4A8C

symmetrized cryo-em reconstruction of e. coli degq 12-mer in complex with a binding peptide

• Total interactions analyzed: 66
• Total true interactions: 24
• Strongest Interaction:
  • Chains: B-I
  • Int. Res.: 71
  • Norm. En. per Res.: -0.4944
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-4.7218	-4.7218	49	0	0	809	0	0	0
A-C	0.0	0.0	-5.3242	-5.3242	55	0	0	847	0	0	0
A-E	0.0	0.0	-24.3842	-24.3842	51	1	0	1724	0	0	0
A-L	0.0	0.0	-18.7426	-18.7426	62	7	0	2011	0	0	0
B-C	0.0	0.0	-6.0606	-6.0606	50	0	0	846	0	0	0
B-D	0.0	0.0	-13.2964	-13.2964	52	6	0	1715	0	0	0
B-I	0.0	0.0	-35.1028	-35.1028	71	24	0	2989	0	0	0
C-H	0.0	0.0	-31.4423	-31.4423	69	17	0	2905	0	0	0
C-J	0.0	0.0	-20.6865	-20.6865	62	6	0	1951	0	0	0
D-E	0.0	0.0	-4.689	-4.689	50	0	0	815	0	0	0
D-F	0.0	0.0	-5.184	-5.184	54	0	0	831	0	0	0
D-I	0.0	0.0	-19.1218	-19.1218	60	7	0	2014	0	0	0
E-F	0.0	0.0	-5.9855	-5.9855	50	0	0	838	0	0	0
E-L	0.0	0.0	-28.8748	-28.8748	70	27	0	2942	0	0	0
F-G	0.0	0.0	-14.132	-14.132	61	9	0	2032	0	0	0
F-K	0.0	0.0	-26.5714	-26.5714	68	25	0	2905	0	0	0
G-H	0.0	0.0	-4.6692	-4.6692	50	0	0	809	0	0	0
G-I	0.0	0.0	-5.2897	-5.2897	55	0	0	846	0	0	0
G-K	0.0	0.0	5.4781	5.4781	51	8	0	1768	0	0	0
H-I	0.0	0.0	-6.0053	-6.0053	50	0	0	840	0	0	0
H-J	0.0	0.0	-15.7016	-15.7016	53	6	0	1742	0	0	0
J-K	0.0	0.0	-4.7881	-4.7881	50	0	0	824	0	0	0
J-L	0.0	0.0	-5.359	-5.359	54	0	0	848	0	0	0
K-L	0.0	0.0	-6.0596	-6.0596	50	0	0	852	0	0	0

Interface residues

• A-B: ALA154A, ALA161B, ALA16A, ALA207B, ARG136B, ARG164B, ARG98A, ASN183A, ASN258B, ASP139B, ASP179B, ASP260B, ASP96A, GLN152A, GLN262B, GLU20A, GLU99A, GLY138B, GLY151A, GLY157B, GLY209A, GLY209B, GLY210A, GLY211A, GLY211B, GLY214B, GLY97A, ILE158B, ILE182A, LEU150A, LEU15A, LEU19A, LEU259B, PRO17A, PRO208B, SER14A, SER156A, SER160B, SER181A, SER212A, SER212B, THR153A, THR155A, THR178B, VAL137B, VAL159B, VAL213A, VAL213B, VAL261B
• A-C: ALA154C, ALA161A, ALA16C, ALA180C, ALA207A, ARG136A, ARG164A, ARG98C, ASN183C, ASN258A, ASP139A, ASP179A, ASP260A, ASP96C, GLN152C, GLN177A, GLN262A, GLU99C, GLY138A, GLY151C, GLY157A, GLY166A, GLY209A, GLY209C, GLY210C, GLY211A, GLY211C, GLY214A, GLY214C, GLY97C, ILE158A, ILE182C, ILE215A, LEU150C, LEU15C, LEU167A, LEU19C, LEU259A, PHE100C, PRO208A, SER14C, SER156C, SER160A, SER165A, SER181C, SER212A, SER212C, THR153C, THR155C, THR178A, VAL137A, VAL159A, VAL213A, VAL213C, VAL261A
• A-E: ALA277E, ALA279E, ALA283E, ALA379A, ALA413A, ARG320E, ARG392A, ARG428A, ASN321E, ASN391A, ASP285E, ASP393A, GLN378A, GLN415A, GLU269E, GLU326E, GLU421A, GLY280E, GLY284E, GLY322E, GLY373A, GLY380A, GLY389A, ILE286E, ILE388A, ILE411A, ILE412A, ILE416A, ILE423A, LEU318E, LEU319E, LEU325E, LEU381A, LEU414A, LEU425A, LEU426A, LYS278E, LYS282E, LYS323E, MET427A, PRO272E, PRO324E, SER268E, SER334E, SER422A, TYR424A, VAL267E, VAL270E, VAL281E, VAL390A, VAL417A
