4A8B

symmetrized cryo-em reconstruction of e. coli degq 12-mer in complex with lysozymes

• Total interactions analyzed: 153
• Total true interactions: 46
• Strongest Interaction:
  • Chains: F-O
  • Int. Res.: 10
  • Norm. En. per Res.: -0.4089
• Hub Node: A(5)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-2.2332	-2.2332	32	0	0	368	0	0	0
A-C	0.0	0.0	-2.6913	-2.6913	33	0	0	362	0	0	0
A-E	0.0	0.0	-20.3171	-20.3171	59	6	0	1718	0	0	0
A-L	0.0	0.0	-22.3777	-22.3777	58	2	0	1712	0	0	0
A-N	0.0	0.0	-0.0172	-0.0172	3	0	0	15	0	0	0
B-C	0.0	0.0	-2.0619	-2.0619	30	0	0	349	0	0	0
B-D	0.0	0.0	-19.2498	-19.2498	58	6	0	1712	0	0	0
B-I	0.0	0.0	-18.9669	-18.9669	53	4	0	1688	0	0	0
C-H	0.0	0.0	-19.1132	-19.1132	52	4	0	1701	0	0	0
C-J	0.0	0.0	-22.4887	-22.4887	59	2	0	1726	0	0	0
C-M	0.0	0.0	-0.1107	-0.1107	6	0	0	47	0	0	0
D-E	0.0	0.0	-2.2427	-2.2427	32	0	0	367	0	0	0
D-F	0.0	0.0	-2.6915	-2.6915	33	0	0	365	0	0	0
D-I	0.0	0.0	-22.2107	-22.2107	59	2	0	1725	0	0	0
D-N	0.0	0.0	-0.0009	-0.0009	2	0	0	3	0	0	0
E-F	0.0	0.0	-2.0139	-2.0139	31	0	0	342	0	0	0
E-L	0.0	0.0	-18.9203	-18.9203	53	4	0	1702	0	0	0
F-G	0.0	0.0	-22.3534	-22.3534	58	2	0	1728	0	0	0
F-K	0.0	0.0	-19.5497	-19.5497	54	4	0	1702	0	0	0
F-O	0.0	0.0	-4.0894	-4.0894	10	1	0	215	0	0	0
G-H	0.0	0.0	-2.253	-2.253	32	0	0	372	0	0	0
G-I	0.0	0.0	-2.7614	-2.7614	32	0	0	369	0	0	0
G-K	0.0	0.0	-19.6212	-19.6212	58	5	0	1710	0	0	0
G-P	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
H-I	0.0	0.0	-1.9979	-1.9979	31	0	0	349	0	0	0
H-J	0.0	0.0	-19.5225	-19.5225	58	6	0	1730	0	0	0
H-R	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
I-O	0.0	0.0	-0.2058	-0.2058	7	0	0	56	0	0	0
J-K	0.0	0.0	-2.295	-2.295	32	0	0	373	0	0	0
J-L	0.0	0.0	-2.704	-2.704	33	0	0	367	0	0	0
K-L	0.0	0.0	-1.9967	-1.9967	30	0	0	347	0	0	0
K-Q	0.0	0.0	-0.0108	-0.0108	2	0	0	8	0	0	0
L-M	0.0	0.0	-4.57	-4.57	12	2	0	243	0	0	0
M-N	0.0	0.0	-0.1452	-0.1452	8	0	0	52	0	0	0
M-P	0.0	0.0	-0.4406	-0.4406	9	0	0	100	0	0	0
M-Q	0.0	0.0	-0.9492	-0.9492	13	0	0	181	0	0	0
M-R	0.0	0.0	-1.1118	-1.1118	12	0	0	119	0	0	0
N-O	0.0	0.0	-0.5092	-0.5092	9	0	0	107	0	0	0
N-Q	0.0	0.0	-2.1378	-2.1378	16	0	0	291	0	0	0
N-R	0.0	0.0	1.3948	1.3948	24	4	0	356	0	0	0
O-P	0.0	0.0	-0.2407	-0.2407	7	0	0	57	0	0	0
O-Q	0.0	0.0	-1.2441	-1.2441	12	0	0	167	0	0	0
O-R	0.0	0.0	-0.4061	-0.4061	21	0	0	157	0	0	0
