3V4D

crystal structure of rutc protein a member of the yjgf family from e.coli

• Total interactions analyzed: 15
• Total true interactions: 8
• Strongest Interaction:
  • Chains: B-D
  • Int. Res.: 96
  • Norm. En. per Res.: -4.261
• Hub Node: A(3)

All Interactions

Chains	Hydro. Bond Ener. (kJ/mol)	Elec. Ener. (kJ/mol)	VDW. Ener. (kJ/mol)	Tot. Stab. Ener. (kJ/mol)	#int. res.	# Short cont.	#Hydr. int.	#VDW pairs	#salt bridges	#Pot. fav. elec. int	#Pot. unfav. elec. int
A-C	-66.3356	-20.0878	-302.788	-389.2115	97	10	9	11299	1	9	9
A-F	-49.3253	-19.6704	-268.081	-337.0767	90	8	8	10454	1	6	7
A-D	-13.2492	4.2753	-62.1962	-71.17	43	2	3	2378	0	11	10
C-F	-87.4004	-35.7754	-303.695	-426.8708	101	12	9	11622	3	11	10
C-D	0.0	0.0	-0.4053	-0.4053	7	0	0	83	0	4	3
B-D	-77.4257	-33.0163	-298.611	-409.053	96	13	9	11449	2	11	9
B-E	-44.4749	-19.6895	-282.631	-346.7954	97	9	9	11054	1	11	9
D-E	-70.9847	-19.7275	-297.292	-388.0042	93	12	9	11207	1	9	10