• A-L: ALA277A, ALA279A, ALA283A, ALA379L, ALA410L, ALA413L, ARG320A, ARG392L, ARG394L, ARG428L, ASN321A, ASN391L, ASP285A, ASP393L, GLN378L, GLN415L, GLU269A, GLU326A, GLU421L, GLY280A, GLY284A, GLY317A, GLY322A, GLY373L, GLY380L, GLY389L, ILE286A, ILE387L, ILE388L, ILE411L, ILE412L, ILE416L, ILE423L, LEU318A, LEU319A, LEU325A, LEU331A, LEU381L, LEU414L, LEU425L, LEU426L, LYS278A, LYS282A, LYS323A, MET427L, PHE266A, PRO272A, PRO324A, PRO409L, SER268A, SER276A, SER334A, SER422L, THR333A, THR335A, TYR424L, VAL267A, VAL270A, VAL281A, VAL327A, VAL390L, VAL417L
• B-C: ALA154B, ALA161C, ALA16B, ALA180B, ALA207C, ARG136C, ARG98B, ASN183B, ASN258C, ASP139C, ASP179C, ASP260C, ASP96B, GLN262C, GLU20B, GLU99B, GLY138C, GLY157C, GLY166C, GLY209B, GLY209C, GLY210B, GLY211B, GLY214B, GLY214C, GLY97B, ILE158C, ILE215C, LEU150B, LEU15B, LEU167C, LEU19B, LEU259C, MET18B, PHE100B, PHE140C, PRO17B, PRO208C, SER14B, SER156B, SER160C, SER181B, SER212B, THR153B, THR155B, THR178C, VAL137C, VAL213B, VAL213C, VAL261C
• B-D: ALA277B, ALA279B, ALA283B, ALA379D, ALA413D, ARG320B, ARG392D, ARG428D, ASN321B, ASN391D, ASP285B, ASP393D, GLN378D, GLN415D, GLU269B, GLU326B, GLU421D, GLY280B, GLY284B, GLY322B, GLY373D, GLY380D, GLY389D, ILE286B, ILE387D, ILE388D, ILE411D, ILE412D, ILE416D, ILE423D, LEU318B, LEU319B, LEU325B, LEU381D, LEU414D, LEU425D, LEU426D, LYS278B, LYS282B, LYS323B, MET427D, PRO272B, PRO324B, SER268B, SER334B, SER422D, TYR424D, VAL267B, VAL270B, VAL281B, VAL390D, VAL417D
• B-I: ALA277I, ALA279I, ALA283I, ALA376B, ALA377B, ALA379B, ALA410B, ALA413B, ARG320I, ARG392B, ARG394B, ARG418B, ARG428B, ASN321I, ASN391B, ASP285I, ASP393B, GLN378B, GLN382B, GLN415B, GLU269I, GLU326I, GLU421B, GLY273I, GLY280I, GLY284I, GLY317I, GLY322I, GLY373B, GLY380B, GLY389B, ILE286I, ILE287I, ILE387B, ILE388B, ILE411B, ILE412B, ILE416B, ILE423B, LEU271I, LEU316I, LEU318I, LEU319I, LEU325I, LEU331I, LEU381B, LEU414B, LEU425B, LEU426B, LYS278I, LYS282I, LYS323I, MET427B, PHE266I, PRO272I, PRO324I, SER268I, SER276I, SER334I, SER422B, THR288I, THR333I, THR335I, TYR424B, VAL267I, VAL270I, VAL281I, VAL327I, VAL390B, VAL395B, VAL417B
• C-H: ALA277C, ALA279C, ALA283C, ALA376H, ALA377H, ALA379H, ALA410H, ALA413H, ARG320C, ARG392H, ARG394H, ARG418H, ARG428H, ASN321C, ASN391H, ASP285C, ASP393H, GLN378H, GLN382H, GLN415H, GLU269C, GLU326C, GLU421H, GLY273C, GLY280C, GLY284C, GLY317C, GLY322C, GLY373H, GLY380H, GLY389H, ILE286C, ILE287C, ILE387H, ILE388H, ILE411H, ILE412H, ILE416H, ILE423H, LEU271C, LEU318C, LEU319C, LEU325C, LEU381H, LEU414H, LEU425H, LEU426H, LYS278C, LYS282C, LYS323C, MET427H, PHE266C, PRO272C, PRO324C, SER268C, SER276C, SER334C, SER422H, THR288C, THR333C, THR335C, TYR424H, VAL267C, VAL270C, VAL281C, VAL327C, VAL390H, VAL395H, VAL417H