P-Q	0.0	0.0	0.5085	0.5085	12	6	0	146	0	0	0
P-R	0.0	0.0	-0.1122	-0.1122	6	0	0	43	0	0	0
Q-R	0.0	0.0	-0.0668	-0.0668	4	0	0	24	0	0	0

Interface residues

• A-B: ALA154A, ALA161B, ALA16A, ARG136B, ASP139B, ASP179B, GLY138B, GLY157B, GLY209A, GLY209B, GLY211A, GLY214B, ILE158B, LEU12A, LEU15A, LEU194B, LEU19A, PHE140B, PRO11A, PRO13A, PRO13B, PRO208B, SER14A, SER156A, SER160B, SER181A, SER212A, THR153A, THR155A, VAL137B, VAL213A, VAL213B
• A-C: ALA154C, ALA161A, ALA16C, ARG136A, ASP139A, ASP179A, GLU20C, GLY138A, GLY211C, GLY214A, ILE158A, LEU12A, LEU12C, LEU15C, LEU194A, LEU19C, PHE140A, PRO11A, PRO11C, PRO13A, PRO13C, PRO17C, PRO208A, SER14A, SER14C, SER156C, SER160A, SER181C, SER212C, THR153C, THR155C, VAL137A, VAL213A
• A-E: ALA277E, ALA279E, ALA283E, ALA379A, ALA410A, ALA413A, ARG320E, ARG392A, ARG394A, ASN258E, ASN321E, ASN391A, ASP252E, ASP260E, ASP285E, ASP393A, GLN378A, GLN415A, GLU269E, GLU326E, GLU421A, GLY280E, GLY284E, GLY322E, GLY380A, GLY389A, ILE253E, ILE286E, ILE387A, ILE388A, ILE411A, ILE412A, ILE416A, ILE423A, LEU259E, LEU318E, LEU319E, LEU325E, LEU381A, LEU414A, LEU425A, LEU426A, LYS278E, LYS282E, LYS323E, MET427A, PHE257E, PRO324E, PRO409A, SER268E, SER276E, SER422A, TYR424A, VAL267E, VAL270E, VAL281E, VAL327E, VAL390A, VAL417A
• A-L: ALA277A, ALA279A, ALA283A, ALA379L, ALA410L, ALA413L, ARG320A, ARG392L, ARG394L, ASN258A, ASN321A, ASN391L, ASP260A, ASP285A, ASP393L, GLN378L, GLN415L, GLU269A, GLU326A, GLU421L, GLY280A, GLY284A, GLY322A, GLY380L, GLY389L, ILE253A, ILE286A, ILE387L, ILE388L, ILE411L, ILE412L, ILE416L, ILE423L, LEU259A, LEU318A, LEU319A, LEU325A, LEU381L, LEU414L, LEU425L, LEU426L, LYS278A, LYS282A, LYS323A, MET427L, PHE257A, PRO272A, PRO324A, PRO409L, SER268A, SER276A, SER422L, TYR424L, VAL270A, VAL281A, VAL327A, VAL390L, VAL417L
• A-N: ASN19N, ASP18N, GLN59A
• B-C: ALA154B, ALA161C, ALA16B, ARG136C, ASP139C, ASP179C, GLY138C, GLY157C, GLY209B, GLY209C, GLY211B, GLY214C, ILE158C, LEU12B, LEU15B, LEU194C, LEU19B, PHE140C, PRO11B, PRO13C, PRO17B, SER14B, SER156B, SER160C, SER181B, SER212B, THR153B, THR155B, VAL137C, VAL213C
