4A8A

asymmetric cryo-em reconstruction of e. coli degq 12-mer in complex with lysozyme

• Total interactions analyzed: 78
• Total true interactions: 27
• Strongest Interaction:
  • Chains: F-K
  • Int. Res.: 49
  • Norm. En. per Res.: -0.5158
• Hub Node: A(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	0.0	-3.1045	-3.1045	42	0	0	492	0	0	0
A-C	0.0	0.0	-1.5812	-1.5812	34	0	0	379	0	0	0
A-E	0.0	0.0	-20.9012	-20.9012	57	8	0	1777	0	0	0
A-L	0.0	0.0	-14.0195	-14.0195	66	12	0	2655	0	0	0
B-C	0.0	0.0	-0.8004	-0.8004	12	0	0	151	0	0	0
B-D	0.0	0.0	-18.0674	-18.0674	57	5	0	1825	0	0	0
B-I	0.0	0.0	-19.22	-19.22	51	1	0	1620	0	0	0
C-H	0.0	0.0	-21.5055	-21.5055	48	1	0	1620	0	0	0
C-J	0.0	0.0	11.2594	11.2594	64	14	0	2695	0	0	0
D-E	0.0	0.0	-1.7917	-1.7917	33	0	0	281	0	0	0
D-F	0.0	0.0	-4.5904	-4.5904	50	0	0	752	0	0	0
D-I	0.0	0.0	4.6136	4.6136	65	10	0	2639	0	0	0
E-F	0.0	0.0	-6.2531	-6.2531	50	0	0	715	0	0	0
E-L	0.0	0.0	-23.2698	-23.2698	50	0	0	1661	0	0	0
F-G	0.0	0.0	1.3862	1.3862	65	11	0	2682	0	0	0
F-K	0.0	0.0	-25.2732	-25.2732	49	2	0	1701	0	0	0
G-H	0.0	0.0	-1.553	-1.553	25	0	0	263	0	0	0
G-I	0.0	0.0	-0.6831	-0.6831	18	0	0	119	0	0	0
G-K	0.0	0.0	-19.9743	-19.9743	60	6	0	1787	0	0	0
G-M	0.0	0.0	-2.8981	-2.8981	31	0	0	446	0	0	0
H-I	0.0	0.0	-2.7563	-2.7563	34	0	0	418	0	0	0
H-J	0.0	0.0	-13.5139	-13.5139	56	9	0	1919	0	0	0
H-M	0.0	0.0	-1.5235	-1.5235	14	0	0	238	0	0	0
J-K	0.0	0.0	-5.1993	-5.1993	50	0	0	629	0	0	0
J-L	0.0	0.0	-5.5626	-5.5626	44	0	0	701	0	0	0
J-M	0.0	0.0	-2.7106	-2.7106	25	0	0	358	0	0	0
K-L	0.0	0.0	-5.8494	-5.8494	46	0	0	757	0	0	0

Interface residues

• A-B: ALA154A, ALA161B, ALA16A, ALA207B, ARG136B, ASN183A, ASP139B, ASP179B, GLN152A, GLU20A, GLY138B, GLY151A, GLY157B, GLY209A, GLY209B, GLY210A, GLY211A, GLY214B, ILE158B, ILE182A, ILE215B, LEU12A, LEU12B, LEU15A, LEU19A, PHE140A, PRO11B, PRO13A, PRO147A, PRO17A, PRO208B, SER14A, SER156A, SER160B, SER181A, SER212A, SER212B, THR153A, THR155A, VAL137B, VAL159B, VAL213B
• A-C: ALA154C, ALA161A, ALA16C, ALA207A, ARG136A, ASP139A, ASP179A, ASP96C, GLN262A, GLU99C, GLY138A, GLY209A, GLY209C, GLY210C, GLY211C, GLY214A, GLY97C, LEU12A, LEU15C, LEU19C, LYS255A, PRO11C, PRO13A, PRO208A, SER14C, SER156C, SER160A, SER181C, SER212C, THR153C, THR155C, VAL137A, VAL213A, VAL213C
