4A3E
rna polymerase ii initial transcribing complex with a 5nt dna-rna hybrid and soaked with ampcpp
Total interactions analyzed 105
Total true interactions 29
Strongest Interaction Chains C-L
Int. Res. 61
Norm. En. per Res. -4.883
Hub Node B(10)
Click on the Nodes or Edges in the network to see the details
Weak Strong
Width of edge <-> No. of inter. res.
All Interactions
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Chains Hydro. Bond Ener. (kJ/mol) Elec. Ener. (kJ/mol) VDW. Ener. (kJ/mol) Tot. Stab. Ener. (kJ/mol) #int. res. # Short cont. #Hydr. int. #VDW pairs #salt bridges #Pot. fav. elec. int #Pot. unfav. elec. int int. res.
A-B -585.085 -296.3181 -2827.23 -3708.633 764 150 60 109736 25 255 235
A-C -23.6078 8.8768 -80.4904 -95.2214 51 3 0 3302 0 14 19
A-D 0.0 0.0 -38.3327 -38.3327 37 1 2 1915 3 12 4
A-E -117.5775 -99.986 -613.548 -831.1114 195 27 14 23558 7 77 62
A-F -92.1502 -61.0887 -527.804 -681.0429 178 21 15 21267 5 60 55
A-G -22.8511 -64.5451 -147.312 -234.7082 64 7 5 5890 3 20 16
A-H -56.2417 -20.9122 -425.43 -502.5838 144 21 12 16880 3 38 32
A-I -105.6151 -22.8247 -473.384 -601.8238 141 24 9 17351 7 53 48
A-K -50.4172 -27.6577 -283.352 -361.4269 90 17 8 10401 2 22 19
B-C -104.2109 -103.2436 -523.431 -730.8855 167 27 6 17945 9 54 61
B-D -6.4011 -19.1679 -65.8668 -91.4358 40 3 1 2904 2 17 19
B-E 0.0 0.0 -8.5973 -8.5973 8 1 0 381 0 2 1
B-F 0.0 1.1065 -13.5478 -12.4413 22 0 0 525 0 5 6
B-G 0.0 -2.4239 -7.477 -9.9009 24 0 0 713 0 6 4
B-H 0.0 0.0 -0.2343 -0.2343 2 0 0 40 0 0 0
B-I -42.0243 -77.9865 -324.401 -444.4118 137 10 3 13461 5 47 49
B-J -34.566 -34.9105 -457.898 -527.3745 142 18 7 18911 7 34 36
B-K -2.8789 -32.8631 -90.0271 -125.7691 56 8 0 3466 4 16 19
B-L -62.8214 -117.1522 -284.851 -464.8246 112 10 8 11815 12 49 47
C-H 0.0 -2.484 -27.6908 -30.1748 21 0 1 1281 0 8 6
C-J -62.076 -44.0464 -256.217 -362.3394 108 19 10 12643 7 39 26
C-K -15.1069 -20.6283 -551.457 -587.1923 152 30 15 23508 8 46 45
C-L -66.4125 -65.2132 -166.238 -297.8637 61 10 8 5884 5 25 16
D-G -74.0867 -18.5373 -646.452 -739.0759 199 27 23 26213 13 54 48
E-F -7.9375 -22.4434 -34.2137 -64.5946 22 3 0 1398 0 5 5
F-G -2.7173 -9.7934 -122.913 -135.4237 53 4 1 4936 1 9 6
H-K 0.0 -7.6144 -39.7776 -47.392 28 3 0 1754 0 5 6
J-L 0.0 0.0 -8.7018 -8.7018 11 0 0 441 0 1 1
K-L 0.0 7.2825 -0.8199 6.4626 5 0 0 130 0 3 2