4GPD

the structure of lobster apo-d-glyceraldehyde-3-phosphate dehydrogenase at 3.0 angstroms resolution

• Total interactions analyzed: 6
• Total true interactions: 6
• Strongest Interaction:
  • Chains: 3-4
  • Int. Res.: 115
  • Norm. En. per Res.: -3.2675
• Hub Node: 1(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
1-2	-31.65	-29.8873	-270.39	-331.9272	118	24	7	11686	2	30	24
1-3	-20.0591	-4.3037	-28.0871	-52.4499	58	26	1	2820	0	21	14
1-4	-83.0949	-95.3748	-265.313	-443.7827	173	146	13	22186	8	36	24
2-3	-44.6308	-91.3235	-311.351	-447.3053	174	124	11	21807	7	36	24
2-4	0.0	-5.4708	-11.403	-16.8738	59	24	3	2827	0	22	15
3-4	-39.7656	-41.3042	-294.697	-375.7668	115	22	10	11751	3	30	24

Interface residues

• 1-2: ALA1761, ALA1762, ALA1791, ALA1792, ALA1891, ALA1892, ALA1981, ALA1982, ALA1991, ALA1992, ALA351, ALA352, ARG101, ARG102, ARG131, ARG132, ARG1931, ARG1932, ARG1961, ARG1962, ARG2301, ARG2302, ASN2011, ASN2012, ASN3121, ASN3122, ASP1851, ASP1852, ASP1911, ASP1912, ASP2351, ASP2352, ASP312, ASP461, ASP462, GLN1811, GLN1812, GLN2001, GLN2002, GLU3131, GLU3132, GLU371, GLU372, GLY1861, GLY1862, GLY1941, GLY1942, GLY1951, GLY1952, GLY1971, GLY1972, GLY501, GLY502, GLY91, GLY92, HIS491, HIS492, ILE2031, ILE2032, ILE2831, ILE2832, ILE341, ILE342, LEU141, LEU361, LEU362, LYS1821, LYS1822, LYS1901, LYS1902, LYS441, LYS442, MET391, MET392, MET421, MET422, PHE331, PHE332, PHE81, PHE82, PRO1871, PRO1872, PRO2321, PRO2322, PRO2341, PRO2342, PRO321, PRO322, SER1881, SER1882, SER471, SER472, THR1781, THR1782, THR1801, THR1802, THR1831, THR1832, THR2331, THR2332, THR481, THR482, TRP1921, TRP1922, TYR381, TYR382, TYR411, TYR412, TYR451, TYR452, VAL1771, VAL1772, VAL1841, VAL1842, VAL401, VAL402, VAL511, VAL512
• 1-3: ASP2751, ASP2753, ASP2761, ASP2763, ASP2811, ASP2813, ASP2851, ASP2853, ASP461, ASP463, GLN2001, GLN2003, GLU2741, GLU2743, GLY2841, GLY2843, GLY501, GLY503, ILE2831, ILE2833, ILE2901, ILE2903, LYS441, LYS443, LYS571, LYS573, MET421, MET423, PHE2821, PHE2823, PRO2341, PRO2343, SER2791, SER2793, SER2801, SER2803, SER471, SER473, THR2731, THR2733, THR481, THR483, TYR381, TYR383, TYR411, TYR413, TYR451, TYR453, VAL2771, VAL2773, VAL2781, VAL2783, VAL401, VAL403, VAL511, VAL513, VAL561, VAL563
• 1-4: ALA1761, ALA1764, ALA1981, ALA1991, ALA1994, ALA2091, ALA2094, ALA2101, ALA2104, ALA2281, ALA2284, ALA2931, ALA2934, ALA2951, ALA2954, ARG1931, ARG1934, ARG1961, ARG1964, ARG2301, ARG2304, ARG2441, ARG2444, ASN2011, ASN2014, ASP1854, ASP1911, ASP1914, ASP2351, ASP2354, ASP2401, ASP2404, ASP2751, ASP2754, ASP2761, ASP2764, ASP2811, ASP2814, ASP2921, ASP2924, GLN1814, GLN2001, GLN2004, GLN2981, GLN2984, GLU1681, GLU1684, GLU2741, GLU2744, GLY1691, GLY1694, GLY1941, GLY1944, GLY1951, GLY1954, GLY1971, GLY1974, GLY2221, GLY2224, GLY2261, GLY2264, GLY2461, GLY2464, GLY2961, GLY2964, HIS1751, HIS1754, ILE1661, ILE2021, ILE2024, ILE2031, ILE2034, ILE2831, ILE2834, ILE2901, ILE2971, ILE2974, LEU1701, LEU1704, LEU2241, LEU2244, LEU2411, LEU2414, LEU2451, LEU2454, LEU2991, LEU2994, LYS2231, LYS2234, LYS2941, LYS2944, LYS3011, LYS3014, LYS3051, LYS3054, MET1711, MET1714, MET2271, MET2274, PHE2291, PHE2294, PHE2821, PHE2824, PHE3031, PHE3034, PRO2041, PRO2044, PRO2321, PRO2324, PRO2341, PRO2344, SER1881, SER1884, SER2051, SER2054, SER2061, SER2064, SER2371, SER2374, SER2791, SER2794, SER2801, SER2804, SER3001, SER3004, SER3081, SER3084, THR1721, THR1724, THR1731, THR1734, THR2071, THR2074, THR2251, THR2254, THR2331, THR2334, THR2421, THR2424, THR2731, THR2734, THR3021, THR3024, TRP1921, TRP1924, TRP3091, TRP3094, VAL1671, VAL1674, VAL1741, VAL1744, VAL1771, VAL1774, VAL2311, VAL2314, VAL2361, VAL2364, VAL2381, VAL2384, VAL2391, VAL2394, VAL2431, VAL2434, VAL2771, VAL2774, VAL2781, VAL2784, VAL3041, VAL3044, VAL3061, VAL3064, VAL3071, VAL3074