• A-E: ALA251E, ALA277E, ALA279E, ALA283E, ALA379A, ALA410A, ALA413A, ARG320E, ARG392A, ARG394A, ARG428A, ASN321E, ASN391A, ASP285E, ASP393A, GLN378A, GLN415A, GLU269E, GLU326E, GLU421A, GLY280E, GLY284E, GLY317E, GLY322E, GLY380A, GLY389A, ILE286E, ILE387A, ILE388A, ILE411A, ILE412A, ILE416A, ILE423A, LEU318E, LEU319E, LEU325E, LEU381A, LEU414A, LEU425A, LEU426A, LYS278E, LYS282E, LYS323E, MET427A, PRO324E, PRO409A, SER250E, SER268E, SER276E, SER422A, TYR424A, VAL267E, VAL270E, VAL281E, VAL327E, VAL390A, VAL417A
• A-L: ALA277A, ALA279A, ALA283A, ALA377L, ALA379L, ALA410L, ALA413L, ARG320A, ARG392L, ARG394L, ARG418L, ARG428L, ASN258A, ASN321A, ASN391L, ASP285A, ASP393L, GLN378L, GLN382L, GLN415L, GLU269A, GLU326A, GLU421L, GLY273A, GLY280A, GLY284A, GLY317A, GLY322A, GLY380L, GLY389L, ILE286A, ILE287A, ILE387L, ILE388L, ILE411L, ILE412L, ILE416L, ILE423L, LEU259A, LEU271A, LEU318A, LEU319A, LEU325A, LEU381L, LEU414L, LEU425L, LEU426L, LYS278A, LYS282A, LYS323A, MET427L, PHE257A, PHE266A, PRO272A, PRO324A, SER268A, SER276A, SER422L, TYR424L, VAL267A, VAL270A, VAL281A, VAL327A, VAL390L, VAL395L, VAL417L
• B-C: ALA154B, ALA16B, ASP139C, GLY138C, LEU12C, LEU15B, PRO11B, PRO11C, PRO17B, SER14B, SER160C, VAL137C
• B-D: ALA277B, ALA279B, ALA283B, ALA379D, ALA410D, ALA413D, ARG320B, ARG392D, ARG394D, ARG428D, ASN321B, ASN391D, ASP285B, ASP393D, GLN378D, GLN415D, GLU269B, GLU326B, GLU421D, GLY280B, GLY284B, GLY317B, GLY322B, GLY380D, GLY389D, ILE286B, ILE387D, ILE388D, ILE411D, ILE412D, ILE416D, ILE423D, LEU318B, LEU319B, LEU325B, LEU381D, LEU414D, LEU425D, LEU426D, LYS278B, LYS282B, LYS323B, MET427D, PHE266B, PRO272B, PRO324B, PRO409D, SER268B, SER276B, SER422D, TYR424D, VAL267B, VAL270B, VAL281B, VAL327B, VAL390D, VAL417D
• B-I: ALA256I, ALA277I, ALA279I, ALA283I, ALA379B, ALA413B, ARG320I, ARG392B, ARG428B, ASN321I, ASN391B, ASP285I, ASP393B, GLN378B, GLN415B, GLU269I, GLU326I, GLU421B, GLY280I, GLY284I, GLY322I, GLY380B, GLY389B, ILE387B, ILE388B, ILE411B, ILE412B, ILE416B, ILE423B, LEU318I, LEU319I, LEU325I, LEU381B, LEU414B, LEU425B, LEU426B, LYS278I, LYS282I, LYS323I, MET427B, PHE257I, PRO272I, PRO324I, SER268I, SER422B, TYR424B, VAL267I, VAL270I, VAL281I, VAL390B, VAL417B
• C-H: ALA277C, ALA279C, ALA283C, ALA379H, ALA413H, ARG320C, ARG392H, ARG428H, ASN321C, ASN391H, ASP285C, ASP393H, GLN378H, GLN415H, GLU269C, GLU326C, GLU421H, GLY280C, GLY284C, GLY322C, GLY380H, GLY389H, ILE388H, ILE411H, ILE412H, ILE416H, ILE423H, LEU318C, LEU319C, LEU325C, LEU381H, LEU414H, LEU425H, LEU426H, LYS278C, LYS282C, LYS323C, MET427H, PRO272C, PRO324C, SER268C, SER422H, TYR424H, VAL267C, VAL270C, VAL281C, VAL390H, VAL417H