• B-D: ALA277B, ALA279B, ALA283B, ALA379D, ALA410D, ALA413D, ARG320B, ARG392D, ARG394D, ASN258B, ASN321B, ASN391D, ASP260B, ASP285B, ASP393D, GLN378D, GLN415D, GLU269B, GLU326B, GLU421D, GLY280B, GLY284B, GLY322B, GLY380D, GLY389D, ILE253B, ILE286B, ILE387D, ILE388D, ILE411D, ILE412D, ILE416D, ILE423D, LEU259B, LEU318B, LEU319B, LEU325B, LEU381D, LEU414D, LEU425D, LEU426D, LYS278B, LYS282B, LYS323B, MET427D, PHE257B, PRO324B, PRO409D, SER268B, SER276B, SER422D, TYR424D, VAL267B, VAL270B, VAL281B, VAL327B, VAL390D, VAL417D
• B-I: ALA277I, ALA279I, ALA283I, ALA379B, ALA410B, ALA413B, ARG320I, ARG392B, ARG394B, ASN321I, ASN391B, ASP260I, ASP285I, ASP393B, GLN378B, GLN415B, GLU269I, GLU326I, GLU421B, GLY280I, GLY284I, GLY322I, GLY380B, GLY389B, ILE253I, ILE388B, ILE411B, ILE412B, ILE416B, ILE423B, LEU259I, LEU318I, LEU319I, LEU325I, LEU381B, LEU414B, LEU425B, LEU426B, LYS278I, LYS282I, LYS323I, MET427B, PHE257I, PRO324I, PRO409B, SER268I, SER422B, TYR424B, VAL267I, VAL270I, VAL281I, VAL327I, VAL390B
• C-H: ALA277C, ALA279C, ALA283C, ALA379H, ALA410H, ALA413H, ARG320C, ARG392H, ARG394H, ASN321C, ASN391H, ASP260C, ASP285C, ASP393H, GLN378H, GLN415H, GLU269C, GLU326C, GLU421H, GLY280C, GLY284C, GLY322C, GLY380H, GLY389H, ILE253C, ILE411H, ILE412H, ILE416H, ILE423H, LEU259C, LEU318C, LEU319C, LEU325C, LEU381H, LEU414H, LEU425H, LEU426H, LYS278C, LYS282C, LYS323C, MET427H, PHE257C, PRO324C, PRO409H, SER268C, SER422H, TYR424H, VAL267C, VAL270C, VAL281C, VAL327C, VAL390H
• C-J: ALA277J, ALA279J, ALA283J, ALA379C, ALA410C, ALA413C, ARG320J, ARG392C, ARG394C, ASN258J, ASN321J, ASN391C, ASP252J, ASP260J, ASP285J, ASP393C, GLN378C, GLN415C, GLU269J, GLU326J, GLU421C, GLY280J, GLY284J, GLY322J, GLY380C, GLY389C, ILE253J, ILE286J, ILE387C, ILE388C, ILE411C, ILE412C, ILE416C, ILE423C, LEU259J, LEU318J, LEU319J, LEU325J, LEU381C, LEU414C, LEU425C, LEU426C, LYS278J, LYS282J, LYS323J, MET427C, PHE257J, PRO272J, PRO324J, PRO409C, SER268J, SER276J, SER422C, TYR424C, VAL270J, VAL281J, VAL327J, VAL390C, VAL417C
• C-M: ALA10M, ALA11M, ALA35C, GLN59C, GLU7M, PRO60C
• D-E: ALA154D, ALA161E, ALA16D, ARG136E, ASP139E, ASP179E, GLY138E, GLY157E, GLY209D, GLY209E, GLY211D, GLY214E, ILE158E, LEU12D, LEU15D, LEU194E, LEU19D, PHE140E, PRO11D, PRO13D, PRO13E, PRO208E, SER14D, SER156D, SER160E, SER181D, SER212D, THR153D, THR155D, VAL137E, VAL213D, VAL213E