Interface residues

• A-C: ALA103A, ALA121C, ALA124A, ALA127A, ALA16C, ALA24C, ALA71A, ALA87A, ALA94A, ARG104A, ASN40C, ASN76A, ASN90A, ASP100A, ASP25A, ASP25C, ASP72A, CYS106A, CYS109A, CYS109C, GLN108A, GLN108C, GLU119C, GLU91A, GLU95A, GLY-1C, GLY110A, GLY110C, GLY21C, GLY26A, GLY26C, GLY32C, GLY68A, GLY99A, HIS0C, HIS125A, HIS125C, ILE107A, ILE107C, ILE120C, ILE123A, ILE123C, ILE126A, ILE6C, ILE78A, ILE78C, ILE7C, ILE80A, ILE80C, ILE89A, ILE92A, LEU111C, LEU23C, LEU34C, LYS101A, LYS113C, LYS3C, PHE105A, PHE105C, PHE18C, PHE36C, PHE75A, PHE75C, PHE79A, PHE79C, PHE96A, PHE97A, PRO102A, PRO114C, PRO17C, PRO20C, PRO2C, PRO98A, SER31C, SER4C, SER77A, SER77C, THR122C, THR22C, THR33C, THR69A, THR74A, TRP83A, TYR29A, TYR29C, TYR86A, TYR93A, VAL112C, VAL19C, VAL27A, VAL27C, VAL28A, VAL28C, VAL30C, VAL5C, VAL62C, VAL73A
• A-F: ALA103F, ALA121A, ALA124F, ALA127F, ALA24A, ALA71F, ALA87F, ALA94F, ARG104F, ASN40A, ASN76F, ASN90F, ASP100F, ASP25A, ASP25F, ASP72F, CYS106F, CYS109A, CYS109F, GLN108A, GLN108F, GLU119A, GLU91F, GLU95F, GLY110A, GLY110F, GLY21A, GLY26A, GLY26F, GLY32A, GLY99F, HIS125A, HIS125F, ILE107A, ILE107F, ILE120A, ILE123A, ILE123F, ILE126F, ILE6A, ILE78A, ILE78F, ILE7A, ILE80A, ILE80F, LEU111A, LEU23A, LEU34A, LYS101F, LYS113A, LYS3A, PHE105A, PHE105F, PHE18A, PHE36A, PHE75A, PHE75F, PHE79A, PHE79F, PHE97F, PRO102F, PRO114A, PRO17A, PRO20A, PRO2A, PRO98F, SER31A, SER4A, SER77A, SER77F, THR122A, THR22A, THR33A, THR69F, THR74F, TRP83F, TYR29A, TYR29F, TYR86F, TYR93F, VAL112A, VAL19A, VAL27A, VAL27F, VAL28A, VAL28F, VAL30A, VAL5A, VAL62A, VAL73F
• A-D: ALA127A, ALA127D, ALA66A, ALA66D, ALA71A, ALA9A, ALA9D, ARG60A, ARG60D, ASP72A, GLU57A, GLU64A, GLU64D, GLY10D, GLY26A, GLY67A, GLY67D, GLY68A, GLY68D, HIS125A, ILE126A, ILE126D, ILE63A, ILE63D, ILE6D, ILE7D, LEU23A, LEU23D, LYS128D, LYS61A, LYS61D, PRO2D, PRO8D, PRO98A, SER11D, SER4D, THR65A, THR65D, THR69A, THR69D, VAL28A, VAL5D, VAL62D
• C-F: ALA103C, ALA121F, ALA124C, ALA127C, ALA16F, ALA24F, ALA71C, ALA87C, ALA94C, ARG104C, ASN76C, ASN90C, ASP100C, ASP25C, ASP25F, ASP72C, CYS106C, CYS109C, CYS109F, GLN-2F, GLN108C, GLN108F, GLU119F, GLU91C, GLU95C, GLY-1F, GLY110C, GLY110F, GLY21F, GLY26C, GLY26F, GLY32F, GLY68C, GLY99C, HIS0F, HIS125C, HIS125F, ILE107C, ILE107F, ILE120F, ILE123C, ILE123F, ILE126C, ILE6F, ILE78C, ILE78F, ILE7F, ILE80C, ILE80F, ILE89C, ILE92C, LEU-5F, LEU111F, LEU15F, LEU23F, LEU34F, LYS101C, LYS113F, LYS128C, LYS3F, PHE105C, PHE105F, PHE18F, PHE36F, PHE75C, PHE75F, PHE79C, PHE79F, PHE97C, PRO102C, PRO114F, PRO14F, PRO17F, PRO20F, PRO2F, PRO98C, SER31F, SER4F, SER77C, SER77F, THR122F, THR22F, THR33F, THR69C, THR74C, THR81F, TRP83C, TYR29C, TYR29F, TYR86C, TYR93C, VAL112F, VAL19F, VAL27C, VAL27F, VAL28C, VAL28F, VAL30F, VAL5F, VAL62F, VAL73C
• C-D: ALA9D, ARG60D, GLY-1C, GLY10D, HIS0C, LYS61D, PRO2C
• B-D: ALA103B, ALA121D, ALA124B, ALA16D, ALA24D, ALA71B, ALA87B, ALA94B, ARG104B, ASN40D, ASN76B, ASN90B, ASP100B, ASP25B, ASP25D, ASP72B, CYS106B, CYS109B, CYS109D, GLN108B, GLN108D, GLU119D, GLU91B, GLU95B, GLY110B, GLY110D, GLY21D, GLY26B, GLY26D, GLY32D, GLY67B, GLY68B, GLY99B, HIS0D, HIS125B, HIS125D, ILE107B, ILE107D, ILE120D, ILE123B, ILE123D, ILE126B, ILE6D, ILE78B, ILE78D, ILE7D, ILE80B, ILE80D, ILE89B, ILE92B, LEU111D, LEU15D, LEU23D, LEU34D, LYS101B, LYS113D, LYS3D, PHE105B, PHE105D, PHE18D, PHE36D, PHE75B, PHE75D, PHE79B, PHE79D, PHE97B, PRO102B, PRO114D, PRO14D, PRO17D, PRO20D, PRO2D, PRO98B, SER31D, SER4D, SER77B, SER77D, THR122D, THR22D, THR33D, THR69B, THR74B, TRP83B, TYR29B, TYR29D, TYR86B, TYR93B, VAL112D, VAL19D, VAL27B, VAL27D, VAL28D, VAL30D, VAL5D, VAL62D, VAL73B
• B-E: ALA103E, ALA121B, ALA124E, ALA127E, ALA16B, ALA24B, ALA71E, ALA87E, ALA94E, ARG104E, ASN40B, ASN76E, ASN90E, ASP100E, ASP25B, ASP25E, ASP72E, CYS106E, CYS109B, CYS109E, GLN108B, GLN108E, GLU119B, GLU91E, GLU95E, GLY110B, GLY110E, GLY21B, GLY26B, GLY26E, GLY32B, GLY68E, GLY99E, HIS0B, HIS125B, HIS125E, ILE107B, ILE107E, ILE120B, ILE123B, ILE123E, ILE126E, ILE6B, ILE78B, ILE78E, ILE7B, ILE80B, ILE80E, ILE89E, ILE92E, LEU111B, LEU23B, LEU34B, LYS101E, LYS113B, LYS128E, LYS3B, PHE105B, PHE105E, PHE18B, PHE36B, PHE75B, PHE75E, PHE79B, PHE79E, PHE96E, PHE97E, PRO102E, PRO114B, PRO17B, PRO20B, PRO2B, PRO98E, SER31B, SER4B, SER77B, SER77E, THR122B, THR22B, THR33B, THR69E, THR74E, THR81B, TRP83E, TYR29B, TYR29E, TYR86E, TYR93E, VAL112B, VAL19B, VAL27B, VAL27E, VAL28B, VAL30B, VAL5B, VAL62B, VAL73E
• D-E: ALA103D, ALA121E, ALA124D, ALA127D, ALA24E, ALA71D, ALA87D, ALA94D, ARG104D, ASN40E, ASN76D, ASN90D, ASP100D, ASP25D, ASP25E, ASP72D, CYS106D, CYS109D, CYS109E, GLN108D, GLN108E, GLU119E, GLU91D, GLU95D, GLY-1E, GLY110D, GLY110E, GLY21E, GLY26D, GLY26E, GLY32E, GLY68D, GLY99D, HIS0E, HIS125D, HIS125E, ILE107D, ILE107E, ILE120E, ILE123D, ILE123E, ILE126D, ILE6E, ILE78D, ILE78E, ILE7E, ILE80D, ILE80E, LEU111E, LEU23E, LEU34E, LYS101D, LYS113E, LYS128D, LYS3E, PHE105D, PHE105E, PHE18E, PHE36E, PHE75D, PHE75E, PHE79D, PHE79E, PHE97D, PRO102D, PRO114E, PRO17E, PRO20E, PRO2E, PRO98D, SER31E, SER4E, SER77D, SER77E, THR122E, THR22E, THR33E, THR69D, THR74D, TRP83D, TYR29D, TYR29E, TYR86D, TYR93D, VAL112E, VAL19E, VAL27D, VAL27E, VAL28E, VAL30E, VAL5E, VAL62E, VAL73D