• C-J: ALA277J, ALA279J, ALA283J, ALA376C, ALA377C, ALA379C, ALA410C, ALA413C, ARG320J, ARG392C, ARG394C, ARG418C, ARG428C, ASN321J, ASN391C, ASP285J, ASP393C, GLN378C, GLN382C, GLN415C, GLU269J, GLU326J, GLU421C, GLY273J, GLY280J, GLY284J, GLY317J, GLY322J, GLY380C, GLY389C, ILE286J, ILE287J, ILE387C, ILE388C, ILE411C, ILE412C, ILE416C, ILE423C, LEU271J, LEU318J, LEU319J, LEU325J, LEU381C, LEU414C, LEU425C, LEU426C, LYS278J, LYS282J, LYS323J, MET427C, PHE266J, PRO272J, PRO324J, SER268J, SER276J, SER422C, TYR424C, VAL267J, VAL270J, VAL281J, VAL327J, VAL390C, VAL395C, VAL417C
• D-E: ALA154D, ALA161E, ALA16D, ALA256E, ARG136E, ARG98D, ASN258E, ASN95D, ASP139E, ASP260E, ASP96D, GLN262E, GLU99D, GLY138E, GLY149D, GLY151D, GLY211D, GLY97D, LEU12D, LEU150D, LEU15D, LEU259E, PHE140E, PHE257E, PRO11D, PRO13D, SER14D, SER160E, THR153D, THR155D, VAL137E, VAL213E, VAL261E
• D-F: ALA154F, ALA161D, ALA16F, ALA207D, ARG136D, ARG98F, ASN183F, ASN258D, ASP139D, ASP179D, ASP260D, ASP96F, GLN262D, GLU20F, GLU99F, GLY138D, GLY157D, GLY209D, GLY209F, GLY210F, GLY211F, GLY214D, GLY97F, ILE158D, LEU12D, LEU12F, LEU150F, LEU15F, LEU167D, LEU194D, LEU19F, LEU259D, LYS255D, PHE140D, PRO11D, PRO11F, PRO13D, PRO17F, PRO208D, SER14F, SER156F, SER160D, SER181F, SER212F, THR153F, THR155F, VAL137D, VAL213D, VAL213F, VAL261D
• D-I: ALA277D, ALA279D, ALA283D, ALA376I, ALA377I, ALA379I, ALA410I, ALA413I, ARG320D, ARG392I, ARG394I, ARG418I, ARG428I, ASN321D, ASN391I, ASP285D, ASP393I, GLN378I, GLN382I, GLN415I, GLU269D, GLU326D, GLU421I, GLY273D, GLY280D, GLY284D, GLY317D, GLY322D, GLY380I, GLY389I, ILE286D, ILE287D, ILE387I, ILE388I, ILE411I, ILE412I, ILE416I, ILE423I, LEU271D, LEU318D, LEU319D, LEU325D, LEU381I, LEU414I, LEU425I, LEU426I, LYS278D, LYS282D, LYS323D, MET427I, PHE266D, PRO272D, PRO324D, SER250D, SER268D, SER276D, SER422I, TYR424I, VAL267D, VAL270D, VAL281D, VAL327D, VAL390I, VAL395I, VAL417I
• E-F: ALA154E, ALA161F, ALA16E, ALA207F, ALA251F, ALA254F, ALA256F, ARG136F, ARG98E, ASN258F, ASP139F, ASP179F, ASP260F, ASP96E, GLN93E, GLU99E, GLY138F, GLY209E, GLY209F, GLY210E, GLY211E, GLY214E, GLY214F, GLY97E, ILE158F, ILE215F, LEU12E, LEU12F, LEU150E, LEU15E, LEU194F, LEU259F, LYS255F, PHE140F, PHE257F, PRO11E, PRO13E, PRO13F, PRO17E, PRO208F, SER14E, SER156E, SER160F, SER181E, SER212E, THR153E, THR155E, VAL137F, VAL213E, VAL213F
