4A1B

t.thermophila 60s ribosomal subunit in complex with initiation factor 6. this file contains 26s rrna and proteins of molecule 3.

• Total interactions analyzed: 171
• Total true interactions: 13
• Strongest Interaction:
  • Chains: E-F
  • Int. Res.: 54
  • Norm. En. per Res.: -4.0205
• Hub Node: E(4)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-B	-7.3334	2.8618	-45.8959	-50.3675	25	13	2	2610	0	0	17
A-L	0.0	0.0	-0.0003	-0.0003	2	0	0	1	0	0	0
B-L	0.0	0.0	3.3596	3.3596	5	3	0	238	0	0	1
E-F	-24.3932	-64.5498	-128.166	-217.109	54	30	4	5975	4	20	18
E-H	-17.6412	-12.5295	-188.9	-219.0707	73	26	8	8844	1	10	17
E-O	-16.9426	-17.8636	-88.5078	-123.314	36	7	3	3502	1	10	11
E-X	-5.6307	-10.736	-13.9829	-30.3496	9	2	0	596	2	6	6
F-X	-48.6863	-14.3729	-239.035	-302.0941	106	35	12	12000	3	17	30
G-L	0.0	0.0	-36.8675	-36.8675	30	0	2	2025	0	5	8
G-N	-6.5527	-4.3508	-112.639	-123.5425	50	14	6	4681	0	7	11
H-X	-13.8343	8.1767	-36.437	-42.0945	18	1	0	1469	0	7	9
L-N	-8.195	-26.0715	-155.368	-189.6344	57	13	11	7558	2	13	23
Q-U	-17.4544	4.0713	-114.25	-127.6331	64	24	1	6619	0	12	25