• C-J: ALA277J, ALA279J, ALA283J, ALA379C, ALA410C, ALA413C, ARG320J, ARG392C, ARG394C, ARG428C, ASN321J, ASN391C, ASP285J, ASP393C, GLN378C, GLN415C, GLU269J, GLU326J, GLU421C, GLY280J, GLY284J, GLY317J, GLY322J, GLY373C, GLY380C, GLY389C, ILE286J, ILE387C, ILE388C, ILE411C, ILE412C, ILE416C, ILE423C, LEU318J, LEU319J, LEU325J, LEU331J, LEU381C, LEU414C, LEU425C, LEU426C, LYS278J, LYS282J, LYS323J, MET427C, PHE266J, PRO272J, PRO324J, PRO409C, SER268J, SER276J, SER334J, SER422C, THR333J, THR335J, TYR424C, VAL267J, VAL270J, VAL281J, VAL327J, VAL390C, VAL417C
• D-E: ALA154D, ALA161E, ALA16D, ALA207E, ARG136E, ARG164E, ARG98D, ASN183D, ASN258E, ASP139E, ASP179E, ASP260E, ASP96D, GLN152D, GLN262E, GLU20D, GLU99D, GLY138E, GLY151D, GLY157E, GLY209D, GLY209E, GLY210D, GLY211D, GLY211E, GLY214E, GLY97D, ILE158E, ILE182D, LEU150D, LEU15D, LEU19D, LEU259E, PHE140E, PRO17D, PRO208E, SER14D, SER156D, SER160E, SER181D, SER212D, SER212E, THR153D, THR155D, THR178E, VAL137E, VAL159E, VAL213D, VAL213E, VAL261E
• D-F: ALA154F, ALA161D, ALA16F, ALA180F, ALA207D, ARG136D, ARG164D, ARG98F, ASN183F, ASN258D, ASP139D, ASP179D, ASP260D, ASP96F, GLN152F, GLN262D, GLU99F, GLY138D, GLY151F, GLY157D, GLY166D, GLY209D, GLY209F, GLY210F, GLY211D, GLY211F, GLY214D, GLY214F, GLY97F, ILE158D, ILE182F, ILE215D, LEU150F, LEU15F, LEU167D, LEU19F, LEU259D, PHE100F, PRO208D, SER14F, SER156F, SER160D, SER165D, SER181F, SER212D, SER212F, THR153F, THR155F, THR178D, VAL137D, VAL159D, VAL213D, VAL213F, VAL261D
• D-I: ALA277D, ALA279D, ALA283D, ALA379I, ALA410I, ALA413I, ARG320D, ARG392I, ARG394I, ARG428I, ASN321D, ASN391I, ASP285D, ASP393I, GLN378I, GLN415I, GLU269D, GLU326D, GLU421I, GLY280D, GLY284D, GLY317D, GLY322D, GLY373I, GLY380I, GLY389I, ILE286D, ILE387I, ILE388I, ILE411I, ILE412I, ILE416I, ILE423I, LEU318D, LEU319D, LEU325D, LEU381I, LEU414I, LEU425I, LEU426I, LYS278D, LYS282D, LYS323D, MET427I, PHE266D, PRO272D, PRO324D, PRO409I, SER268D, SER276D, SER334D, SER422I, THR333D, TYR424I, VAL267D, VAL270D, VAL281D, VAL327D, VAL390I, VAL417I
• E-F: ALA154E, ALA161F, ALA16E, ALA180E, ALA207F, ARG136F, ARG98E, ASN183E, ASN258F, ASP139F, ASP179F, ASP260F, ASP96E, GLN262F, GLU20E, GLU99E, GLY138F, GLY157F, GLY166F, GLY209E, GLY209F, GLY210E, GLY211E, GLY214E, GLY214F, GLY97E, ILE158F, ILE215F, LEU150E, LEU15E, LEU167F, LEU19E, LEU259F, MET18E, PHE100E, PHE140F, PRO17E, PRO208F, SER14E, SER156E, SER160F, SER181E, SER212E, THR153E, THR155E, THR178F, VAL137F, VAL213E, VAL213F, VAL261F