• E-L: ALA256L, ALA277L, ALA279L, ALA283L, ALA379E, ALA413E, ARG320L, ARG392E, ARG428E, ASN321L, ASN391E, ASP285L, ASP393E, GLN378E, GLN415E, GLU269L, GLU326L, GLU421E, GLY280L, GLY284L, GLY322L, GLY380E, GLY389E, ILE388E, ILE411E, ILE412E, ILE416E, ILE423E, LEU318L, LEU319L, LEU325L, LEU381E, LEU414E, LEU425E, LEU426E, LYS278L, LYS282L, LYS323L, MET427E, PHE257L, PRO272L, PRO324L, SER268L, SER422E, TYR424E, VAL267L, VAL270L, VAL281L, VAL390E, VAL417E
• F-G: ALA277G, ALA279G, ALA283G, ALA376F, ALA377F, ALA379F, ALA410F, ALA413F, ARG320G, ARG392F, ARG394F, ARG418F, ARG428F, ASN321G, ASN391F, ASP285G, ASP393F, GLN378F, GLN382F, GLN415F, GLU269G, GLU326G, GLU421F, GLY273G, GLY280G, GLY284G, GLY317G, GLY322G, GLY380F, GLY389F, ILE286G, ILE287G, ILE387F, ILE388F, ILE411F, ILE412F, ILE416F, ILE423F, LEU259G, LEU271G, LEU318G, LEU319G, LEU325G, LEU381F, LEU414F, LEU425F, LEU426F, LYS278G, LYS282G, LYS323G, MET427F, PHE266G, PRO272G, PRO324G, SER268G, SER276G, SER422F, TYR424F, VAL267G, VAL270G, VAL281G, VAL327G, VAL390F, VAL395F, VAL417F
• F-K: ALA277F, ALA279F, ALA283F, ALA379K, ALA413K, ARG320F, ARG392K, ARG428K, ASN321F, ASN391K, ASP285F, GLN378K, GLN415K, GLU269F, GLU326F, GLU421K, GLY280F, GLY284F, GLY317F, GLY322F, GLY380K, GLY389K, ILE286F, ILE388K, ILE411K, ILE412K, ILE416K, ILE423K, LEU318F, LEU319F, LEU325F, LEU381K, LEU414K, LEU425K, LEU426K, LYS278F, LYS282F, LYS323F, MET427K, PRO272F, PRO324F, SER268F, SER422K, TYR424K, VAL267F, VAL270F, VAL281F, VAL390K, VAL417K
• G-H: ALA154G, ALA161H, ALA16G, ALA254H, ARG136H, ARG98G, ASN258H, ASP139H, ASP96G, GLN262H, GLU99G, GLY138H, GLY97G, LEU15G, LEU259H, LYS255H, PRO13G, SER14G, SER156G, SER160H, SER212G, THR153G, THR155G, VAL137H, VAL213H
• G-I: ALA154I, ALA16I, ARG136G, ASP139G, GLN262G, GLY138G, GLY97I, LEU12I, LEU15I, LEU19I, PRO11G, PRO17I, SER14I, SER160G, SER212I, THR155I, VAL137G, VAL213G
• G-K: ALA256K, ALA277K, ALA279K, ALA283K, ALA379G, ALA410G, ALA413G, ARG320K, ARG392G, ARG394G, ARG428G, ASN321K, ASN391G, ASP285K, ASP393G, GLN378G, GLN415G, GLU269K, GLU326K, GLU421G, GLY280K, GLY284K, GLY317K, GLY322K, GLY380G, GLY389G, ILE253K, ILE286K, ILE387G, ILE388G, ILE411G, ILE412G, ILE416G, ILE423G, LEU318K, LEU319K, LEU325K, LEU381G, LEU414G, LEU425G, LEU426G, LYS278K, LYS282K, LYS323K, MET427G, PHE257K, PRO272K, PRO324K, PRO409G, SER250K, SER268K, SER276K, SER422G, TYR424G, VAL267K, VAL270K, VAL281K, VAL327K, VAL390G, VAL417G
• G-M: ALA110M, ALA406G, ALA407G, ALA410G, ALA58G, ARG112M, ARG45M, ASN113M, ASN44M, ASN46M, ASP52M, GLN57M, GLN59G, GLU32G, GLU35M, GLU62G, GLY117M, GLY63G, LYS116M, LYS408G, LYS89G, PHE34M, PHE61G, PRO409G, PRO60G, SER36M, THR43M, THR47M, THR51M, VAL109M, VAL31G