Interface residues

• A-B: ALA25A, ARG12B, ARG20A, ASN8B, CYS19A, CYS22A, GLN13A, GLY23A, HIS16A, ILE51B, LEU18A, LEU49B, LYS14A, LYS24A, LYS29A, LYS48B, LYS50B, MET9B, PHE13B, THR15A, THR17A, THR26A, THR6B, TYR27A, TYR52B
• A-L: HIS12A, TYR13L
• B-L: ALA3B, ARG10L, ASN4B, GLY2B, LYS5B
• E-F: ALA101F, ALA175E, ARG100F, ARG108F, ARG110F, ARG185E, ARG62E, ASN102F, ASN172E, ASN181E, ASP105F, ASP107F, ASP184E, GLU168E, GLU188E, GLY104F, ILE52E, LEU103F, LEU114F, LEU170E, LEU174E, LEU180E, LEU51E, LEU96E, LYS101E, LYS115F, LYS117F, LYS171E, LYS177E, LYS190E, LYS97F, LYS99F, MET112F, MET189E, PHE106F, PHE109F, PHE169E, PHE178E, PHE191E, PRO186E, SER176E, SER97E, SER99E, THR100E, THR179E, THR98E, THR98F, TYR173E, VAL102E, VAL111F, VAL113F, VAL164E, VAL167E, VAL50E
• E-H: ALA10H, ALA113H, ALA49H, ALA55E, ALA93E, ARG112H, ARG13H, ARG185E, ARG42E, ARG55H, ARG59E, ARG62E, ARG76H, ASN111H, ASN181E, ASN182E, ASN183E, ASN41H, ASN43E, ASN43H, ASN91E, ASP184E, ASP44E, ASP47H, GLN40H, GLN92E, GLU188E, GLU46H, GLY56E, GLY60E, HIS187E, ILE45E, ILE52E, LEU108H, LEU14H, LEU180E, LEU39H, LEU41E, LEU51E, LEU53E, LEU54E, LEU96E, LYS177E, LYS17H, LYS38H, LYS40E, LYS54H, LYS61E, MET107H, MET189E, PHE178E, PHE191E, PHE50H, PHE58E, PRO110H, PRO11H, PRO186E, SER176E, SER97E, THR12H, THR179E, THR44H, THR95E, TRP15H, TRP74H, TYR109H, TYR51H, TYR94E, VAL106H, VAL16H, VAL42H, VAL48H, VAL9H
• E-O: ALA107O, ALA21E, ALA91O, ARG116O, ARG34O, ARG95O, ASN113O, ASP22E, ASP23E, GLN105O, GLN88O, GLU24E, GLY102O, GLY86O, HIS115O, ILE15E, ILE94O, LEU108O, LEU111O, LYS101O, LYS104O, LYS109O, LYS110O, LYS14E, LYS17E, LYS20E, LYS92O, PHE106O, SER13E, SER16E, TRP18E, TYR19E, VAL112O, VAL12E, VAL87O, VAL90O
• E-X: ARG178X, ARG185E, GLU174X, GLU188E, HIS187E, LYS175X, LYS176X, THR179X, TYR177X
• F-X: ALA101F, ALA152X, ALA155X, ALA159X, ALA160X, ALA19F, ARG109X, ARG11F, ARG157X, ARG171X, ARG35F, ARG45F, ARG51F, ARG52F, ARG68F, ASN158X, ASN16F, ASN29F, ASN32F, ASN34F, ASN4F, ASN66F, ASN84X, ASP110X, ASP11X, ASP12X, ASP20F, ASP39F, GLN119X, GLN122X, GLN15X, GLN33F, GLN46F, GLN59F, GLN67F, GLN8F, GLN94F, GLU174X, GLU64F, GLY115X, GLY18F, GLY22F, HIS170X, HIS54F, ILE15F, ILE165X, ILE169X, ILE27F, ILE30F, ILE31F, ILE36F, ILE38F, ILE48F, ILE50F, LEU14X, LEU161X, LEU37F, LEU55F, LEU65F, LEU83X, LYS10X, LYS162X, LYS167X, LYS175X, LYS176X, LYS21F, LYS5F, LYS87X, LYS97F, MET156X, MET16X, PHE163X, PHE189X, PHE3F, PHE6F, PRO164X, PRO172X, PRO49F, PRO9X, SER112X, SER118X, SER173X, SER82X, THR13X, THR153X, THR168X, THR188X, THR69F, THR85X, THR88X, TYR108X, TYR14F, TYR177X, TYR17F, VAL111X, VAL13F, VAL166X, VAL28F, VAL2F, VAL44F, VAL47F, VAL53F, VAL63F, VAL7F, VAL86X, VAL9F
• G-L: ALA94L, ARG35G, ARG52G, ARG88L, ARG90L, ARG93L, GLU55G, GLU57G, GLU99L, ILE31G, ILE56G, ILE91L, ILE92L, LEU62G, LEU96L, LYS28G, LYS53G, PHE95L, PRO49G, SER54G, SER89L, THR50G, THR85L, THR97L, TYR27G, TYR58G, TYR59G, VAL100L, VAL103L, VAL51G
• G-N: ALA2N, ALA33G, ALA39G, ALA60G, ALA63G, ARG35G, ARG52G, ARG84N, ARG9N, ASN36G, ASN76N, ASN78N, GLN64G, GLU30N, GLU55G, GLY37G, GLY39N, HIS40N, HIS79N, ILE31G, ILE34G, ILE56G, ILE65G, ILE80N, LEU14N, LEU5N, LEU62G, LEU77N, LYS28G, LYS32G, LYS3N, LYS40G, LYS6N, MET81N, PHE137N, PHE4N, PRO82N, SER54G, SER61G, THR38G, THR83N, TYR27G, TYR58G, TYR59G, TYR85N, VAL10N, VAL11N, VAL41N, VAL51G, VAL75N
• H-X: ARG178X, ASN41H, ASN43H, ASN83H, ASN84H, ASP47H, GLU174X, GLU46H, GLY85H, LYS175X, LYS176X, LYS38H, LYS45H, THR179X, THR44H, TYR177X, VAL180X, VAL42H
• L-N: ALA19N, ALA94L, ARG143N, ARG17N, ARG76L, ARG84N, ARG88L, ARG90L, ARG93L, ARG9N, ASN78N, CYS86L, GLN15N, GLU98L, GLU99L, GLY16N, GLY20N, HIS134N, HIS79N, HIS84L, ILE102L, ILE12N, ILE80N, ILE91L, ILE92L, LEU13N, LEU142N, LEU14N, LEU77N, LEU82L, LEU96L, LYS106L, LYS141N, LYS21N, LYS22N, MET81N, PHE137N, PHE144N, PHE18N, PHE95L, PRO82N, SER133N, SER140N, SER75L, SER89L, THR83N, THR85L, THR97L, TYR78L, TYR85N, VAL100L, VAL103L, VAL10N, VAL11N, VAL74L, VAL77L, VAL87L
• Q-U: ALA2Q, ALA6Q, ALA80U, ARG102U, ARG182U, ARG194U, ARG57U, ARG98U, ARG99U, ASN101U, ASN10Q, ASN187U, ASN64U, ASP191U, ASP96U, CYS103U, GLN104U, GLN17Q, GLN183U, GLN188U, GLN23Q, GLN5Q, GLN61U, GLN76U, GLU105U, GLU108U, GLU184U, GLU19Q, GLU77U, GLY12Q, GLY8Q, HIS25Q, HIS97U, ILE14Q, ILE180U, ILE181U, ILE9Q, LEU107U, LEU18Q, LEU22Q, LEU75U, LYS100U, LYS11Q, LYS175U, LYS185U, LYS189U, LYS195U, LYS21Q, LYS24Q, LYS3Q, LYS65U, LYS79U, PHE13Q, PHE73U, SER106U, SER26Q, THR15Q, THR16Q, THR186U, THR74U, TRP190U, VAL177U, VAL28Q, VAL7Q