• E-L: ALA277L, ALA279L, ALA283L, ALA376E, ALA377E, ALA379E, ALA410E, ALA413E, ARG320L, ARG392E, ARG394E, ARG418E, ARG428E, ASN321L, ASN391E, ASP285L, ASP393E, GLN378E, GLN382E, GLN415E, GLU269L, GLU326L, GLU421E, GLY273L, GLY280L, GLY284L, GLY317L, GLY322L, GLY373E, GLY380E, GLY389E, ILE286L, ILE287L, ILE387E, ILE388E, ILE411E, ILE412E, ILE416E, ILE423E, LEU271L, LEU316L, LEU318L, LEU319L, LEU325L, LEU381E, LEU414E, LEU425E, LEU426E, LYS278L, LYS282L, LYS323L, MET427E, PHE266L, PRO272L, PRO324L, SER268L, SER276L, SER334L, SER422E, THR288L, THR333L, THR335L, TYR424E, VAL267L, VAL270L, VAL281L, VAL327L, VAL390E, VAL395E, VAL417E
• F-G: ALA277G, ALA279G, ALA283G, ALA379F, ALA410F, ALA413F, ARG320G, ARG392F, ARG394F, ARG428F, ASN321G, ASN391F, ASP285G, ASP393F, GLN378F, GLN415F, GLU269G, GLU326G, GLU421F, GLY280G, GLY284G, GLY317G, GLY322G, GLY373F, GLY380F, GLY389F, ILE286G, ILE387F, ILE388F, ILE411F, ILE412F, ILE416F, ILE423F, LEU318G, LEU319G, LEU325G, LEU331G, LEU381F, LEU414F, LEU425F, LEU426F, LYS278G, LYS282G, LYS323G, MET427F, PHE266G, PRO272G, PRO324G, PRO409F, SER268G, SER276G, SER334G, SER422F, THR333G, TYR424F, VAL267G, VAL270G, VAL281G, VAL327G, VAL390F, VAL417F
• F-K: ALA277F, ALA279F, ALA283F, ALA376K, ALA377K, ALA379K, ALA410K, ALA413K, ARG320F, ARG392K, ARG394K, ARG418K, ARG428K, ASN321F, ASN391K, ASP285F, ASP393K, GLN378K, GLN382K, GLN415K, GLU269F, GLU326F, GLU421K, GLY273F, GLY280F, GLY284F, GLY317F, GLY322F, GLY373K, GLY380K, GLY389K, ILE286F, ILE287F, ILE387K, ILE388K, ILE411K, ILE412K, ILE416K, ILE423K, LEU271F, LEU318F, LEU319F, LEU325F, LEU381K, LEU414K, LEU425K, LEU426K, LYS278F, LYS282F, LYS323F, MET427K, PHE266F, PRO272F, PRO324F, SER268F, SER276F, SER334F, SER422K, THR333F, THR335F, TYR424K, VAL267F, VAL270F, VAL281F, VAL327F, VAL390K, VAL395K, VAL417K
• G-H: ALA154G, ALA161H, ALA16G, ALA207H, ARG136H, ARG164H, ARG98G, ASN183G, ASN258H, ASP139H, ASP179H, ASP260H, ASP96G, GLN152G, GLN262H, GLU20G, GLU99G, GLY138H, GLY151G, GLY157H, GLY209G, GLY209H, GLY210G, GLY211G, GLY211H, GLY214H, GLY97G, ILE158H, ILE182G, LEU150G, LEU15G, LEU19G, LEU259H, PHE140H, PRO17G, PRO208H, SER14G, SER156G, SER160H, SER181G, SER212G, SER212H, THR153G, THR155G, THR178H, VAL137H, VAL159H, VAL213G, VAL213H, VAL261H
• G-I: ALA154I, ALA161G, ALA16I, ALA180I, ALA207G, ARG136G, ARG164G, ARG98I, ASN183I, ASN258G, ASP139G, ASP179G, ASP260G, ASP96I, GLN152I, GLN177G, GLN262G, GLU99I, GLY138G, GLY151I, GLY157G, GLY166G, GLY209G, GLY209I, GLY210I, GLY211G, GLY211I, GLY214G, GLY214I, GLY97I, ILE158G, ILE182I, ILE215G, LEU150I, LEU15I, LEU167G, LEU19I, LEU259G, PHE100I, PRO208G, SER14I, SER156I, SER160G, SER165G, SER181I, SER212G, SER212I, THR153I, THR155I, THR178G, VAL137G, VAL159G, VAL213G, VAL213I, VAL261G