• D-F: ALA154F, ALA161D, ALA16F, ARG136D, ASP139D, ASP179D, GLU20F, GLY138D, GLY211F, GLY214D, ILE158D, LEU12D, LEU12F, LEU15F, LEU194D, LEU19F, PHE140D, PRO11D, PRO11F, PRO13D, PRO13F, PRO17F, PRO208D, SER14D, SER14F, SER156F, SER160D, SER181F, SER212F, THR153F, THR155F, VAL137D, VAL213D
• D-I: ALA277D, ALA279D, ALA283D, ALA379I, ALA410I, ALA413I, ARG320D, ARG392I, ARG394I, ASN258D, ASN321D, ASN391I, ASP252D, ASP260D, ASP285D, ASP393I, GLN378I, GLN415I, GLU269D, GLU326D, GLU421I, GLY280D, GLY284D, GLY322D, GLY380I, GLY389I, ILE253D, ILE286D, ILE387I, ILE388I, ILE411I, ILE412I, ILE416I, ILE423I, LEU259D, LEU318D, LEU319D, LEU325D, LEU381I, LEU414I, LEU425I, LEU426I, LYS278D, LYS282D, LYS323D, MET427I, PHE257D, PRO272D, PRO324D, PRO409I, SER268D, SER276D, SER422I, TYR424I, VAL270D, VAL281D, VAL327D, VAL390I, VAL417I
• D-N: ARG5N, GLN59D
• E-F: ALA154E, ALA161F, ALA16E, ARG136F, ASP139F, ASP179F, GLY138F, GLY157F, GLY209E, GLY209F, GLY211E, GLY214F, ILE158F, LEU12E, LEU12F, LEU15E, LEU194F, LEU19E, PHE140F, PRO11E, PRO13F, PRO17E, SER14E, SER156E, SER160F, SER181E, SER212E, THR153E, THR155E, VAL137F, VAL213F
• E-L: ALA277L, ALA279L, ALA283L, ALA379E, ALA410E, ALA413E, ARG320L, ARG392E, ARG394E, ASN321L, ASN391E, ASP260L, ASP285L, ASP393E, GLN378E, GLN415E, GLU269L, GLU326L, GLU421E, GLY280L, GLY284L, GLY322L, GLY380E, GLY389E, ILE253L, ILE388E, ILE411E, ILE412E, ILE416E, ILE423E, LEU259L, LEU318L, LEU319L, LEU325L, LEU381E, LEU414E, LEU425E, LEU426E, LYS278L, LYS282L, LYS323L, MET427E, PHE257L, PRO324L, PRO409E, SER268L, SER422E, TYR424E, VAL267L, VAL270L, VAL281L, VAL327L, VAL390E
• F-G: ALA277G, ALA279G, ALA283G, ALA379F, ALA410F, ALA413F, ARG320G, ARG392F, ARG394F, ASN258G, ASN321G, ASN391F, ASP252G, ASP260G, ASP285G, ASP393F, GLN378F, GLN415F, GLU269G, GLU326G, GLU421F, GLY280G, GLY284G, GLY322G, GLY380F, GLY389F, ILE253G, ILE286G, ILE387F, ILE388F, ILE411F, ILE412F, ILE416F, ILE423F, LEU259G, LEU318G, LEU319G, LEU325G, LEU381F, LEU414F, LEU425F, LEU426F, LYS278G, LYS282G, LYS323G, MET427F, PHE257G, PRO324G, PRO409F, SER268G, SER276G, SER422F, TYR424F, VAL270G, VAL281G, VAL327G, VAL390F, VAL417F
• F-K: ALA277F, ALA279F, ALA283F, ALA379K, ALA410K, ALA413K, ARG320F, ARG392K, ARG394K, ASN258F, ASN321F, ASN391K, ASP260F, ASP285F, ASP393K, GLN378K, GLN415K, GLU269F, GLU326F, GLU421K, GLY280F, GLY284F, GLY322F, GLY380K, GLY389K, ILE253F, ILE388K, ILE411K, ILE412K, ILE416K, ILE423K, LEU259F, LEU318F, LEU319F, LEU325F, LEU381K, LEU414K, LEU425K, LEU426K, LYS278F, LYS282F, LYS323F, MET427K, PHE257F, PRO324F, PRO409K, SER268F, SER422K, TYR424K, VAL267F, VAL270F, VAL281F, VAL327F, VAL390K
