4A1D

t.thermophila 60s ribosomal subunit in complex with initiation factor 6. this file contains 26s rrna and proteins of molecule 4.

• Total interactions analyzed: 171
• Total true interactions: 12
• Strongest Interaction:
  • Chains: E-F
  • Int. Res.: 54
  • Norm. En. per Res.: -4.2664
• Hub Node: E(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	0.0	2.8745	-53.6376	-50.7631	25	10	2	2559	0	0	17
B-L	0.0	0.0	-3.6828	-3.6828	5	3	0	258	0	0	1
E-F	-25.159	-58.8153	-146.413	-230.3873	54	26	4	6053	4	20	18
E-H	-10.6438	-10.6446	-177.144	-198.4324	74	21	8	8704	1	9	17
E-O	-11.7535	-17.3674	-83.6853	-112.8062	36	13	3	3470	1	10	11
E-X	-4.2868	-12.3912	-12.4555	-29.1335	9	2	0	620	2	6	6
F-X	-49.8663	-15.0512	-241.17	-306.0875	104	38	12	11985	3	17	29
G-L	0.0	0.0	-38.6032	-38.6032	30	0	2	2029	0	5	8
G-N	-9.2918	-4.3481	-123.667	-137.3069	51	26	6	5175	0	7	10
H-X	-11.3147	8.0191	-30.4644	-33.76	18	3	0	1392	0	7	8
L-N	0.0	-26.4331	-157.858	-184.2911	57	14	11	7658	2	13	24
Q-U	-14.2898	1.1604	-104.4	-117.5294	64	24	1	6305	0	12	25

