9 0 0.0 8 -0.9 0 0.0 0 0.0 14 52
55 55 GLU E E E AA + 7 0 -78.2 138.6 -178.0 172.8 18.4 131.7 65 -2.9 0 0.0 0 0.0 0 0.0 13 47
56 56 LEU L E E AA - 6 0 -136.0 -179.3 -179.1 -98.1 26.2 134.9 6 -2.3 6 -1.0 0 0.0 0 0.0 13 39
57 57 THR T - 0 0 -100.4 161.1 163.8 -119.0 23.9 133.8 60 -0.7 0 0.0 0 0.0 0 0.0 11 28
58 58 PRO P S S S+ 0 0 -53.9 -43.5 -177.6 34.2 114.1 30.3 0 0.0 0 0.0 0 0.0 0 0.0 9 21
59 59 TYR Y S S S+ 0 0 -82.9 -49.4 -173.7 51.9 114.5 28.6 0 0.0 61 -0.9 0 0.0 0 0.0 4 15
60 60 ASP D t > T + 0 0 -102.7 83.3 -179.6 165.1 55.4 133.5 0 0.0 63 -0.9 0 0.0 57 -0.7 7 24
61 61 LEU L T T 3 T + 0 0 -73.7 -17.1 174.8 76.3 62.8 49.2 59 -0.9 0 0.0 0 0.0 0 0.0 9 31
62 62 SER S T e 3 TS+ 0 0 -69.0 -8.0 -177.4 52.3 95.1 58.5 0 0.0 32 -1.7 0 0.0 0 0.0 7 31
63 63 LYS K E E Be < T + 32 0 -122.7 -177.7 -179.3 164.1 58.2 126.2 60 -0.9 0 0.0 0 0.0 0 0.0 9 43
64 64 GLY G E E Be - 33 0 -177.3 177.0 172.7 -138.1 19.6 175.0 32 -1.4 34 -1.2 0 0.0 0 0.0 13 49
65 65 ARG R E E Be - 34 0 -162.7 115.9 165.9 -116.8 26.9 140.7 0 0.0 55 -2.9 0 0.0 67 -1.0 12 51
66 66 ILE I E E Be + 35 0 -39.0 91.0 179.2 167.3 43.6 108.9 34 -0.8 36 -1.7 0 0.0 0 0.0 14 50
67 67 VAL V - 0 0 -77.2 -87.3 172.4 -12.6 61.2 15.5 65 -1.0 0 0.0 0 0.0 0 0.0 10 33
68 68 PHE F S S S- 0 0 -117.0 145.9 -175.7 -89.0 88.0 159.8 0 0.0 70 -0.6 0 0.0 0 0.0 5 32
69 69 ARG R + 0 0 -60.6 99.9 -175.8 144.8 65.5 108.4 0 0.0 0 0.0 0 0.0 0 0.0 7 32
70 70 SER S 0 0 -110.8 -29.8 179.9 999.9 999.9 45.9 68 -0.6 0 0.0 0 0.0 0 0.0 5 24
71 71 ARG R 0 0 -82.9 999.9 999.9 999.9 999.9 129.1 0 0.0 0 0.0 0 0.0 0 0.0 7 26
1ah9-.pdb
1AH9 RIBOSOME BINDING MOL_ID: 1; MOL_ID: 1;
author author
Kabs/Sand S EE EEEEEE SSSEEEEEETTS EEEEEE SSGGGTT TT EE EE SS TTEEEE S Kabs/Sand
chirality ++---+----++-----+------+-+---+----+++++---+--++-+---+--++++++--+--+ chirality
bends S S SSS SSS SSSSSS SS SS S S bends
turns TTTT TTTTTTT TTTT TTTT turns
5-turns >5555< 5-turns
3-turns >33< >>3<< >33< >33< 3-turns
bridge-2 CCC*CC DDDDD eeee bridge-2
bridge-1 AA BB CCCCC DDDDD BB AA eeee bridge-1
sheets AA BBBBBB BBBBBB BBBBBB BB AA BBBB sheets
4-turns 4-turns
summary S EEeeEEEEEEeSSeEEEEEEeTteEEEEEEeSgGGGgTt tTTeEE eEE SStTeEEEE S summary
sequence AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR sequence
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