• 2-3: ALA1762, ALA1763, ALA1982, ALA1992, ALA1993, ALA2092, ALA2093, ALA2102, ALA2103, ALA2282, ALA2283, ALA2932, ALA2933, ALA2952, ALA2953, ARG1932, ARG1933, ARG1962, ARG1963, ARG2302, ARG2303, ARG2442, ARG2443, ASN2012, ASN2013, ASP1852, ASP1912, ASP1913, ASP2352, ASP2353, ASP2402, ASP2403, ASP2752, ASP2753, ASP2762, ASP2763, ASP2812, ASP2813, ASP2922, ASP2923, GLN1813, GLN2002, GLN2003, GLN2982, GLN2983, GLU1682, GLU1683, GLU2742, GLU2743, GLY1692, GLY1693, GLY1942, GLY1943, GLY1952, GLY1953, GLY1972, GLY1973, GLY2083, GLY2222, GLY2223, GLY2262, GLY2263, GLY2462, GLY2463, GLY2962, GLY2963, HIS1752, HIS1753, ILE1663, ILE2022, ILE2023, ILE2032, ILE2033, ILE2832, ILE2833, ILE2972, ILE2973, LEU1702, LEU1703, LEU2242, LEU2243, LEU2412, LEU2413, LEU2452, LEU2453, LEU2992, LEU2993, LYS2232, LYS2233, LYS2942, LYS2943, LYS3012, LYS3013, LYS3052, LYS3053, MET1712, MET1713, MET2272, MET2273, PHE2292, PHE2293, PHE2822, PHE2823, PHE3032, PHE3033, PRO2042, PRO2043, PRO2322, PRO2323, PRO2342, PRO2343, SER1882, SER1883, SER2052, SER2053, SER2062, SER2063, SER2372, SER2373, SER2792, SER2793, SER2802, SER2803, SER3002, SER3003, SER3082, SER3083, THR1722, THR1723, THR1732, THR1733, THR2072, THR2073, THR2252, THR2253, THR2332, THR2333, THR2422, THR2423, THR2732, THR2733, THR3022, THR3023, TRP1922, TRP1923, TRP3092, TRP3093, TYR3102, VAL1672, VAL1673, VAL1742, VAL1743, VAL1772, VAL1773, VAL2312, VAL2313, VAL2362, VAL2363, VAL2382, VAL2383, VAL2392, VAL2393, VAL2432, VAL2433, VAL2772, VAL2773, VAL2782, VAL2783, VAL3042, VAL3043, VAL3062, VAL3063, VAL3072, VAL3073
• 2-4: ALA1992, ALA1994, ARG2874, ASP2752, ASP2754, ASP2762, ASP2764, ASP2812, ASP2814, ASP2852, ASP2854, ASP462, ASP464, GLN2002, GLN2004, GLU2744, GLY2842, GLY2844, GLY502, GLY504, HIS494, ILE2832, ILE2834, ILE2902, ILE2904, LYS442, LYS444, LYS572, LYS574, MET422, MET424, PHE2822, PHE2824, PRO2342, PRO2344, SER2792, SER2794, SER2802, SER2804, SER472, SER474, THR2732, THR2734, THR482, THR484, TYR382, TYR384, TYR412, TYR414, TYR452, TYR454, VAL2772, VAL2774, VAL2782, VAL2784, VAL402, VAL404, VAL512, VAL514
• 3-4: ALA1763, ALA1764, ALA1793, ALA1794, ALA1893, ALA1894, ALA1983, ALA1984, ALA1993, ALA1994, ALA353, ALA354, ARG103, ARG104, ARG133, ARG134, ARG174, ARG1933, ARG1934, ARG1963, ARG1964, ARG2303, ASN2013, ASN2014, ASN3123, ASN3124, ASP1853, ASP1854, ASP1913, ASP1914, ASP2353, ASP2354, ASP463, ASP464, GLN1813, GLN1814, GLN2003, GLN2004, GLU3133, GLU3134, GLU373, GLU374, GLY1863, GLY1864, GLY1943, GLY1944, GLY1953, GLY1954, GLY1973, GLY1974, GLY503, GLY504, GLY93, GLY94, HIS493, HIS494, ILE2033, ILE2034, ILE2833, ILE2834, ILE343, ILE344, LEU363, LEU364, LYS1823, LYS1824, LYS1903, LYS1904, LYS443, LYS444, MET393, MET394, MET423, MET424, PHE333, PHE334, PHE83, PHE84, PRO1873, PRO1874, PRO2323, PRO2324, PRO2343, PRO2344, SER1883, SER1884, SER473, SER474, THR1783, THR1784, THR1803, THR1804, THR1833, THR1834, THR2333, THR2334, THR483, THR484, TRP1923, TRP1924, TYR383, TYR384, TYR413, TYR414, TYR453, TYR454, VAL1773, VAL1774, VAL1843, VAL1844, VAL2313, VAL403, VAL404, VAL513, VAL514