Interface residues

• A-B: ALA25A, ARG12B, ARG20A, ASN8B, CYS19A, CYS22A, GLN13A, GLY23A, HIS16A, ILE51B, LEU18A, LEU49B, LYS14A, LYS24A, LYS29A, LYS48B, LYS50B, MET9B, PHE13B, THR15A, THR17A, THR26A, THR6B, TYR27A, TYR52B
• B-L: ALA3B, ARG10L, ASN4B, GLY2B, LYS5B
• E-F: ALA101F, ALA175E, ARG100F, ARG108F, ARG110F, ARG185E, ARG62E, ASN102F, ASN172E, ASN181E, ASP105F, ASP107F, ASP184E, GLU168E, GLU188E, GLY104F, ILE52E, LEU103F, LEU114F, LEU170E, LEU174E, LEU180E, LEU51E, LEU96E, LYS101E, LYS115F, LYS117F, LYS171E, LYS177E, LYS190E, LYS97F, LYS99F, MET112F, MET189E, PHE106F, PHE109F, PHE169E, PHE178E, PHE191E, PRO186E, SER176E, SER97E, SER99E, THR100E, THR179E, THR98E, THR98F, TYR173E, VAL102E, VAL111F, VAL113F, VAL164E, VAL167E, VAL50E
• E-H: ALA10H, ALA113H, ALA49H, ALA55E, ALA93E, ARG112H, ARG13H, ARG185E, ARG42E, ARG55H, ARG59E, ARG62E, ARG76H, ASN111H, ASN181E, ASN182E, ASN183E, ASN41H, ASN43E, ASN43H, ASN91E, ASP184E, ASP44E, ASP47H, GLN40H, GLN92E, GLU188E, GLU46H, GLY56E, GLY60E, HIS187E, ILE45E, ILE52E, LEU108H, LEU14H, LEU180E, LEU39H, LEU41E, LEU51E, LEU53E, LEU54E, LEU96E, LYS177E, LYS17H, LYS38H, LYS40E, LYS54H, LYS61E, MET107H, MET189E, PHE178E, PHE191E, PHE50H, PHE58E, PRO110H, PRO11H, PRO186E, SER176E, SER97E, THR12H, THR179E, THR39E, THR44H, THR95E, TRP15H, TRP74H, TYR109H, TYR51H, TYR94E, VAL106H, VAL16H, VAL42H, VAL48H, VAL9H
• E-O: ALA107O, ALA21E, ALA91O, ARG116O, ARG34O, ARG95O, ASN113O, ASP22E, ASP23E, GLN105O, GLN88O, GLU24E, GLY102O, GLY86O, HIS115O, ILE15E, ILE94O, LEU108O, LEU111O, LYS101O, LYS104O, LYS109O, LYS110O, LYS14E, LYS17E, LYS20E, LYS92O, PHE106O, SER13E, SER16E, TRP18E, TYR19E, VAL112O, VAL12E, VAL87O, VAL90O
• E-X: ARG178X, ARG185E, GLU174X, GLU188E, HIS187E, LYS175X, LYS176X, THR179X, TYR177X
• F-X: ALA101F, ALA152X, ALA155X, ALA159X, ALA160X, ALA19F, ARG109X, ARG11F, ARG157X, ARG171X, ARG35F, ARG45F, ARG51F, ARG52F, ARG68F, ASN158X, ASN16F, ASN29F, ASN32F, ASN34F, ASN4F, ASN66F, ASN84X, ASP110X, ASP11X, ASP12X, ASP20F, ASP39F, GLN119X, GLN122X, GLN15X, GLN33F, GLN46F, GLN59F, GLN67F, GLN8F, GLU174X, GLU64F, GLY115X, GLY18F, GLY22F, HIS170X, HIS54F, ILE15F, ILE165X, ILE169X, ILE27F, ILE30F, ILE31F, ILE36F, ILE38F, ILE48F, ILE50F, LEU14X, LEU161X, LEU37F, LEU55F, LEU65F, LEU83X, LYS10X, LYS162X, LYS167X, LYS175X, LYS176X, LYS21F, LYS5F, LYS87X, LYS97F, MET156X, MET16X, PHE163X, PHE189X, PHE3F, PHE6F, PRO164X, PRO172X, PRO49F, PRO9X, SER112X, SER118X, SER173X, SER82X, THR13X, THR153X, THR168X, THR188X, THR69F, THR85X, TYR108X, TYR14F, TYR177X, TYR17F, VAL111X, VAL13F, VAL166X, VAL28F, VAL2F, VAL44F, VAL47F, VAL53F, VAL63F, VAL7F, VAL86X, VAL9F
• G-L: ALA94L, ARG35G, ARG52G, ARG88L, ARG90L, ARG93L, GLU55G, GLU57G, GLU99L, ILE31G, ILE56G, ILE91L, ILE92L, LEU62G, LEU96L, LYS28G, LYS53G, PHE95L, PRO49G, SER54G, SER89L, THR50G, THR85L, THR97L, TYR27G, TYR58G, TYR59G, VAL100L, VAL103L, VAL51G
• G-N: ALA2N, ALA33G, ALA39G, ALA60G, ALA63G, ARG35G, ARG52G, ARG84N, ARG9N, ASN36G, ASN76N, ASN78N, GLN64G, GLU30N, GLU55G, GLY37G, GLY39N, HIS40N, HIS79N, ILE12N, ILE31G, ILE34G, ILE56G, ILE65G, ILE80N, LEU14N, LEU5N, LEU62G, LEU77N, LYS28G, LYS32G, LYS3N, LYS40G, LYS6N, MET81N, PHE4N, PRO82N, SER54G, SER61G, SER66G, THR38G, THR83N, TYR27G, TYR58G, TYR59G, TYR85N, VAL10N, VAL11N, VAL41N, VAL51G, VAL75N
• H-X: ARG178X, ASN41H, ASN43H, ASN83H, ASN84H, ASP47H, GLU174X, GLU46H, GLY85H, LYS175X, LYS176X, LYS38H, LYS45H, THR179X, THR44H, TYR177X, VAL180X, VAL42H
• L-N: ALA19N, ALA94L, ARG143N, ARG17N, ARG76L, ARG84N, ARG88L, ARG90L, ARG93L, ARG9N, ASN78N, CYS86L, GLN15N, GLU98L, GLU99L, GLY16N, GLY20N, HIS134N, HIS79N, HIS84L, ILE102L, ILE12N, ILE80N, ILE91L, ILE92L, LEU13N, LEU142N, LEU14N, LEU77N, LEU82L, LEU96L, LYS106L, LYS141N, LYS21N, LYS22N, MET81N, PHE137N, PHE144N, PHE18N, PHE95L, PRO82N, SER133N, SER140N, SER75L, SER89L, THR83N, THR85L, THR97L, TYR78L, TYR85N, VAL100L, VAL103L, VAL10N, VAL11N, VAL74L, VAL77L, VAL87L
• Q-U: ALA2Q, ALA6Q, ALA80U, ARG102U, ARG182U, ARG194U, ARG57U, ARG98U, ARG99U, ASN101U, ASN10Q, ASN187U, ASN64U, ASP191U, ASP96U, CYS103U, GLN104U, GLN17Q, GLN183U, GLN188U, GLN23Q, GLN5Q, GLN61U, GLN76U, GLU105U, GLU108U, GLU184U, GLU19Q, GLU77U, GLY12Q, GLY8Q, HIS25Q, HIS97U, ILE14Q, ILE180U, ILE181U, ILE9Q, LEU107U, LEU18Q, LEU22Q, LEU75U, LYS100U, LYS11Q, LYS175U, LYS185U, LYS189U, LYS195U, LYS21Q, LYS24Q, LYS3Q, LYS65U, LYS79U, PHE13Q, PHE73U, SER106U, SER26Q, THR15Q, THR16Q, THR186U, THR74U, TRP190U, VAL177U, VAL28Q, VAL7Q