• H-I: ALA154H, ALA161I, ALA16H, ALA207I, ARG136I, ASP139I, ASP179I, GLY138I, GLY157I, GLY209H, GLY209I, GLY211H, GLY214I, ILE158I, LEU12H, LEU12I, LEU15H, LEU19H, PHE140I, PRO11H, PRO11I, PRO13I, PRO17H, PRO208I, SER14H, SER156H, SER160I, SER181H, SER212H, THR153H, THR155H, VAL137I, VAL213H, VAL213I
• H-J: ALA277H, ALA279H, ALA283H, ALA379J, ALA410J, ALA413J, ARG320H, ARG392J, ARG394J, ARG428J, ASN321H, ASN391J, ASP285H, ASP393J, GLN378J, GLN415J, GLU269H, GLU326H, GLU421J, GLY280H, GLY284H, GLY317H, GLY322H, GLY380J, GLY389J, ILE286H, ILE387J, ILE388J, ILE411J, ILE412J, ILE416J, ILE423J, LEU318H, LEU319H, LEU325H, LEU381J, LEU414J, LEU425J, LEU426J, LYS278H, LYS282H, LYS323H, MET427J, PHE266H, PRO324H, PRO409J, SER268H, SER276H, SER422J, TYR424J, VAL267H, VAL270H, VAL281H, VAL327H, VAL390J, VAL417J
• H-M: ALA251H, ALA256H, ARG68M, ASP252H, ASP48M, GLY49M, GLY67M, GLY71M, ILE253H, MET249H, PRO70M, SER250H, SER50M, THR69M
• J-K: ALA154J, ALA161K, ALA16J, ALA207K, ARG136K, ARG164K, ARG98J, ASN258K, ASN95J, ASP139K, ASP179K, ASP96J, GLN152J, GLN262K, GLY138K, GLY151J, GLY166K, GLY209J, GLY209K, GLY210J, GLY211J, GLY214K, GLY97J, ILE158K, ILE215K, LEU12J, LEU12K, LEU150J, LEU15J, LEU167K, LEU19J, PHE140K, PRO11J, PRO11K, PRO13J, PRO13K, PRO208K, SER14J, SER156J, SER160K, SER165K, SER181J, SER212J, THR153J, THR155J, VAL137K, VAL159K, VAL213J, VAL213K, VAL261K
• J-L: ALA154L, ALA161J, ALA16L, ALA207J, ARG136J, ASN183L, ASP139J, ASP179J, GLN262J, GLU20L, GLY138J, GLY157J, GLY209J, GLY209L, GLY210L, GLY211L, GLY214J, GLY97L, ILE158J, ILE215J, LEU12J, LEU12L, LEU15L, LEU19L, MET18L, PHE140J, PRO11J, PRO11L, PRO13J, PRO13L, PRO17L, PRO208J, SER14J, SER14L, SER156L, SER160J, SER181L, SER212L, THR153L, THR155L, THR178J, VAL137J, VAL213J, VAL213L
• J-M: ALA406J, ALA407J, ALA410J, ALA58J, ARG21M, ARG73M, ASN103M, ASN65M, ASN74M, ASN77M, ASP101M, GLN59J, GLY102M, GLY104M, GLY67M, GLY71M, LEU75M, LYS408J, LYS97M, PRO409J, PRO60J, SER100M, SER72M, THR34J, VAL99M
• K-L: ALA154K, ALA161L, ALA16K, ALA180K, ALA207L, ARG136L, ASN183K, ASP139L, ASP179L, GLY138L, GLY157K, GLY157L, GLY209K, GLY209L, GLY210K, GLY210L, GLY211K, GLY211L, GLY214K, GLY214L, ILE158L, ILE182K, ILE215L, LEU12K, LEU12L, LEU15K, PHE140L, PRO11K, PRO11L, PRO13L, PRO17K, PRO208K, PRO208L, SER14K, SER156K, SER160L, SER181K, SER212K, SER212L, THR153K, THR155K, THR178L, VAL137L, VAL159L, VAL213K, VAL213L