• G-K: ALA277K, ALA279K, ALA283K, ALA379G, ALA413G, ARG320K, ARG392G, ARG428G, ASN321K, ASN391G, ASP285K, ASP393G, GLN378G, GLN415G, GLU269K, GLU326K, GLU421G, GLY280K, GLY284K, GLY317K, GLY322K, GLY373G, GLY380G, GLY389G, ILE286K, ILE388G, ILE411G, ILE412G, ILE416G, ILE423G, LEU318K, LEU319K, LEU325K, LEU381G, LEU414G, LEU425G, LEU426G, LYS278K, LYS282K, LYS323K, MET427G, PRO324K, SER268K, SER334K, SER422G, TYR424G, VAL267K, VAL270K, VAL281K, VAL390G, VAL417G
• H-I: ALA154H, ALA161I, ALA16H, ALA180H, ALA207I, ARG136I, ARG98H, ASN183H, ASN258I, ASP139I, ASP179I, ASP260I, ASP96H, GLN262I, GLU20H, GLU99H, GLY138I, GLY157I, GLY166I, GLY209H, GLY209I, GLY210H, GLY211H, GLY214H, GLY214I, GLY97H, ILE158I, ILE215I, LEU150H, LEU15H, LEU167I, LEU19H, LEU259I, MET18H, PHE100H, PHE140I, PRO17H, PRO208I, SER14H, SER156H, SER160I, SER181H, SER212H, THR153H, THR155H, THR178I, VAL137I, VAL213H, VAL213I, VAL261I
• H-J: ALA277H, ALA279H, ALA283H, ALA379J, ALA413J, ARG320H, ARG392J, ARG428J, ASN321H, ASN391J, ASP285H, ASP393J, GLN378J, GLN415J, GLU269H, GLU326H, GLU421J, GLY280H, GLY284H, GLY317H, GLY322H, GLY373J, GLY380J, GLY389J, ILE286H, ILE387J, ILE388J, ILE411J, ILE412J, ILE416J, ILE423J, LEU318H, LEU319H, LEU325H, LEU381J, LEU414J, LEU425J, LEU426J, LYS278H, LYS282H, LYS323H, MET427J, PRO272H, PRO324H, SER268H, SER334H, SER422J, TYR424J, VAL267H, VAL270H, VAL281H, VAL390J, VAL417J
• J-K: ALA154J, ALA161K, ALA16J, ALA207K, ARG136K, ARG164K, ARG98J, ASN183J, ASN258K, ASP139K, ASP179K, ASP260K, ASP96J, GLN152J, GLN262K, GLU20J, GLU99J, GLY138K, GLY151J, GLY157K, GLY209J, GLY209K, GLY210J, GLY211J, GLY211K, GLY214K, GLY97J, ILE158K, ILE182J, LEU150J, LEU15J, LEU19J, LEU259K, PHE140K, PRO17J, PRO208K, SER14J, SER156J, SER160K, SER181J, SER212J, SER212K, THR153J, THR155J, THR178K, VAL137K, VAL159K, VAL213J, VAL213K, VAL261K
• J-L: ALA154L, ALA161J, ALA16L, ALA180L, ALA207J, ARG136J, ARG164J, ARG98L, ASN183L, ASN258J, ASP139J, ASP179J, ASP260J, ASP96L, GLN152L, GLN262J, GLU99L, GLY138J, GLY151L, GLY157J, GLY166J, GLY209J, GLY209L, GLY210L, GLY211J, GLY211L, GLY214J, GLY214L, GLY97L, ILE158J, ILE182L, ILE215J, LEU150L, LEU15L, LEU167J, LEU19L, LEU259J, PHE100L, PRO208J, SER14L, SER156L, SER160J, SER165J, SER181L, SER212J, SER212L, THR153L, THR155L, THR178J, VAL137J, VAL159J, VAL213J, VAL213L, VAL261J
• K-L: ALA154K, ALA161L, ALA16K, ALA180K, ALA207L, ARG136L, ARG98K, ASN183K, ASN258L, ASP139L, ASP179L, ASP260L, ASP96K, GLN262L, GLU20K, GLU99K, GLY138L, GLY157L, GLY166L, GLY209K, GLY209L, GLY210K, GLY211K, GLY214K, GLY214L, GLY97K, ILE158L, ILE215L, LEU150K, LEU15K, LEU167L, LEU19K, LEU259L, MET18K, PHE100K, PHE140L, PRO17K, PRO208L, SER14K, SER156K, SER160L, SER181K, SER212K, THR153K, THR155K, THR178L, VAL137L, VAL213K, VAL213L, VAL261L