• F-O: ALA35F, ASP119O, GLN121O, GLN59F, GLY117O, LYS116O, PRO60F, THR118O, THR34F, VAL120O
• G-H: ALA154G, ALA161H, ALA16G, ARG136H, ASP139H, ASP179H, GLY138H, GLY157H, GLY209G, GLY209H, GLY211G, GLY214H, ILE158H, LEU12G, LEU15G, LEU194H, LEU19G, PHE140H, PRO11G, PRO13G, PRO13H, PRO208H, SER14G, SER156G, SER160H, SER181G, SER212G, THR153G, THR155G, VAL137H, VAL213G, VAL213H
• G-I: ALA154I, ALA161G, ALA16I, ARG136G, ASP139G, ASP179G, GLU20I, GLY138G, GLY211I, GLY214G, ILE158G, LEU12G, LEU12I, LEU15I, LEU194G, LEU19I, PHE140G, PRO11G, PRO11I, PRO13G, PRO13I, PRO17I, PRO208G, SER14I, SER156I, SER160G, SER181I, SER212I, THR153I, THR155I, VAL137G, VAL213G
• G-K: ALA277K, ALA279K, ALA283K, ALA379G, ALA410G, ALA413G, ARG320K, ARG392G, ARG394G, ASN258K, ASN321K, ASN391G, ASP260K, ASP285K, ASP393G, GLN378G, GLN415G, GLU269K, GLU326K, GLU421G, GLY280K, GLY284K, GLY322K, GLY380G, GLY389G, ILE253K, ILE286K, ILE387G, ILE388G, ILE411G, ILE412G, ILE416G, ILE423G, LEU259K, LEU318K, LEU319K, LEU325K, LEU381G, LEU414G, LEU425G, LEU426G, LYS278K, LYS282K, LYS323K, MET427G, PHE257K, PRO324K, PRO409G, SER268K, SER276K, SER422G, TYR424G, VAL267K, VAL270K, VAL281K, VAL327K, VAL390G, VAL417G
• G-P: ASP18P, GLN59G
• H-I: ALA154H, ALA161I, ALA16H, ARG136I, ASP139I, ASP179I, GLY138I, GLY157I, GLY209H, GLY209I, GLY211H, GLY214I, ILE158I, LEU12H, LEU12I, LEU15H, LEU194I, LEU19H, PHE140I, PRO11H, PRO13I, PRO17H, SER14H, SER156H, SER160I, SER181H, SER212H, THR153H, THR155H, VAL137I, VAL213I
• H-J: ALA277H, ALA279H, ALA283H, ALA379J, ALA410J, ALA413J, ARG320H, ARG392J, ARG394J, ASN258H, ASN321H, ASN391J, ASP260H, ASP285H, ASP393J, GLN378J, GLN415J, GLU269H, GLU326H, GLU421J, GLY280H, GLY284H, GLY322H, GLY380J, GLY389J, ILE253H, ILE286H, ILE387J, ILE388J, ILE411J, ILE412J, ILE416J, ILE423J, LEU259H, LEU318H, LEU319H, LEU325H, LEU381J, LEU414J, LEU425J, LEU426J, LYS278H, LYS282H, LYS323H, MET427J, PHE257H, PRO324H, PRO409J, SER268H, SER276H, SER422J, TYR424J, VAL267H, VAL270H, VAL281H, VAL327H, VAL390J, VAL417J
• H-R: ASP18R, GLN59H
• I-O: ALA10O, ALA11O, ALA35I, CYS6O, GLN59I, GLU7O, PRO60I
• J-K: ALA154J, ALA161K, ALA16J, ARG136K, ASP139K, ASP179K, GLY138K, GLY157K, GLY209J, GLY209K, GLY211J, GLY214K, ILE158K, LEU12J, LEU15J, LEU194K, LEU19J, PHE140K, PRO11J, PRO13J, PRO13K, PRO208K, SER14J, SER156J, SER160K, SER181J, SER212J, THR153J, THR155J, VAL137K, VAL213J, VAL213K
• J-L: ALA154L, ALA161J, ALA16L, ARG136J, ASP139J, ASP179J, GLU20L, GLY138J, GLY211L, GLY214J, ILE158J, LEU12J, LEU12L, LEU15L, LEU194J, LEU19L, PHE140J, PRO11J, PRO11L, PRO13J, PRO13L, PRO17L, PRO208J, SER14J, SER14L, SER156L, SER160J, SER181L, SER212L, THR153L, THR155L, VAL137J, VAL213J
• K-L: ALA154K, ALA161L, ALA16K, ARG136L, ASP139L, ASP179L, GLY138L, GLY157L, GLY209K, GLY209L, GLY211K, GLY214L, ILE158L, LEU12K, LEU12L, LEU15K, LEU19K, PHE140L, PRO11K, PRO13L, PRO17K, SER14K, SER156K, SER160L, SER181K, SER212K, THR153K, THR155K, VAL137L, VAL213L
• K-Q: ASN19Q, GLN59K
• L-M: ALA122M, ALA35L, ASP119M, GLN121M, GLN59L, GLY117M, LYS116M, PHE61L, PRO60L, THR118M, THR34L, VAL120M
• M-N: ARG68M, ARG73N, ASN74N, GLY49M, GLY71N, PRO70M, SER72N, THR69M
• M-P: ARG68P, ARG73M, ASN74M, GLY71M, GLY71P, LEU75M, PRO70P, SER72M, THR69P
• M-Q: ARG61M, ARG68Q, ASP48M, ASP66Q, GLY49M, GLY67Q, GLY71M, GLY71Q, PRO70M, PRO70Q, SER72M, THR69M, THR69Q
• M-R: ARG68M, ASP48R, ASP66M, GLY49R, GLY67M, GLY71M, GLY71R, PRO70M, PRO70R, SER50R, THR47R, THR69M
• N-O: ARG68N, ARG73O, ASN74O, GLY71N, GLY71O, LEU75O, PRO70N, SER72O, THR69N
• N-Q: ARG45Q, ARG68Q, ASN46Q, ASP48N, ASP48Q, GLY49N, GLY49Q, GLY71N, PRO70N, PRO70Q, SER50Q, SER72N, THR47N, THR47Q, THR69N, THR69Q
• N-R: ARG45R, ARG68N, ARG68R, ARG73N, ASN46R, ASN65N, ASN74N, ASN77N, ASP48R, ASP66N, ASP66R, GLY49R, GLY67N, GLY67R, GLY71N, ILE78N, PRO70N, PRO70R, PRO79N, SER50R, SER72N, THR47R, THR69N, THR69R
• O-P: ARG68O, ARG73P, ASN74P, GLY71P, PRO70O, SER72P, THR69O
• O-Q: ARG73O, ASP48Q, GLY49Q, GLY71O, GLY71Q, PRO70O, PRO70Q, SER50Q, SER72O, SER72Q, THR69O, THR69Q
• O-R: ARG73O, ARG73R, ASN65O, ASN65R, ASN74O, ASN74R, ASN77O, ASN77R, ASP66R, CYS64O, GLY67O, GLY67R, GLY71O, GLY71R, ILE78O, ILE78R, PRO70O, PRO70R, PRO79O, PRO79R, SER72R
• P-Q: ARG73P, ARG73Q, ASN74Q, ASN77Q, ASP48P, GLY71P, GLY71Q, PRO70P, PRO70Q, SER72P, SER72Q, THR69Q
• P-R: ARG73R, GLY67P, GLY71P, GLY71R, PRO70P, TRP62R
• Q-R: GLY71Q, GLY71R, PRO70Q, PRO70R